Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47131 * 2 1 4 4 C 1.46897 * 111.00394 * 76.01973 * 3 2 1 5 5 C 1.52996 * 109.47248 * 199.54828 * 4 3 2 6 6 N 1.46502 * 109.47272 * 174.88768 * 5 4 3 7 7 C 1.34770 * 120.00021 * 179.97438 * 6 5 4 8 8 O 1.21705 * 120.00430 * 0.02562 * 7 6 5 9 9 C 1.46582 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.36651 * 125.46285 * 179.97438 * 9 7 6 11 11 C 1.37466 * 113.30186 * 179.97438 * 10 9 7 12 12 C 1.50697 * 122.45015 * 179.97438 * 11 10 9 13 13 C 1.33821 * 115.10079 * 359.97438 * 11 10 9 14 14 S 1.70622 * 110.95480 * 359.76624 * 13 11 10 15 15 C 1.46899 * 110.99639 * 199.97837 * 3 2 1 16 16 C 1.50697 * 109.47488 * 66.04437 * 15 3 2 17 17 O 1.21298 * 119.99912 * 359.97438 * 16 15 3 18 18 N 1.34781 * 120.00169 * 179.97438 * 16 15 3 19 19 C 1.37093 * 119.99962 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00049 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00081 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99567 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00300 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46992 * 89.99522 * 23 21 19 25 25 H 1.48495 * 109.47476 * 209.99842 * 23 21 19 26 26 H 1.48508 * 109.47120 * 329.99997 * 23 21 19 27 27 H 1.08999 * 109.46883 * 54.87871 * 1 2 3 28 28 H 1.09004 * 109.46892 * 174.87364 * 1 2 3 29 29 H 1.08995 * 109.47880 * 294.87589 * 1 2 3 30 30 H 1.08992 * 109.47869 * 239.99021 * 2 1 3 31 31 H 1.09002 * 109.47092 * 119.99269 * 2 1 3 32 32 H 1.09002 * 109.46833 * 79.54684 * 4 3 2 33 33 H 1.08997 * 109.47212 * 319.55049 * 4 3 2 34 34 H 1.08999 * 109.47319 * 54.88527 * 5 4 3 35 35 H 1.09004 * 109.47137 * 294.88970 * 5 4 3 36 36 H 0.97005 * 119.99787 * 0.02562 * 6 5 4 37 37 H 1.07998 * 123.34615 * 359.97438 * 10 9 7 38 38 H 1.09002 * 109.46957 * 90.00146 * 12 11 10 39 39 H 1.09001 * 109.46897 * 209.99555 * 12 11 10 40 40 H 1.08996 * 109.47570 * 329.99635 * 12 11 10 41 41 H 1.08001 * 124.52333 * 179.97438 * 13 11 10 42 42 H 1.09013 * 109.46796 * 186.04265 * 15 3 2 43 43 H 1.09000 * 109.47516 * 306.03823 * 15 3 2 44 44 H 0.96994 * 119.99784 * 359.97438 * 18 16 15 45 45 H 0.97005 * 119.99525 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8828 1.9919 1.3307 5 6 1.9277 3.5159 1.2034 6 7 1.6695 4.1231 2.5114 7 6 1.6603 5.4644 2.6416 8 8 1.8660 6.1714 1.6726 9 6 1.4014 6.0720 3.9503 10 6 1.3666 7.4134 4.2087 11 6 1.1014 7.7069 5.5252 12 6 1.0164 9.1217 6.0370 13 6 0.9242 6.6443 6.3191 14 16 1.0777 5.1915 5.4376 15 6 3.4103 1.4516 -0.4686 16 6 3.4713 1.0498 -1.9197 17 8 2.4561 0.7380 -2.5059 18 7 4.6538 1.0367 -2.5662 19 6 4.7092 0.6717 -3.8865 20 1 3.8053 0.3941 -4.4084 21 6 5.9284 0.6577 -4.5529 22 7 7.0282 0.9950 -3.9177 23 14 6.0040 0.1596 -6.3517 24 1 5.8328 1.3622 -7.2060 25 1 7.3197 -0.4670 -6.6370 26 1 4.9194 -0.8124 -6.6422 27 1 -0.3633 0.5912 -0.8406 28 1 -0.3633 -1.0236 -0.0918 29 1 -0.3635 0.4323 0.9322 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 2.7003 1.6563 1.9689 33 1 0.9318 1.6919 1.7708 34 1 1.1676 3.8438 0.4942 35 1 2.9118 3.8220 0.8485 36 1 1.5059 3.5596 3.2839 37 1 1.5312 8.1679 3.4536 38 1 -0.0109 9.4768 5.9544 39 1 1.3276 9.1497 7.0812 40 1 1.6708 9.7620 5.4456 41 1 0.7092 6.6990 7.3761 42 1 3.7826 2.4702 -0.3577 43 1 4.0258 0.7734 0.1225 44 1 5.4655 1.2864 -2.0976 45 1 7.8793 0.9856 -4.3831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714586047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = -62.093492 kcal Electronic energy + Delta-G solvation = -26022.858777 eV Core-core repulsion = 22166.009287 eV Total energy + Delta-G solvation = -3856.849490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98668 -40.41293 -39.06032 -38.30552 -36.07623 -35.67933 -33.30361 -32.47208 -31.84676 -30.42551 -28.71867 -27.85600 -26.20266 -25.27456 -23.48343 -22.35384 -21.68107 -20.90933 -19.96884 -19.86923 -19.40615 -17.92405 -17.41029 -17.00387 -16.94177 -16.50815 -16.27392 -16.23118 -15.69265 -15.47869 -15.39287 -15.05021 -14.75641 -14.56310 -14.38543 -14.06410 -14.02616 -13.67838 -13.43632 -13.15551 -13.02758 -12.91987 -12.85381 -12.78844 -12.67307 -12.57136 -12.41323 -12.14191 -12.03285 -11.90055 -11.76577 -11.41442 -11.31064 -10.34563 -10.25206 -9.98751 -9.83212 -9.33463 -9.24056 -8.45906 -5.94216 -0.53105 0.47201 0.90754 1.32624 1.37659 1.40929 1.53673 1.87491 2.06601 2.09079 2.29323 2.84823 3.21073 3.37330 3.69776 3.85964 4.01536 4.07080 4.16397 4.18910 4.27829 4.38002 4.39297 4.46064 4.56373 4.59547 4.69416 4.72870 4.76064 4.85122 4.87420 4.91893 5.02939 5.05507 5.19547 5.25834 5.39392 5.41456 5.43164 5.47097 5.89558 6.08847 6.19347 6.34917 6.61445 7.02606 7.13937 7.57678 8.13487 8.71640 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.001985 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.351936 B =14099.360400 C =15197.088937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.533 5.533 4 C 0.053 3.947 5 C 0.128 3.872 6 N -0.709 5.709 7 C 0.585 3.415 8 O -0.577 6.577 9 C -0.299 4.299 10 C -0.060 4.060 11 C -0.132 4.132 12 C -0.094 4.094 13 C -0.225 4.225 14 S 0.252 5.748 15 C 0.055 3.945 16 C 0.441 3.559 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.016 4.016 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.412 0.588 37 H 0.141 0.859 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.199 0.801 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.395 0.605 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 8.277 28.133 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.259 5.259 4 C -0.075 4.075 5 C 0.004 3.996 6 N -0.361 5.361 7 C 0.373 3.627 8 O -0.459 6.459 9 C -0.419 4.419 10 C -0.095 4.095 11 C -0.144 4.144 12 C -0.153 4.153 13 C -0.362 4.362 14 S 0.521 5.479 15 C -0.076 4.076 16 C 0.229 3.771 17 O -0.496 6.496 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.249 0.751 37 H 0.158 0.842 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.216 0.784 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.228 0.772 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.818 7.213 27.051 30.388 hybrid contribution 1.292 0.934 -0.706 1.743 sum -10.527 8.147 26.346 29.517 Atomic orbital electron populations 1.21641 0.93787 1.01713 1.01840 1.22102 0.97220 0.87431 1.00585 1.61347 1.18840 1.20335 1.25362 1.22257 1.03882 0.91959 0.89435 1.21202 1.01223 0.93282 0.83893 1.45575 1.72373 1.05730 1.12398 1.17333 0.76081 0.82248 0.87042 1.90841 1.51462 1.62717 1.40845 1.24488 1.19967 0.99058 0.98417 1.20843 0.96789 0.94531 0.97337 1.18961 1.04714 0.98775 0.91977 1.20572 1.03060 0.89602 1.02019 1.25597 1.07768 0.96421 1.06461 1.82667 1.63518 1.06853 0.94872 1.21793 0.90852 1.02899 0.92077 1.20751 0.83330 0.82948 0.90112 1.90485 1.35154 1.54175 1.69814 1.41949 1.08295 1.60248 1.10914 1.19646 0.94867 1.43882 0.87564 0.90290 1.26045 0.94133 0.97017 1.04313 1.69679 0.99090 1.48552 1.38961 0.84930 0.77846 0.78487 0.77077 1.19880 1.19488 1.19671 0.94241 0.91514 0.91036 0.92763 0.93028 0.91667 0.87652 0.92284 0.92575 0.75084 0.84164 0.90411 0.89781 0.91406 0.78355 0.88106 0.90934 0.77157 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.96 71.98 0.72 -2.68 16 2 C 0.05 1.62 5.18 86.30 0.45 2.06 16 3 N -0.53 -16.59 4.10 -900.81 -3.70 -20.29 16 4 C 0.05 1.12 4.92 86.30 0.42 1.55 16 5 C 0.13 3.24 5.70 86.38 0.49 3.74 16 6 N -0.71 -14.76 5.55 -467.18 -2.59 -17.35 16 7 C 0.59 15.48 7.78 86.42 0.67 16.15 16 8 O -0.58 -20.92 16.84 -4.37 -0.07 -20.99 16 9 C -0.30 -6.03 6.45 24.08 0.16 -5.87 16 10 C -0.06 -1.17 9.80 21.72 0.21 -0.96 16 11 C -0.13 -1.77 5.78 -21.05 -0.12 -1.90 16 12 C -0.09 -0.81 10.13 71.24 0.72 -0.09 16 13 C -0.22 -2.22 10.67 66.82 0.71 -1.51 16 14 S 0.25 2.78 22.16 -56.49 -1.25 1.53 16 15 C 0.05 1.92 5.27 85.56 0.45 2.37 16 16 C 0.44 21.33 7.29 87.66 0.64 21.97 16 17 O -0.61 -33.88 14.12 -3.08 -0.04 -33.93 16 18 N -0.58 -30.24 5.29 -306.98 -1.62 -31.87 16 19 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 22 N -0.92 -50.82 13.05 21.66 0.28 -50.54 16 23 Si 0.99 43.94 29.55 68.60 2.03 45.96 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.41 6.91 -2.39 -0.02 1.39 16 30 H 0.05 2.12 5.85 -2.39 -0.01 2.11 16 31 H 0.05 1.24 8.00 -2.39 -0.02 1.23 16 32 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16 33 H 0.11 1.77 6.58 -2.39 -0.02 1.75 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.62 6.95 -2.38 -0.02 1.60 16 36 H 0.41 5.58 7.59 -92.70 -0.70 4.88 16 37 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.44 8.12 -2.39 -0.02 0.42 16 40 H 0.07 0.61 8.13 -2.39 -0.02 0.59 16 41 H 0.20 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.10 3.31 6.71 -2.38 -0.02 3.29 16 43 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 44 H 0.39 19.78 7.90 -92.71 -0.73 19.05 16 45 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -77.11 389.11 -0.57 -77.68 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.41 Total: 33.60 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 6.81 Total: 16.18 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -7.63 Total: -120.04 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -0.12 Total: -54.92 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.25 Total: 1.53 kcal Total: -77.11 -0.57 -77.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714586047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.590 kcal (2) G-P(sol) polarization free energy of solvation -77.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds