Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46765 * 124.34813 * 2 1 4 4 C 1.54487 * 105.47424 * 197.03891 * 3 2 1 5 5 C 1.54634 * 101.76213 * 334.58304 * 4 3 2 6 6 H 1.08998 * 110.60008 * 143.53074 * 5 4 3 7 7 N 1.46899 * 110.48741 * 266.12028 * 5 4 3 8 8 C 1.49483 * 110.47436 * 188.46765 * 7 5 4 9 9 C 1.56011 * 105.17536 * 122.90878 * 8 7 5 10 10 H 1.08994 * 116.85926 * 158.59526 * 9 8 7 11 11 C 1.57074 * 99.67547 * 32.20195 * 9 8 7 12 12 C 1.49709 * 110.99701 * 304.98539 * 7 5 4 13 13 H 1.08998 * 116.16967 * 76.14524 * 12 7 5 14 14 C 1.56001 * 105.06792 * 306.25049 * 12 7 5 15 15 N 1.47864 * 105.12229 * 288.93185 * 14 12 7 16 16 C 1.34779 * 126.93174 * 181.83933 * 15 14 12 17 17 O 1.21275 * 120.00657 * 179.69073 * 16 15 14 18 18 C 1.50698 * 119.99493 * 359.68955 * 16 15 14 19 19 S 1.80997 * 109.47273 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00484 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99792 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00060 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99546 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47298 * 269.99503 * 24 22 20 26 26 H 1.48493 * 109.47760 * 30.00167 * 24 22 20 27 27 H 1.48506 * 109.46909 * 150.00088 * 24 22 20 28 28 C 1.34419 * 124.35070 * 180.02562 * 2 1 3 29 29 O 1.21280 * 124.94287 * 359.53833 * 28 2 1 30 30 H 1.08995 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47154 * 299.99819 * 1 2 3 32 32 H 1.09003 * 109.47241 * 59.99927 * 1 2 3 33 33 H 1.08997 * 110.24737 * 316.03659 * 3 2 1 34 34 H 1.08998 * 110.24775 * 78.03783 * 3 2 1 35 35 H 1.08992 * 110.96734 * 216.46713 * 4 3 2 36 36 H 1.08999 * 110.96834 * 92.69733 * 4 3 2 37 37 H 1.09004 * 110.83791 * 3.68175 * 8 7 5 38 38 H 1.09003 * 109.70418 * 241.55237 * 8 7 5 39 39 H 1.09006 * 112.35659 * 64.14307 * 11 9 8 40 40 H 1.09000 * 112.36078 * 191.46584 * 11 9 8 41 41 H 1.09004 * 110.40745 * 169.97487 * 14 12 7 42 42 H 1.08990 * 110.21517 * 47.79421 * 14 12 7 43 43 H 1.09007 * 109.47342 * 59.99802 * 18 16 15 44 44 H 1.09002 * 109.47645 * 299.99960 * 18 16 15 45 45 H 0.97002 * 120.00351 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7489 -0.4363 5 6 3.6898 -0.7378 -0.0110 6 1 4.2328 -1.3474 -0.7332 7 7 4.2693 -0.8933 1.3300 8 6 4.4476 -2.3408 1.6579 9 6 5.9656 -2.5027 1.9792 10 1 6.2527 -3.3672 2.5777 11 6 6.2553 -1.0910 2.6039 12 6 5.6423 -0.2999 1.3931 13 1 5.6940 0.7876 1.4460 14 6 6.4280 -0.9703 0.2240 15 7 6.6352 -2.3706 0.6515 16 6 7.2996 -3.3323 -0.0195 17 8 7.3983 -4.4444 0.4540 18 6 7.9198 -3.0256 -1.3583 19 16 8.7346 -4.5090 -1.9998 20 6 9.3543 -3.8822 -3.5255 21 1 9.1743 -2.8532 -3.7995 22 6 10.0728 -4.7113 -4.3757 23 7 10.2918 -5.9656 -4.0420 24 14 10.7291 -4.0469 -5.9935 25 1 9.7146 -4.2479 -7.0592 26 1 11.0184 -2.5973 -5.8525 27 1 11.9761 -4.7677 -6.3552 28 6 2.2235 -1.1098 -0.0005 29 8 1.7947 -2.2442 0.0070 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8982 1.9385 -0.7099 34 1 2.3309 1.6428 1.0004 35 1 4.4754 1.3011 0.0959 36 1 3.8264 0.8451 -1.5147 37 1 4.1711 -2.9674 0.8099 38 1 3.8465 -2.5966 2.5305 39 1 5.7033 -0.9259 3.5292 40 1 7.3219 -0.9028 2.7266 41 1 7.3872 -0.4738 0.0767 42 1 5.8395 -0.9378 -0.6927 43 1 8.6544 -2.2284 -1.2444 44 1 7.1434 -2.7074 -2.0541 45 1 9.9507 -6.3107 -3.2021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714983165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -14.403161 kcal Electronic energy + Delta-G solvation = -28001.542311 eV Core-core repulsion = 24146.760829 eV Total energy + Delta-G solvation = -3854.781483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.79858 -40.17754 -38.23158 -36.68108 -34.43731 -32.58258 -32.54329 -30.38674 -30.11689 -28.75757 -27.33003 -26.26143 -25.16864 -24.78515 -22.57417 -21.70884 -20.38485 -19.93978 -18.85353 -18.28735 -17.47518 -17.06664 -16.88026 -16.36190 -15.97730 -15.33591 -15.12578 -14.76046 -14.29625 -14.09242 -13.88042 -13.73489 -13.68687 -13.60052 -13.18490 -12.98566 -12.88109 -12.60435 -12.54186 -12.41261 -12.25127 -12.23001 -12.01632 -11.78988 -11.67455 -11.52027 -11.38385 -11.22638 -10.92554 -10.20750 -10.03322 -9.62519 -9.58324 -9.09565 -9.03012 -8.93291 -8.50257 -8.24184 -6.69395 -6.63860 -4.02018 2.20655 2.66012 2.67603 2.90797 3.28901 3.37121 3.39702 3.50864 3.54438 3.81835 3.93799 4.04093 4.21371 4.25361 4.40995 4.45655 4.66322 4.74506 4.81245 4.91040 4.93776 5.03714 5.07723 5.11357 5.15529 5.21012 5.30353 5.34818 5.37396 5.40238 5.46946 5.48532 5.53145 5.58305 5.68158 5.72630 5.77747 5.96143 6.08200 6.16847 6.27533 6.47183 6.76021 7.53908 7.89850 7.89962 8.40599 8.48388 9.25456 10.80145 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.002917 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.704147 B = 9596.192237 C =10422.640008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.620 5.620 3 C 0.111 3.889 4 C -0.133 4.133 5 C 0.032 3.968 6 H 0.087 0.913 7 N -0.488 5.488 8 C 0.023 3.977 9 C 0.115 3.885 10 H 0.129 0.871 11 C -0.132 4.132 12 C 0.050 3.950 13 H 0.138 0.862 14 C 0.066 3.934 15 N -0.628 5.628 16 C 0.550 3.450 17 O -0.513 6.513 18 C -0.123 4.123 19 S -0.115 6.115 20 C -0.607 4.607 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.884 5.884 24 Si 1.087 2.913 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.279 1.279 28 C 0.533 3.467 29 O -0.524 6.524 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 21.570 12.214 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.355 5.355 3 C -0.012 4.012 4 C -0.171 4.171 5 C -0.080 4.080 6 H 0.105 0.895 7 N -0.214 5.214 8 C -0.105 4.105 9 C 0.011 3.989 10 H 0.147 0.853 11 C -0.171 4.171 12 C -0.058 4.058 13 H 0.155 0.845 14 C -0.058 4.058 15 N -0.367 5.367 16 C 0.339 3.661 17 O -0.387 6.387 18 C -0.274 4.274 19 S 0.111 5.889 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.913 3.087 25 H -0.210 1.210 26 H -0.213 1.213 27 H -0.205 1.205 28 C 0.319 3.681 29 O -0.398 6.398 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.941 19.042 11.857 27.519 hybrid contribution -0.554 1.637 -0.062 1.730 sum -16.494 20.679 11.795 28.962 Atomic orbital electron populations 1.21553 0.77998 1.03815 1.01403 1.48060 1.06455 1.07359 1.73664 1.22000 0.90015 0.87106 1.02029 1.22815 0.97550 0.94169 1.02560 1.22654 0.94058 0.98141 0.93153 0.89500 1.65700 1.19773 1.13083 1.22864 1.24004 0.95644 0.88017 1.02861 1.23976 0.91233 0.98994 0.84676 0.85284 1.23956 1.01616 0.93931 0.97556 1.24713 0.86770 0.99568 0.94701 0.84497 1.23168 1.01199 0.82970 0.98509 1.49290 1.55912 1.10696 1.20789 1.19999 0.76857 0.83430 0.85839 1.90714 1.58156 1.21208 1.68575 1.23281 1.02837 1.05840 0.95486 1.84849 1.68338 1.11925 1.23777 1.23709 1.44333 1.01754 1.05722 0.91641 1.26063 0.94078 0.94095 1.03304 1.70763 1.41921 1.14211 1.24895 0.83285 0.76852 0.74858 0.73662 1.21041 1.21303 1.20468 1.20551 0.88451 0.84338 0.74774 1.90742 1.78331 1.21139 1.49610 0.89959 0.92013 0.92097 0.90471 0.90620 0.88261 0.89308 0.90619 0.89099 0.88618 0.89366 0.90447 0.90713 0.89120 0.89351 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.14 59.85 0.67 1.32 16 2 N -0.62 -5.46 3.33 -180.28 -0.60 -6.07 16 3 C 0.11 0.61 7.35 -3.12 -0.02 0.58 16 4 C -0.13 -0.76 6.43 -25.09 -0.16 -0.92 16 5 C 0.03 0.31 1.57 -67.72 -0.11 0.20 16 6 H 0.09 1.02 6.03 -51.93 -0.31 0.71 16 7 N -0.49 -4.54 5.21 -207.87 -1.08 -5.62 16 8 C 0.02 0.27 5.78 -0.77 0.00 0.27 16 9 C 0.11 1.35 5.23 -62.56 -0.33 1.03 16 10 H 0.13 1.62 8.06 -51.93 -0.42 1.20 16 11 C -0.13 -1.06 6.79 -22.30 -0.15 -1.21 16 12 C 0.05 0.37 4.17 -62.32 -0.26 0.11 16 13 H 0.14 0.60 7.00 -51.93 -0.36 0.23 16 14 C 0.07 0.67 5.61 -1.69 -0.01 0.66 16 15 N -0.63 -8.93 2.95 -156.82 -0.46 -9.39 16 16 C 0.55 10.73 7.91 -10.99 -0.09 10.64 16 17 O -0.51 -12.01 16.21 5.56 0.09 -11.92 16 18 C -0.12 -2.58 5.44 36.00 0.20 -2.38 16 19 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 20 C -0.61 -17.65 9.50 30.94 0.29 -17.35 16 21 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 22 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 23 N -0.88 -27.76 13.67 55.49 0.76 -27.01 16 24 Si 1.09 25.09 29.92 -169.99 -5.09 20.01 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.53 6.50 7.30 -10.86 -0.08 6.42 16 29 O -0.52 -8.65 16.80 5.56 0.09 -8.56 16 30 H 0.08 0.71 7.53 -51.93 -0.39 0.32 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.38 5.97 -51.93 -0.31 0.07 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.14 7.16 -51.93 -0.37 0.77 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.77 5.37 -51.93 -0.28 0.49 16 43 H 0.09 1.76 8.14 -51.91 -0.42 1.33 16 44 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.28 8.95 7.13 -40.82 -0.29 8.65 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -38.51 370.33 -9.56 -48.07 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.59 Total: -0.11 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.15 Total: 0.29 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.39 Total: -48.08 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.18 Total: -20.48 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.01 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.51 -9.56 -48.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714983165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.664 kcal (2) G-P(sol) polarization free energy of solvation -38.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds