Wall clock time and date at job start Sat Apr 11 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46765 * 124.34813 * 2 1 4 4 C 1.54487 * 105.47424 * 197.03891 * 3 2 1 5 5 C 1.54634 * 101.76213 * 334.58304 * 4 3 2 6 6 H 1.08998 * 110.60008 * 143.53074 * 5 4 3 7 7 N 1.46899 * 110.48741 * 266.12028 * 5 4 3 8 8 C 1.49483 * 110.47436 * 188.46765 * 7 5 4 9 9 C 1.56011 * 105.17536 * 122.90878 * 8 7 5 10 10 H 1.08994 * 116.85926 * 158.59526 * 9 8 7 11 11 C 1.57074 * 99.67547 * 32.20195 * 9 8 7 12 12 C 1.49709 * 110.99701 * 304.98539 * 7 5 4 13 13 H 1.08998 * 116.16967 * 76.14524 * 12 7 5 14 14 C 1.56001 * 105.06792 * 306.25049 * 12 7 5 15 15 N 1.47864 * 105.12229 * 288.93185 * 14 12 7 16 16 C 1.34779 * 126.93174 * 181.83933 * 15 14 12 17 17 O 1.21275 * 120.00657 * 179.69073 * 16 15 14 18 18 C 1.50698 * 119.99493 * 359.68955 * 16 15 14 19 19 S 1.80997 * 109.47273 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00484 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99792 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00060 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99546 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47298 * 269.99503 * 24 22 20 26 26 H 1.48493 * 109.47760 * 30.00167 * 24 22 20 27 27 H 1.48506 * 109.46909 * 150.00088 * 24 22 20 28 28 C 1.34419 * 124.35070 * 180.02562 * 2 1 3 29 29 O 1.21280 * 124.94287 * 359.53833 * 28 2 1 30 30 H 1.08995 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47154 * 299.99819 * 1 2 3 32 32 H 1.09003 * 109.47241 * 59.99927 * 1 2 3 33 33 H 1.08997 * 110.24737 * 316.03659 * 3 2 1 34 34 H 1.08998 * 110.24775 * 78.03783 * 3 2 1 35 35 H 1.08992 * 110.96734 * 216.46713 * 4 3 2 36 36 H 1.08999 * 110.96834 * 92.69733 * 4 3 2 37 37 H 1.09004 * 110.83791 * 3.68175 * 8 7 5 38 38 H 1.09003 * 109.70418 * 241.55237 * 8 7 5 39 39 H 1.09006 * 112.35659 * 64.14307 * 11 9 8 40 40 H 1.09000 * 112.36078 * 191.46584 * 11 9 8 41 41 H 1.09004 * 110.40745 * 169.97487 * 14 12 7 42 42 H 1.08990 * 110.21517 * 47.79421 * 14 12 7 43 43 H 1.09007 * 109.47342 * 59.99802 * 18 16 15 44 44 H 1.09002 * 109.47645 * 299.99960 * 18 16 15 45 45 H 0.97002 * 120.00351 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7489 -0.4363 5 6 3.6898 -0.7378 -0.0110 6 1 4.2328 -1.3474 -0.7332 7 7 4.2693 -0.8933 1.3300 8 6 4.4476 -2.3408 1.6579 9 6 5.9656 -2.5027 1.9792 10 1 6.2527 -3.3672 2.5777 11 6 6.2553 -1.0910 2.6039 12 6 5.6423 -0.2999 1.3931 13 1 5.6940 0.7876 1.4460 14 6 6.4280 -0.9703 0.2240 15 7 6.6352 -2.3706 0.6515 16 6 7.2996 -3.3323 -0.0195 17 8 7.3983 -4.4444 0.4540 18 6 7.9198 -3.0256 -1.3583 19 16 8.7346 -4.5090 -1.9998 20 6 9.3543 -3.8822 -3.5255 21 1 9.1743 -2.8532 -3.7995 22 6 10.0728 -4.7113 -4.3757 23 7 10.2918 -5.9656 -4.0420 24 14 10.7291 -4.0469 -5.9935 25 1 9.7146 -4.2479 -7.0592 26 1 11.0184 -2.5973 -5.8525 27 1 11.9761 -4.7677 -6.3552 28 6 2.2235 -1.1098 -0.0005 29 8 1.7947 -2.2442 0.0070 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8982 1.9385 -0.7099 34 1 2.3309 1.6428 1.0004 35 1 4.4754 1.3011 0.0959 36 1 3.8264 0.8451 -1.5147 37 1 4.1711 -2.9674 0.8099 38 1 3.8465 -2.5966 2.5305 39 1 5.7033 -0.9259 3.5292 40 1 7.3219 -0.9028 2.7266 41 1 7.3872 -0.4738 0.0767 42 1 5.8395 -0.9378 -0.6927 43 1 8.6544 -2.2284 -1.2444 44 1 7.1434 -2.7074 -2.0541 45 1 9.9507 -6.3107 -3.2021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714983165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:06 Heat of formation + Delta-G solvation = -44.450382 kcal Electronic energy + Delta-G solvation = -28002.845257 eV Core-core repulsion = 24146.760829 eV Total energy + Delta-G solvation = -3856.084428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.66690 -41.09526 -39.63875 -37.55445 -35.38547 -34.78701 -33.55871 -31.37891 -30.98737 -30.02761 -28.00689 -27.14712 -26.89264 -26.05538 -23.18610 -22.80473 -21.20989 -20.84396 -20.48501 -19.66170 -18.55016 -18.03453 -17.84598 -17.28898 -17.11513 -16.61050 -16.35978 -16.09373 -15.75843 -15.26672 -15.13497 -14.68683 -14.63538 -14.60231 -14.48995 -14.05506 -13.90257 -13.83983 -13.73946 -13.58714 -13.32740 -13.22842 -12.95951 -12.77533 -12.62467 -12.49367 -12.25671 -12.03107 -11.96484 -11.95237 -11.60593 -11.18803 -11.14016 -10.92205 -10.38077 -10.01946 -9.71775 -9.50137 -8.96662 -8.93905 -6.32897 1.06400 1.33724 1.38512 1.48882 1.59608 1.77334 1.85106 2.02558 2.30573 2.73083 2.99014 3.02029 3.12851 3.20638 3.39502 3.46451 3.62397 3.64547 3.83534 3.95378 4.00582 4.11938 4.20032 4.26302 4.32090 4.34586 4.39064 4.51993 4.57939 4.65653 4.73004 4.77314 4.80335 4.83252 4.88022 4.95235 5.02380 5.10252 5.12922 5.39201 5.58430 5.59628 5.68455 6.04619 6.10058 6.25199 6.93122 7.02679 7.06825 8.46723 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.002917 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.704147 B = 9596.192237 C =10422.640008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.616 5.616 3 C 0.107 3.893 4 C -0.122 4.122 5 C 0.032 3.968 6 H 0.059 0.941 7 N -0.478 5.478 8 C 0.030 3.970 9 C 0.099 3.901 10 H 0.112 0.888 11 C -0.114 4.114 12 C 0.070 3.930 13 H 0.190 0.810 14 C 0.051 3.949 15 N -0.619 5.619 16 C 0.546 3.454 17 O -0.568 6.568 18 C -0.096 4.096 19 S -0.198 6.198 20 C -0.612 4.612 21 H 0.076 0.924 22 C -0.020 4.020 23 N -0.913 5.913 24 Si 1.141 2.859 25 H -0.269 1.269 26 H -0.259 1.259 27 H -0.278 1.278 28 C 0.514 3.486 29 O -0.587 6.587 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.031 0.969 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.510 27.372 12.370 34.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.349 5.349 3 C -0.014 4.014 4 C -0.160 4.160 5 C -0.080 4.080 6 H 0.077 0.923 7 N -0.203 5.203 8 C -0.098 4.098 9 C -0.005 4.005 10 H 0.130 0.870 11 C -0.152 4.152 12 C -0.037 4.037 13 H 0.207 0.793 14 C -0.071 4.071 15 N -0.355 5.355 16 C 0.334 3.666 17 O -0.447 6.447 18 C -0.248 4.248 19 S 0.029 5.971 20 C -0.759 4.759 21 H 0.094 0.906 22 C -0.223 4.223 23 N -0.548 5.548 24 Si 0.958 3.042 25 H -0.194 1.194 26 H -0.183 1.183 27 H -0.204 1.204 28 C 0.301 3.699 29 O -0.466 6.466 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.118 0.882 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.214 24.973 12.054 32.122 hybrid contribution -0.657 -0.074 -0.004 0.661 sum -16.871 24.899 12.050 32.400 Atomic orbital electron populations 1.21706 0.77193 1.02803 1.03594 1.48309 1.07356 1.07702 1.71535 1.22332 0.89176 0.85912 1.03977 1.22928 0.98791 0.90699 1.03565 1.22635 0.92095 1.00788 0.92503 0.92300 1.65745 1.20982 1.10847 1.22734 1.23805 0.95437 0.89455 1.01143 1.24225 0.90950 1.01458 0.83819 0.87013 1.23952 1.02742 0.90121 0.98412 1.25080 0.84413 1.01713 0.92479 0.79272 1.23615 1.02976 0.80555 0.99987 1.49241 1.53495 1.11604 1.21160 1.19750 0.77552 0.83713 0.85619 1.90687 1.60759 1.23574 1.69664 1.23117 1.02947 1.02361 0.96359 1.85130 1.69749 1.17557 1.24702 1.24025 1.43866 1.02187 1.05815 0.90582 1.27917 0.93839 0.93550 1.06981 1.70887 1.43665 1.15783 1.24498 0.82678 0.76508 0.75704 0.69317 1.19394 1.18289 1.20350 1.21123 0.90046 0.84254 0.74453 1.90700 1.79534 1.23705 1.52709 0.92648 0.89761 0.89834 0.87746 0.88756 0.85129 0.88455 0.95052 0.88917 0.86402 0.88319 0.88300 0.90631 0.86975 0.88221 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 11.14 127.77 1.42 2.51 16 2 N -0.62 -9.65 3.33 -842.88 -2.81 -12.46 16 3 C 0.11 0.67 7.35 86.83 0.64 1.31 16 4 C -0.12 -0.84 6.43 31.66 0.20 -0.64 16 5 C 0.03 0.57 1.57 44.91 0.07 0.64 16 6 H 0.06 1.40 6.03 -2.39 -0.01 1.38 16 7 N -0.48 -7.73 5.21 -811.58 -4.23 -11.96 16 8 C 0.03 0.73 5.78 86.84 0.50 1.23 16 9 C 0.10 2.31 5.23 46.93 0.25 2.55 16 10 H 0.11 2.99 8.06 -2.39 -0.02 2.97 16 11 C -0.11 -1.41 6.79 33.46 0.23 -1.19 16 12 C 0.07 0.69 4.17 46.84 0.20 0.89 16 13 H 0.19 0.11 7.00 -2.39 -0.02 0.09 16 14 C 0.05 0.88 5.61 87.16 0.49 1.37 16 15 N -0.62 -17.39 2.95 -768.44 -2.26 -19.66 16 16 C 0.55 21.95 7.91 87.66 0.69 22.65 16 17 O -0.57 -28.37 16.21 -3.02 -0.05 -28.42 16 18 C -0.10 -4.06 5.44 71.24 0.39 -3.67 16 19 S -0.20 -11.33 19.60 -56.49 -1.11 -12.44 16 20 C -0.61 -35.86 9.50 67.95 0.65 -35.22 16 21 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 22 C -0.02 -1.18 5.49 84.86 0.47 -0.71 16 23 N -0.91 -59.09 13.67 21.65 0.30 -58.80 16 24 Si 1.14 49.65 29.92 68.60 2.05 51.70 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 C 0.51 12.62 7.30 87.90 0.64 13.26 16 29 O -0.59 -20.93 16.80 -3.03 -0.05 -20.98 16 30 H 0.05 0.99 7.53 -2.39 -0.02 0.98 16 31 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.13 0.09 5.97 -2.39 -0.01 0.07 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.03 1.04 7.16 -2.39 -0.02 1.02 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 39 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.08 1.36 5.37 -2.39 -0.01 1.35 16 43 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 44 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.26 17.57 7.13 -92.71 -0.66 16.90 16 Total: -1.00 -93.65 370.33 -0.22 -93.88 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.11 Total: 14.15 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.83 Total: 4.99 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -9.01 Total: -102.88 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.10 Total: -49.40 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Atomic # 16 Polarization: -11.33 SS G_CDS: -1.11 Total: -12.44 kcal Total: -93.65 -0.22 -93.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714983165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.426 kcal (2) G-P(sol) polarization free energy of solvation -93.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds