Wall clock time and date at job start Sat Apr 11 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35956 * 117.00289 * 2 1 4 4 C 1.37569 * 120.82881 * 180.02562 * 3 2 1 5 5 C 1.38039 * 114.25260 * 180.02562 * 4 3 2 6 6 C 1.47113 * 127.76287 * 180.02562 * 5 4 3 7 7 O 1.21631 * 119.99821 * 318.48876 * 6 5 4 8 8 N 1.34771 * 120.00297 * 138.48440 * 6 5 4 9 9 C 1.46932 * 120.62989 * 3.36054 * 8 6 5 10 10 C 1.52761 * 109.00809 * 233.58513 * 9 8 6 11 11 C 1.53045 * 109.38057 * 305.58459 * 10 9 8 12 12 C 1.53000 * 109.46023 * 181.26012 * 11 10 9 13 13 C 1.53001 * 109.46856 * 64.93251 * 12 11 10 14 14 N 1.46506 * 109.46959 * 179.97438 * 13 12 11 15 15 C 1.36934 * 119.99990 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99810 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47124 * 59.99918 * 19 17 15 21 21 H 1.48507 * 109.47235 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47224 * 299.99844 * 19 17 15 23 23 C 1.53046 * 109.53919 * 61.24323 * 11 10 9 24 24 C 1.46928 * 120.63241 * 183.63770 * 8 6 5 25 25 S 1.77239 * 104.48064 * 359.97438 * 5 4 3 26 26 N 1.30371 * 120.82567 * 0.02914 * 3 2 1 27 27 H 1.09002 * 109.46726 * 299.99672 * 1 2 3 28 28 H 1.09000 * 109.47105 * 59.99367 * 1 2 3 29 29 H 1.08995 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.07996 * 122.87422 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.58508 * 353.41474 * 9 8 6 32 32 H 1.08997 * 109.58781 * 113.84394 * 9 8 6 33 33 H 1.08995 * 109.56486 * 185.55369 * 10 9 8 34 34 H 1.08998 * 109.35925 * 65.49152 * 10 9 8 35 35 H 1.08999 * 109.46429 * 301.22356 * 11 10 9 36 36 H 1.08997 * 109.47321 * 184.93322 * 12 11 10 37 37 H 1.08999 * 109.47254 * 304.93445 * 12 11 10 38 38 H 1.08997 * 109.47214 * 300.00137 * 13 12 11 39 39 H 1.08999 * 109.47030 * 60.00057 * 13 12 11 40 40 H 0.96997 * 119.99908 * 0.02562 * 14 13 12 41 41 H 0.96997 * 119.99846 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.49719 * 178.68149 * 23 11 10 43 43 H 1.09001 * 109.52113 * 58.59686 * 23 11 10 44 44 H 1.09003 * 109.58306 * 246.15868 * 24 8 6 45 45 H 1.09000 * 109.58819 * 6.43808 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 3.4189 1.3031 -0.0005 5 6 3.9007 2.5967 0.0001 6 6 5.3050 3.0351 -0.0007 7 8 6.1211 2.4628 0.6963 8 7 5.6873 4.0707 -0.7738 9 6 4.7005 4.8186 -1.5649 10 6 5.1543 4.8525 -3.0231 11 6 6.5765 5.4127 -3.0995 12 6 7.0213 5.4768 -4.5620 13 6 6.1479 6.4809 -5.3170 14 7 6.5742 6.5427 -6.7174 15 6 5.9338 7.3798 -7.5916 16 1 5.1141 7.9940 -7.2490 17 6 6.3373 7.4380 -8.9186 18 7 7.3358 6.6890 -9.3362 19 14 5.4632 8.5793 -10.1113 20 1 5.5876 9.9808 -9.6367 21 1 6.0801 8.4562 -11.4566 22 1 4.0273 8.2086 -10.1890 23 6 7.5273 4.5040 -2.3169 24 6 7.0995 4.4696 -0.8463 25 16 2.4472 3.6110 0.0006 26 7 1.3522 2.3149 0.0006 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0644 0.4373 -0.0014 31 1 3.7298 4.3273 -1.4972 32 1 4.6240 5.8374 -1.1851 33 1 4.4819 5.4873 -3.6001 34 1 5.1394 3.8413 -3.4298 35 1 6.5959 6.4143 -2.6700 36 1 8.0634 5.7925 -4.6114 37 1 6.9182 4.4916 -5.0167 38 1 5.1058 6.1652 -5.2677 39 1 6.2510 7.4661 -4.8624 40 1 7.3100 5.9908 -7.0251 41 1 7.6180 6.7300 -10.2633 42 1 8.5436 4.8907 -2.3912 43 1 7.4904 3.4960 -2.7301 44 1 7.2226 5.4594 -0.4067 45 1 7.7110 3.7496 -0.3024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715167721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:12 Heat of formation + Delta-G solvation = -15.189759 kcal Electronic energy + Delta-G solvation = -26574.319990 eV Core-core repulsion = 22719.504398 eV Total energy + Delta-G solvation = -3854.815592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79362 -40.30317 -38.16964 -36.81209 -35.42893 -33.70110 -32.23521 -31.14833 -31.04776 -28.75904 -28.27802 -25.95208 -24.61021 -23.62152 -23.02795 -21.96466 -20.86044 -20.25260 -19.50363 -18.80089 -18.07023 -17.07547 -16.86025 -16.55175 -16.40186 -15.62810 -15.12165 -14.84682 -14.78728 -14.44832 -14.33071 -13.99082 -13.80644 -13.67909 -13.58399 -13.15676 -12.95400 -12.75385 -12.46371 -12.36114 -11.83243 -11.60901 -11.39617 -11.37096 -11.22759 -11.18020 -11.03869 -10.80054 -10.68405 -10.47443 -10.34223 -10.24474 -10.10167 -9.96946 -9.67858 -9.01072 -8.85480 -8.70027 -6.91395 -5.76342 -3.04944 -0.21797 0.64183 1.10964 1.84083 2.21212 2.60535 2.85230 3.43660 3.47837 3.49091 3.91698 4.35954 4.50096 4.56673 4.71784 4.72789 4.74688 4.82195 4.83455 4.86780 5.05285 5.10440 5.16189 5.23078 5.29538 5.48987 5.54188 5.60697 5.63523 5.68456 5.75749 5.77770 5.95343 6.00381 6.07770 6.24319 6.32458 6.39011 6.42097 6.58129 6.85492 6.88877 6.91000 7.60362 7.68841 8.42964 9.53581 10.12825 10.46815 11.46630 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.002281 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.547567 B =12271.439623 C =13615.504569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.309 3.691 4 C -0.134 4.134 5 C -0.179 4.179 6 C 0.595 3.405 7 O -0.519 6.519 8 N -0.595 5.595 9 C 0.091 3.909 10 C -0.131 4.131 11 C -0.083 4.083 12 C -0.121 4.121 13 C 0.152 3.848 14 N -0.735 5.735 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.130 4.130 24 C 0.114 3.886 25 S 0.303 5.697 26 N -0.519 5.519 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.176 0.824 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 -10.239 23.507 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.096 3.904 4 C -0.171 4.171 5 C -0.311 4.311 6 C 0.379 3.621 7 O -0.395 6.395 8 N -0.328 5.328 9 C -0.033 4.033 10 C -0.169 4.169 11 C -0.102 4.102 12 C -0.159 4.159 13 C 0.025 3.975 14 N -0.379 5.379 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.168 4.168 24 C -0.008 4.008 25 S 0.453 5.547 26 N -0.360 5.360 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.193 0.807 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.197 -9.103 23.818 27.462 hybrid contribution 0.376 -0.922 -0.963 1.386 sum -9.822 -10.025 22.854 26.820 Atomic orbital electron populations 1.23012 0.76449 1.03788 1.02692 1.86313 1.23204 1.22475 1.88062 1.19876 0.89706 0.85350 0.95480 1.20698 0.92522 0.98220 1.05622 1.25943 0.99633 0.97985 1.07544 1.16709 0.84744 0.80144 0.80462 1.90856 1.51990 1.55433 1.41237 1.48010 1.09692 1.30993 1.44109 1.22212 0.91457 0.97038 0.92580 1.21974 0.97869 1.02824 0.94248 1.21104 0.93784 0.98922 0.96388 1.21757 1.00349 1.00556 0.93207 1.20701 0.95533 0.95293 0.85986 1.42382 1.40795 1.50646 1.04064 1.19189 1.11745 1.16067 0.90087 0.91283 1.24753 0.98835 1.00262 0.97272 1.69651 1.29598 1.42969 1.16094 0.86263 0.78877 0.80506 0.80516 1.21269 1.21679 1.21276 1.22012 0.99936 1.01109 0.93772 1.21767 0.79831 1.01285 0.97885 1.85146 0.88957 1.11750 1.68816 1.76433 1.27123 1.01442 1.31005 0.92060 0.91920 0.87856 0.80664 0.89958 0.89974 0.89193 0.91247 0.90727 0.91783 0.91988 0.96314 0.96602 0.78350 0.93471 0.90088 0.91283 0.90725 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.43 101.05 1.05 1.28 16 2 O -0.29 -2.76 10.51 -19.60 -0.21 -2.96 16 3 C 0.31 3.15 7.36 -18.42 -0.14 3.02 16 4 C -0.13 -1.32 10.26 -39.90 -0.41 -1.73 16 5 C -0.18 -1.82 5.82 -36.06 -0.21 -2.03 16 6 C 0.59 6.80 7.64 -12.66 -0.10 6.71 16 7 O -0.52 -7.38 16.53 5.25 0.09 -7.29 16 8 N -0.60 -5.91 2.98 -174.41 -0.52 -6.42 16 9 C 0.09 0.79 5.95 -3.93 -0.02 0.77 16 10 C -0.13 -1.36 5.13 -26.83 -0.14 -1.50 16 11 C -0.08 -0.91 2.15 -90.57 -0.19 -1.11 16 12 C -0.12 -1.80 4.80 -26.73 -0.13 -1.93 16 13 C 0.15 2.92 6.02 -4.04 -0.02 2.90 16 14 N -0.73 -18.59 5.60 -59.90 -0.34 -18.92 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.13 -1.26 5.36 -26.61 -0.14 -1.40 16 24 C 0.11 1.05 6.43 -3.71 -0.02 1.02 16 25 S 0.30 2.73 20.78 -107.50 -2.23 0.50 16 26 N -0.52 -5.44 11.03 29.19 0.32 -5.12 16 27 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.08 0.69 3.87 -29.45 -0.11 0.58 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.98 6.50 -51.93 -0.34 0.64 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.36 6.53 -51.93 -0.34 0.02 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.21 7.67 -40.82 -0.31 9.89 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.93 7.02 -51.93 -0.36 0.57 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -33.36 377.66 -8.72 -42.08 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.51 Total: 4.15 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.72 Total: -1.41 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.19 Total: -58.11 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.12 Total: -10.26 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.23 Total: 0.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.36 -8.72 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715167721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.891 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds