Wall clock time and date at job start Sat Apr 11 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35956 * 117.00289 * 2 1 4 4 C 1.37569 * 120.82881 * 180.02562 * 3 2 1 5 5 C 1.38039 * 114.25260 * 180.02562 * 4 3 2 6 6 C 1.47113 * 127.76287 * 180.02562 * 5 4 3 7 7 O 1.21631 * 119.99821 * 318.48876 * 6 5 4 8 8 N 1.34771 * 120.00297 * 138.48440 * 6 5 4 9 9 C 1.46932 * 120.62989 * 3.36054 * 8 6 5 10 10 C 1.52761 * 109.00809 * 233.58513 * 9 8 6 11 11 C 1.53045 * 109.38057 * 305.58459 * 10 9 8 12 12 C 1.53000 * 109.46023 * 181.26012 * 11 10 9 13 13 C 1.53001 * 109.46856 * 64.93251 * 12 11 10 14 14 N 1.46506 * 109.46959 * 179.97438 * 13 12 11 15 15 C 1.36934 * 119.99990 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99810 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99915 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47124 * 59.99918 * 19 17 15 21 21 H 1.48507 * 109.47235 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47224 * 299.99844 * 19 17 15 23 23 C 1.53046 * 109.53919 * 61.24323 * 11 10 9 24 24 C 1.46928 * 120.63241 * 183.63770 * 8 6 5 25 25 S 1.77239 * 104.48064 * 359.97438 * 5 4 3 26 26 N 1.30371 * 120.82567 * 0.02914 * 3 2 1 27 27 H 1.09002 * 109.46726 * 299.99672 * 1 2 3 28 28 H 1.09000 * 109.47105 * 59.99367 * 1 2 3 29 29 H 1.08995 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.07996 * 122.87422 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.58508 * 353.41474 * 9 8 6 32 32 H 1.08997 * 109.58781 * 113.84394 * 9 8 6 33 33 H 1.08995 * 109.56486 * 185.55369 * 10 9 8 34 34 H 1.08998 * 109.35925 * 65.49152 * 10 9 8 35 35 H 1.08999 * 109.46429 * 301.22356 * 11 10 9 36 36 H 1.08997 * 109.47321 * 184.93322 * 12 11 10 37 37 H 1.08999 * 109.47254 * 304.93445 * 12 11 10 38 38 H 1.08997 * 109.47214 * 300.00137 * 13 12 11 39 39 H 1.08999 * 109.47030 * 60.00057 * 13 12 11 40 40 H 0.96997 * 119.99908 * 0.02562 * 14 13 12 41 41 H 0.96997 * 119.99846 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.49719 * 178.68149 * 23 11 10 43 43 H 1.09001 * 109.52113 * 58.59686 * 23 11 10 44 44 H 1.09003 * 109.58306 * 246.15868 * 24 8 6 45 45 H 1.09000 * 109.58819 * 6.43808 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 3.4189 1.3031 -0.0005 5 6 3.9007 2.5967 0.0001 6 6 5.3050 3.0351 -0.0007 7 8 6.1211 2.4628 0.6963 8 7 5.6873 4.0707 -0.7738 9 6 4.7005 4.8186 -1.5649 10 6 5.1543 4.8525 -3.0231 11 6 6.5765 5.4127 -3.0995 12 6 7.0213 5.4768 -4.5620 13 6 6.1479 6.4809 -5.3170 14 7 6.5742 6.5427 -6.7174 15 6 5.9338 7.3798 -7.5916 16 1 5.1141 7.9940 -7.2490 17 6 6.3373 7.4380 -8.9186 18 7 7.3358 6.6890 -9.3362 19 14 5.4632 8.5793 -10.1113 20 1 5.5876 9.9808 -9.6367 21 1 6.0801 8.4562 -11.4566 22 1 4.0273 8.2086 -10.1890 23 6 7.5273 4.5040 -2.3169 24 6 7.0995 4.4696 -0.8463 25 16 2.4472 3.6110 0.0006 26 7 1.3522 2.3149 0.0006 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0644 0.4373 -0.0014 31 1 3.7298 4.3273 -1.4972 32 1 4.6240 5.8374 -1.1851 33 1 4.4819 5.4873 -3.6001 34 1 5.1394 3.8413 -3.4298 35 1 6.5959 6.4143 -2.6700 36 1 8.0634 5.7925 -4.6114 37 1 6.9182 4.4916 -5.0167 38 1 5.1058 6.1652 -5.2677 39 1 6.2510 7.4661 -4.8624 40 1 7.3100 5.9908 -7.0251 41 1 7.6180 6.7300 -10.2633 42 1 8.5436 4.8907 -2.3912 43 1 7.4904 3.4960 -2.7301 44 1 7.2226 5.4594 -0.4067 45 1 7.7110 3.7496 -0.3024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715167721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:11 Heat of formation + Delta-G solvation = -38.499215 kcal Electronic energy + Delta-G solvation = -26575.330764 eV Core-core repulsion = 22719.504398 eV Total energy + Delta-G solvation = -3855.826366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59372 -41.05909 -39.12156 -37.54466 -36.90956 -35.13472 -33.29874 -32.64620 -31.87315 -30.03502 -29.02142 -27.03945 -25.85381 -24.44856 -24.44580 -22.99655 -22.02820 -21.19222 -20.28649 -19.60377 -19.09354 -18.77017 -17.69605 -17.25415 -17.20166 -16.66468 -16.46982 -15.88395 -15.76748 -15.49173 -15.35343 -15.27970 -14.96577 -14.78490 -14.49284 -14.29379 -14.11681 -13.93635 -13.30434 -13.04873 -12.98997 -12.80585 -12.56655 -12.52417 -12.32330 -12.25369 -12.13641 -12.09632 -12.06384 -11.89802 -11.63144 -11.50667 -11.19395 -11.18138 -10.90564 -10.85303 -9.83417 -9.40141 -8.97016 -7.93977 -5.22621 -0.99345 -0.10450 0.37503 1.06437 1.42089 1.48007 1.51199 1.57301 1.80280 2.17463 2.57406 3.14943 3.39697 3.61675 3.68215 3.74071 3.86609 4.04429 4.07957 4.19999 4.27988 4.31406 4.33629 4.40343 4.46223 4.47130 4.59872 4.63664 4.70112 4.73242 4.82685 4.91543 4.94312 4.98319 5.06787 5.09107 5.20140 5.31876 5.36391 5.49771 5.52429 5.59144 5.91158 6.07779 6.28983 6.75749 7.34451 8.13114 8.34257 9.29698 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.002281 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.547567 B =12271.439623 C =13615.504569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.304 3.696 4 C -0.137 4.137 5 C -0.191 4.191 6 C 0.595 3.405 7 O -0.553 6.553 8 N -0.592 5.592 9 C 0.094 3.906 10 C -0.129 4.129 11 C -0.074 4.074 12 C -0.109 4.109 13 C 0.149 3.851 14 N -0.751 5.751 15 C -0.245 4.245 16 H 0.077 0.923 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.277 1.277 23 C -0.123 4.123 24 C 0.115 3.885 25 S 0.337 5.663 26 N -0.537 5.537 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.182 0.818 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.021 0.979 40 H 0.372 0.628 41 H 0.251 0.749 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 -9.340 24.572 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.091 3.909 4 C -0.175 4.175 5 C -0.322 4.322 6 C 0.380 3.620 7 O -0.432 6.432 8 N -0.323 5.323 9 C -0.029 4.029 10 C -0.167 4.167 11 C -0.093 4.093 12 C -0.147 4.147 13 C 0.024 3.976 14 N -0.394 5.394 15 C -0.377 4.377 16 H 0.095 0.905 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.223 1.223 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.006 4.006 25 S 0.488 5.512 26 N -0.378 5.378 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.200 0.800 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.203 0.797 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.422 -8.180 24.916 28.604 hybrid contribution 0.697 -1.206 -1.253 1.873 sum -10.726 -9.386 23.663 27.624 Atomic orbital electron populations 1.23235 0.75032 1.05562 1.02518 1.86307 1.24659 1.22184 1.87907 1.19944 0.89833 0.85603 0.95508 1.20827 0.92672 0.98533 1.05439 1.25880 0.99593 0.98591 1.08159 1.16837 0.84892 0.80011 0.80212 1.90836 1.52983 1.56562 1.42802 1.48104 1.10277 1.30473 1.43481 1.22284 0.91174 0.98191 0.91294 1.21925 0.97398 1.02037 0.95376 1.21031 0.94367 1.00166 0.93742 1.21627 0.99317 0.98513 0.95198 1.20919 0.96578 0.96690 0.83453 1.42672 1.40415 1.50057 1.06241 1.19635 1.11505 1.15787 0.90747 0.90505 1.25609 1.00016 1.02334 0.99206 1.69815 1.31431 1.44961 1.16067 0.85200 0.77915 0.78817 0.77785 1.20242 1.22270 1.20311 1.21934 1.00205 1.00135 0.93857 1.21826 0.79303 1.02229 0.97283 1.84942 0.87621 1.10593 1.68050 1.76361 1.28003 1.02024 1.31430 0.92032 0.92233 0.85185 0.80046 0.89578 0.87577 0.89453 0.92380 0.89287 0.92238 0.93114 0.95592 0.96105 0.79682 0.94046 0.89011 0.92443 0.88547 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.43 113.37 1.18 1.55 16 2 O -0.30 -5.46 10.51 -93.06 -0.98 -6.44 16 3 C 0.30 5.98 7.36 84.75 0.62 6.60 16 4 C -0.14 -2.63 10.26 22.06 0.23 -2.41 16 5 C -0.19 -3.69 5.82 24.55 0.14 -3.55 16 6 C 0.59 13.03 7.64 86.57 0.66 13.69 16 7 O -0.55 -15.53 16.53 -4.13 -0.07 -15.60 16 8 N -0.59 -10.67 2.98 -823.96 -2.45 -13.13 16 9 C 0.09 1.41 5.95 86.22 0.51 1.93 16 10 C -0.13 -2.45 5.13 30.53 0.16 -2.29 16 11 C -0.07 -1.48 2.15 -10.76 -0.02 -1.51 16 12 C -0.11 -3.14 4.80 30.59 0.15 -2.99 16 13 C 0.15 5.58 6.02 86.38 0.52 6.10 16 14 N -0.75 -38.01 5.60 -343.44 -1.92 -39.93 16 15 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 18 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 19 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 C -0.12 -2.17 5.36 30.67 0.16 -2.01 16 24 C 0.11 1.87 6.43 86.36 0.55 2.43 16 25 S 0.34 5.55 20.78 -56.49 -1.17 4.38 16 26 N -0.54 -10.68 11.03 -175.19 -1.93 -12.61 16 27 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 28 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.09 1.26 3.87 -16.68 -0.06 1.20 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.72 6.50 -2.39 -0.02 1.71 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.03 0.95 6.53 -2.39 -0.02 0.94 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.37 20.14 7.67 -92.71 -0.71 19.43 16 41 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.62 7.02 -2.39 -0.02 1.61 16 Total: -1.00 -71.32 377.66 0.20 -71.12 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.25 Total: 23.18 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.18 Total: 0.64 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -6.03 Total: -125.18 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -1.05 Total: -22.04 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -1.17 Total: 4.38 kcal Total: -71.32 0.20 -71.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715167721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.619 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds