Wall clock time and date at job start Sat Apr 11 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.46499 * 120.00136 * 270.00278 * 3 2 1 5 5 C 1.52999 * 109.47276 * 269.99459 * 4 3 2 6 6 N 1.46893 * 109.47361 * 180.02562 * 5 4 3 7 7 C 1.46904 * 111.00218 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47372 * 180.02562 * 7 6 5 9 9 O 1.21296 * 119.99384 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99875 * 180.02562 * 8 7 6 11 11 C 1.37099 * 119.99586 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00120 * 359.97438 * 11 10 8 13 13 C 1.38945 * 119.99780 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00396 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47269 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47475 * 119.99531 * 15 13 11 18 18 H 1.48503 * 109.47352 * 239.99494 * 15 13 11 19 19 C 1.34784 * 119.99893 * 90.00083 * 3 2 1 20 20 O 1.21274 * 119.99897 * 179.73022 * 19 3 2 21 21 C 1.50695 * 119.99635 * 0.02562 * 19 3 2 22 22 C 1.50707 * 109.47011 * 180.02562 * 21 19 3 23 23 C 1.33381 * 125.20456 * 89.99528 * 22 21 19 24 24 C 1.38426 * 114.92297 * 179.97438 * 23 22 21 25 25 C 1.33389 * 114.92012 * 0.02562 * 24 23 22 26 26 S 1.75882 * 125.20014 * 269.69727 * 22 21 19 27 27 H 1.08997 * 109.47172 * 299.99762 * 1 2 3 28 28 H 1.08998 * 109.47554 * 59.99767 * 1 2 3 29 29 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47172 * 240.00238 * 2 1 3 31 31 H 1.08998 * 109.47554 * 120.00233 * 2 1 3 32 32 H 1.08998 * 109.47416 * 29.99674 * 4 3 2 33 33 H 1.09008 * 109.47058 * 150.00274 * 4 3 2 34 34 H 1.08998 * 109.47074 * 300.00425 * 5 4 3 35 35 H 1.09007 * 109.46853 * 59.99785 * 5 4 3 36 36 H 1.00904 * 111.00311 * 56.04836 * 6 5 4 37 37 H 1.09000 * 109.46509 * 299.99915 * 7 6 5 38 38 H 1.08996 * 109.47448 * 59.99672 * 7 6 5 39 39 H 0.96993 * 120.00231 * 359.97438 * 10 8 7 40 40 H 0.96996 * 120.00824 * 180.02562 * 14 13 11 41 41 H 1.09005 * 109.47403 * 300.00056 * 21 19 3 42 42 H 1.09002 * 109.47422 * 60.00295 * 21 19 3 43 43 H 1.08003 * 122.54135 * 359.96556 * 23 22 21 44 44 H 1.07993 * 122.54049 * 180.02562 * 24 23 22 45 45 H 1.07994 * 125.20424 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7074 1.8316 -1.7104 6 7 3.9524 2.5246 -2.9822 7 6 5.3330 2.3152 -3.4384 8 6 5.5466 3.0399 -4.7424 9 8 4.6378 3.6685 -5.2427 10 7 6.7469 2.9886 -5.3531 11 6 6.9410 3.6474 -6.5397 12 1 6.1319 4.2071 -6.9852 13 6 8.1783 3.5941 -7.1696 14 7 9.1627 2.9127 -6.6278 15 14 8.4425 4.4912 -8.7866 16 1 7.1871 5.1786 -9.1823 17 1 9.5264 5.4934 -8.6254 18 1 8.8240 3.5143 -9.8381 19 6 2.2430 2.0165 1.1673 20 8 2.6519 3.1583 1.1673 21 6 1.9923 1.3059 2.4723 22 6 2.3181 2.2294 3.6178 23 6 1.4565 3.0631 4.2023 24 6 1.9837 3.8152 5.2380 25 6 3.2737 3.5924 5.4942 26 16 3.8906 2.3672 4.3934 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 4.3882 2.2156 -0.9507 35 1 3.8745 0.7623 -1.8407 36 1 3.7423 3.5084 -2.9043 37 1 6.0253 2.7020 -2.6906 38 1 5.5109 1.2494 -3.5813 39 1 7.4734 2.4856 -4.9532 40 1 10.0266 2.8757 -7.0673 41 1 0.9444 1.0113 2.5302 42 1 2.6229 0.4186 2.5298 43 1 0.4256 3.1454 3.8910 44 1 1.3953 4.5281 5.7962 45 1 3.8498 4.0853 6.2633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716202913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:28 Heat of formation + Delta-G solvation = -35.389898 kcal Electronic energy + Delta-G solvation = -25946.042332 eV Core-core repulsion = 22090.350796 eV Total energy + Delta-G solvation = -3855.691536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35422 -38.29026 -37.98337 -36.55186 -35.30506 -33.83412 -32.64781 -31.33463 -31.10744 -29.21909 -27.46377 -25.86339 -24.11392 -23.90726 -23.26334 -22.07449 -19.72541 -19.39975 -19.04771 -17.87554 -17.58220 -17.37608 -16.51080 -16.13244 -15.68233 -15.49413 -15.42174 -14.56382 -14.37706 -14.25675 -14.06262 -13.85552 -13.63460 -13.35166 -13.17522 -13.08800 -12.92802 -12.77273 -12.65597 -12.33881 -12.13689 -12.00085 -11.91397 -11.51476 -11.47472 -11.44646 -11.10872 -10.99777 -10.95496 -10.32540 -10.20672 -10.08586 -9.49957 -8.98743 -8.92233 -8.67841 -8.43363 -8.05721 -7.93794 -6.39614 -3.80371 0.72041 1.38449 1.75421 2.37716 2.43927 2.76107 3.18074 3.28416 3.36042 3.93329 4.14247 4.20563 4.29455 4.45366 4.54638 4.66523 4.79480 4.82054 4.95108 5.00463 5.02665 5.19771 5.20243 5.27027 5.29714 5.31198 5.38770 5.39412 5.52380 5.76343 5.79085 5.82904 5.87847 5.92519 6.01111 6.01763 6.21264 6.23919 6.32613 7.10841 7.20263 7.57568 7.65881 7.94274 8.08795 8.63530 9.20078 9.56627 10.08060 10.78266 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.001887 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.509713 B =14836.522209 C =15923.592902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.611 5.611 4 C 0.118 3.882 5 C 0.046 3.954 6 N -0.667 5.667 7 C 0.053 3.947 8 C 0.442 3.558 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.513 3.487 20 O -0.522 6.522 21 C -0.069 4.069 22 C -0.160 4.160 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.214 4.214 26 S 0.109 5.891 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 -8.780 25.134 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.345 5.345 4 C -0.005 4.005 5 C -0.084 4.084 6 N -0.300 5.300 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.427 4.427 12 H 0.122 0.878 13 C -0.181 4.181 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.299 3.701 20 O -0.397 6.397 21 C -0.111 4.111 22 C -0.278 4.278 23 C -0.158 4.158 24 C -0.164 4.164 25 C -0.349 4.349 26 S 0.373 5.627 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.170 0.830 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.196 -8.953 24.141 29.402 hybrid contribution -0.108 1.261 0.254 1.291 sum -14.304 -7.692 24.395 29.307 Atomic orbital electron populations 1.22226 0.95612 1.02520 1.02765 1.21650 0.94666 0.82221 1.03704 1.47975 1.66105 1.14509 1.05946 1.21404 0.96546 0.98719 0.83808 1.22251 0.95993 0.99622 0.90573 1.60018 1.23725 1.18364 1.27863 1.21654 0.89089 1.01175 0.96109 1.19799 0.83975 0.86218 0.87301 1.90522 1.42349 1.46556 1.67256 1.41867 1.10683 1.46127 1.21433 1.19759 0.97892 1.27434 0.97659 0.87845 1.25272 0.95201 0.97689 0.99906 1.69621 1.03166 1.41500 1.40081 0.85792 0.78488 0.78904 0.81106 1.19207 1.20777 1.20765 1.20487 0.77740 0.86857 0.84996 1.90758 1.44142 1.17688 1.87068 1.20224 1.04526 0.97290 0.89068 1.23803 0.96927 1.04690 1.02384 1.20045 1.01028 0.97225 0.97548 1.20119 0.94922 1.01974 0.99414 1.25609 0.99137 1.04707 1.05480 1.84278 1.12001 1.37990 1.28417 0.92522 0.91827 0.91234 0.89586 0.90333 0.89339 0.89774 0.95159 0.91180 0.82973 0.93836 0.89635 0.77457 0.91944 0.87052 0.87827 0.84552 0.84334 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.10 0.58 5.93 -4.04 -0.02 0.56 16 3 N -0.61 -5.72 2.47 -173.69 -0.43 -6.15 16 4 C 0.12 1.35 5.67 -4.04 -0.02 1.33 16 5 C 0.05 0.62 6.01 -3.83 -0.02 0.59 16 6 N -0.67 -11.28 6.13 -115.06 -0.70 -11.99 16 7 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 8 C 0.44 10.75 7.82 -10.99 -0.09 10.66 16 9 O -0.58 -16.22 15.78 5.54 0.09 -16.13 16 10 N -0.56 -14.66 5.29 -10.96 -0.06 -14.72 16 11 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 12 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 13 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 15 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.51 5.63 7.67 -10.98 -0.08 5.54 16 20 O -0.52 -8.09 15.62 5.56 0.09 -8.00 16 21 C -0.07 -0.52 4.75 -29.03 -0.14 -0.66 16 22 C -0.16 -1.52 5.00 -36.00 -0.18 -1.70 16 23 C -0.13 -1.17 10.05 -41.21 -0.41 -1.58 16 24 C -0.13 -1.15 10.18 -41.21 -0.42 -1.57 16 25 C -0.21 -1.84 11.23 29.04 0.33 -1.51 16 26 S 0.11 1.04 23.33 -107.50 -2.51 -1.47 16 27 H 0.06 0.27 7.22 -51.93 -0.38 -0.10 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.08 0.31 6.44 -51.93 -0.33 -0.03 16 32 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.08 1.12 7.43 -51.92 -0.39 0.74 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.35 6.27 8.43 -39.29 -0.33 5.94 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 41 H 0.11 0.57 7.19 -51.93 -0.37 0.19 16 42 H 0.10 0.59 7.40 -51.93 -0.38 0.20 16 43 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -34.94 395.05 -9.49 -44.43 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.66 Total: 11.95 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.96 Total: 3.99 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.47 Total: -57.05 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.17 Total: -24.14 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.94 -9.49 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716202913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.039 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds