Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99954 * 2 1 4 4 H 1.07998 * 119.99803 * 147.58693 * 3 2 1 5 5 C 1.38808 * 120.00060 * 327.31408 * 3 2 1 6 6 N 1.31615 * 120.00337 * 162.46943 * 5 3 2 7 7 Si 1.86802 * 119.99695 * 342.46881 * 5 3 2 8 8 H 1.48510 * 109.47193 * 87.37477 * 7 5 3 9 9 H 1.48499 * 109.47219 * 207.36982 * 7 5 3 10 10 H 1.48493 * 109.47282 * 327.37528 * 7 5 3 11 11 C 1.46503 * 120.00074 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47304 * 270.00304 * 11 2 1 13 13 H 1.08997 * 109.47093 * 60.00125 * 12 11 2 14 14 O 1.42902 * 109.47445 * 299.99911 * 12 11 2 15 15 C 1.53003 * 109.47106 * 179.97438 * 12 11 2 16 16 N 1.46499 * 109.47142 * 185.00037 * 15 12 11 17 17 C 1.46496 * 120.00296 * 90.00175 * 16 15 12 18 18 C 1.34784 * 119.99645 * 270.00138 * 16 15 12 19 19 O 1.21622 * 120.00384 * 4.46918 * 18 16 15 20 20 C 1.47264 * 119.99392 * 184.46811 * 18 16 15 21 21 C 1.35214 * 123.13841 * 186.07169 * 20 18 16 22 22 S 1.70943 * 108.82461 * 179.97438 * 21 20 18 23 23 C 1.70763 * 91.13211 * 0.02562 * 22 21 20 24 24 C 1.50697 * 124.72239 * 180.02562 * 23 22 21 25 25 C 1.53004 * 117.49756 * 8.60183 * 24 23 22 26 26 C 1.53000 * 60.00159 * 252.50664 * 25 24 23 27 27 N 1.28655 * 110.55862 * 359.76666 * 23 22 21 28 28 H 1.08997 * 109.46884 * 90.97111 * 1 2 3 29 29 H 1.09004 * 109.47004 * 210.96866 * 1 2 3 30 30 H 1.08997 * 109.47154 * 330.96492 * 1 2 3 31 31 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46770 * 30.00159 * 11 2 1 33 33 H 1.08997 * 109.46943 * 150.00337 * 11 2 1 34 34 H 0.96697 * 113.99789 * 300.00644 * 14 12 11 35 35 H 1.08999 * 109.47225 * 305.00194 * 15 12 11 36 36 H 1.09003 * 109.46816 * 64.99937 * 15 12 11 37 37 H 1.09002 * 109.46859 * 94.92503 * 17 16 15 38 38 H 1.08999 * 109.47283 * 214.93029 * 17 16 15 39 39 H 1.09000 * 109.47113 * 334.93099 * 17 16 15 40 40 H 1.07999 * 125.58787 * 359.96754 * 21 20 18 41 41 H 1.09003 * 115.55247 * 154.30068 * 24 23 22 42 42 H 1.09008 * 117.49632 * 359.97438 * 25 24 23 43 43 H 1.09003 * 117.49937 * 145.01407 * 25 24 23 44 44 H 1.08998 * 117.49938 * 252.51074 * 26 25 24 45 45 H 1.08993 * 117.51767 * 107.47724 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1035 1.2588 0.5013 5 6 1.6205 2.2929 -0.6492 6 7 2.0758 3.4969 -0.3746 7 14 0.2622 2.0736 -1.9127 8 1 -1.0562 2.0849 -1.2292 9 1 0.3185 3.1835 -2.8976 10 1 0.4442 0.7783 -2.6155 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 1 1.5001 -1.8400 1.9570 14 8 3.2248 -0.7137 2.1166 15 6 3.2170 -3.0352 1.4438 16 7 3.3568 -3.5177 2.8199 17 6 2.3320 -4.3905 3.3978 18 6 4.4284 -3.1586 3.5543 19 8 5.2375 -2.3698 3.1042 20 6 4.6196 -3.7213 4.9017 21 6 5.6023 -3.3182 5.7385 22 16 5.4859 -4.2065 7.1943 23 6 4.1336 -5.0647 6.6022 24 6 3.3885 -6.1272 7.3683 25 6 3.7489 -6.3186 8.8429 26 6 4.1753 -7.3631 7.8094 27 7 3.8360 -4.6743 5.4130 28 1 -0.3633 -0.0174 -1.0275 29 1 -0.3633 -0.8812 0.5288 30 1 -0.3633 0.8985 0.4988 31 1 1.7057 4.2704 -0.8280 32 1 1.6084 -2.0286 -0.5130 33 1 3.1499 -1.1386 -0.5133 34 1 4.0872 -0.5453 1.7129 35 1 2.6693 -3.7708 0.8547 36 1 4.2053 -2.8847 1.0092 37 1 2.6313 -5.4317 3.2771 38 1 2.2190 -4.1655 4.4584 39 1 1.3831 -4.2239 2.8880 40 1 6.3399 -2.5595 5.5224 41 1 2.3464 -6.2697 7.0820 42 1 4.5253 -5.6763 9.2587 43 1 2.9439 -6.5870 9.5271 44 1 3.6509 -8.3186 7.8135 45 1 5.2318 -7.4078 7.5450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717945174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = 32.684913 kcal Electronic energy + Delta-G solvation = -27263.914787 eV Core-core repulsion = 23411.175197 eV Total energy + Delta-G solvation = -3852.739590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.79843 -39.08701 -37.62217 -37.07901 -35.38934 -34.47200 -31.54329 -30.84048 -29.96958 -27.27885 -26.62129 -26.00183 -25.39347 -23.51160 -22.99489 -21.80645 -20.81241 -20.42472 -19.42140 -18.38923 -16.88892 -16.70558 -16.42918 -16.13515 -15.77452 -15.47463 -15.23253 -14.80551 -14.46875 -14.29825 -14.09020 -13.83360 -13.48681 -13.26198 -12.85334 -12.81967 -12.60114 -12.56459 -12.34907 -12.17176 -12.05662 -11.88431 -11.48845 -11.35545 -11.11908 -11.06819 -10.52436 -10.49797 -10.28559 -10.07112 -10.01893 -9.88895 -9.76740 -9.55321 -9.47221 -9.08658 -8.57831 -8.28032 -6.72951 -5.83411 -3.25373 0.25643 0.90597 1.32463 1.77722 3.03619 3.25544 3.35567 3.41746 3.53668 3.54665 3.57713 4.20981 4.35815 4.39868 4.63665 4.70561 4.86355 4.95021 5.05490 5.07688 5.13732 5.27102 5.29793 5.40260 5.45229 5.46593 5.49736 5.53884 5.57756 5.72788 5.78283 5.94043 6.03759 6.04771 6.29107 6.35226 6.56432 6.65526 6.74101 6.80314 7.15695 7.45106 8.12792 8.23660 8.49839 8.55957 9.08329 9.84028 10.18275 11.32903 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025153 B = 0.002357 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.926734 B =11877.176012 C =12307.529120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.603 5.603 3 C -0.251 4.251 4 H 0.087 0.913 5 C 0.023 3.977 6 N -0.911 5.911 7 Si 0.892 3.108 8 H -0.289 1.289 9 H -0.306 1.306 10 H -0.278 1.278 11 C 0.123 3.877 12 C 0.074 3.926 13 H 0.084 0.916 14 O -0.536 6.536 15 C 0.082 3.918 16 N -0.593 5.593 17 C 0.088 3.912 18 C 0.594 3.406 19 O -0.523 6.523 20 C 0.020 3.980 21 C -0.225 4.225 22 S 0.204 5.796 23 C 0.049 3.951 24 C -0.084 4.084 25 C -0.170 4.170 26 C -0.160 4.160 27 N -0.434 5.434 28 H 0.006 0.994 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.261 0.739 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.371 0.629 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.191 0.809 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 -25.433 18.210 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.325 5.325 3 C -0.379 4.379 4 H 0.105 0.895 5 C -0.175 4.175 6 N -0.554 5.554 7 Si 0.723 3.277 8 H -0.217 1.217 9 H -0.235 1.235 10 H -0.204 1.204 11 C -0.005 4.005 12 C 0.011 3.989 13 H 0.101 0.899 14 O -0.340 6.340 15 C -0.041 4.041 16 N -0.324 5.324 17 C -0.055 4.055 18 C 0.378 3.622 19 O -0.399 6.399 20 C -0.115 4.115 21 C -0.367 4.367 22 S 0.461 5.539 23 C -0.229 4.229 24 C -0.105 4.105 25 C -0.208 4.208 26 C -0.199 4.199 27 N -0.150 5.150 28 H 0.024 0.976 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.218 0.782 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.208 0.792 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.376 -25.029 18.908 31.672 hybrid contribution -0.683 0.339 -2.083 2.218 sum 3.693 -24.690 16.825 30.105 Atomic orbital electron populations 1.21353 0.85059 0.99960 0.97446 1.43939 1.00309 1.02120 1.86175 1.18911 1.05554 0.85787 1.27697 0.89546 1.25416 0.98237 0.95455 0.98422 1.69832 1.44720 0.97517 1.43328 0.86838 0.82111 0.76056 0.82668 1.21661 1.23458 1.20371 1.21436 0.97144 0.88598 0.93369 1.22991 0.93972 0.85641 0.96343 0.89853 1.86579 1.32838 1.58836 1.55750 1.22436 1.02634 0.97634 0.81427 1.47501 1.22031 1.48986 1.13932 1.22018 0.89886 0.93273 1.00333 1.16973 0.81716 0.80743 0.82743 1.90798 1.44688 1.33530 1.70902 1.20475 0.95052 0.97883 0.98062 1.26637 1.05109 1.07023 0.97949 1.82705 1.27034 1.29087 1.15044 1.26327 0.99496 1.02218 0.94892 1.20390 0.99759 0.94941 0.95456 1.23168 1.04079 1.02659 0.90857 1.23155 1.01025 0.93644 1.02038 1.67218 1.26240 1.11875 1.09659 0.97599 0.95231 0.92685 0.92941 0.93823 0.92172 0.78218 0.89986 0.89687 0.92747 0.89300 0.92042 0.79209 0.84740 0.88295 0.87105 0.87370 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 8.45 59.85 0.51 2.94 16 2 N -0.60 -14.81 2.55 -181.12 -0.46 -15.27 16 3 C -0.25 -7.27 9.49 -15.06 -0.14 -7.41 16 4 H 0.09 2.69 7.49 -52.49 -0.39 2.30 16 5 C 0.02 0.70 5.28 -17.43 -0.09 0.61 16 6 N -0.91 -29.08 13.97 55.49 0.78 -28.30 16 7 Si 0.89 23.48 24.10 -169.99 -4.10 19.38 16 8 H -0.29 -7.38 6.85 56.52 0.39 -7.00 16 9 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 10 H -0.28 -7.17 6.76 56.52 0.38 -6.79 16 11 C 0.12 2.40 5.39 -4.04 -0.02 2.37 16 12 C 0.07 1.33 3.48 -26.73 -0.09 1.24 16 13 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 14 O -0.54 -11.57 10.95 -47.72 -0.52 -12.09 16 15 C 0.08 1.19 5.08 -4.04 -0.02 1.17 16 16 N -0.59 -8.65 2.86 -182.91 -0.52 -9.17 16 17 C 0.09 1.03 9.23 59.84 0.55 1.59 16 18 C 0.59 9.63 7.33 -12.59 -0.09 9.54 16 19 O -0.52 -9.86 15.03 -7.23 -0.11 -9.97 16 20 C 0.02 0.27 6.44 -84.53 -0.54 -0.28 16 21 C -0.23 -2.60 10.62 29.66 0.31 -2.28 16 22 S 0.20 1.62 21.65 -107.50 -2.33 -0.71 16 23 C 0.05 0.45 6.99 -13.61 -0.10 0.35 16 24 C -0.08 -0.52 6.33 -91.77 -0.58 -1.10 16 25 C -0.17 -0.70 10.01 -26.73 -0.27 -0.97 16 26 C -0.16 -0.70 10.23 -26.73 -0.27 -0.97 16 27 N -0.43 -5.11 6.92 -8.51 -0.06 -5.17 16 28 H 0.01 0.14 5.12 -51.93 -0.27 -0.12 16 29 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.05 1.34 6.91 -51.93 -0.36 0.99 16 31 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 32 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.06 1.18 8.04 -51.93 -0.42 0.77 16 34 H 0.37 7.74 8.61 45.56 0.39 8.13 16 35 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.08 1.29 7.49 -51.93 -0.39 0.90 16 37 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 38 H 0.09 1.10 5.72 -51.93 -0.30 0.80 16 39 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.19 2.09 8.04 -52.49 -0.42 1.67 16 41 H 0.13 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.39 7.21 -51.92 -0.37 0.02 16 43 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -36.26 377.10 -8.39 -44.66 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.90 Total: 4.17 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.85 Total: 6.79 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.27 Total: -57.92 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.63 Total: -22.06 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.10 Total: 19.38 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.33 Total: -0.71 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.26 -8.39 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717945174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.343 kcal (2) G-P(sol) polarization free energy of solvation -36.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds