Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99839 * 2 1 4 4 H 1.07994 * 120.00124 * 202.71008 * 3 2 1 5 5 C 1.38818 * 120.00059 * 22.70960 * 3 2 1 6 6 N 1.31624 * 119.99857 * 11.50694 * 5 3 2 7 7 Si 1.86799 * 119.99788 * 191.50601 * 5 3 2 8 8 H 1.48500 * 109.47404 * 60.00396 * 7 5 3 9 9 H 1.48506 * 109.46818 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47321 * 299.99919 * 7 5 3 11 11 C 1.46490 * 120.00197 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47065 * 270.00075 * 11 2 1 13 13 O 1.42897 * 109.47157 * 65.00019 * 12 11 2 14 14 C 1.42908 * 113.99792 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46840 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47064 * 65.00558 * 15 14 13 17 17 C 1.34774 * 119.99811 * 179.97438 * 16 15 14 18 18 O 1.21636 * 120.00282 * 359.97438 * 17 16 15 19 19 C 1.47273 * 119.99977 * 180.26909 * 17 16 15 20 20 C 1.35203 * 123.13990 * 179.74770 * 19 17 16 21 21 S 1.70946 * 108.82297 * 180.02562 * 20 19 17 22 22 C 1.70764 * 91.12971 * 0.02562 * 21 20 19 23 23 C 1.50702 * 124.72013 * 180.02562 * 22 21 20 24 24 C 1.52998 * 117.50095 * 8.59373 * 23 22 21 25 25 C 1.53001 * 60.00308 * 252.51313 * 24 23 22 26 26 N 1.28652 * 110.56012 * 359.72583 * 22 21 20 27 27 H 1.09004 * 109.47031 * 273.91739 * 1 2 3 28 28 H 1.09001 * 109.47505 * 33.91460 * 1 2 3 29 29 H 1.08999 * 109.47296 * 153.92119 * 1 2 3 30 30 H 0.96994 * 119.99432 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.47318 * 149.99890 * 11 2 1 32 32 H 1.09005 * 109.47357 * 29.99609 * 11 2 1 33 33 H 1.08994 * 109.47115 * 304.99463 * 12 11 2 34 34 H 1.09009 * 109.47001 * 185.00116 * 12 11 2 35 35 H 1.09001 * 109.47034 * 60.00135 * 14 13 12 36 36 H 1.08997 * 109.47420 * 300.00156 * 14 13 12 37 37 H 1.09004 * 109.47560 * 304.99852 * 15 14 13 38 38 H 1.09001 * 109.46824 * 185.00307 * 15 14 13 39 39 H 0.96993 * 120.00160 * 359.97438 * 16 15 14 40 40 H 1.07991 * 125.59000 * 0.03938 * 20 19 17 41 41 H 1.09003 * 115.55207 * 154.30776 * 23 22 21 42 42 H 1.09009 * 117.49415 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.50099 * 145.02254 * 24 23 22 44 44 H 1.08995 * 117.49827 * 252.51170 * 25 24 23 45 45 H 1.08999 * 117.51874 * 107.47490 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1668 1.2222 -0.3611 5 6 1.5363 2.3415 0.4641 6 7 0.3917 2.2653 1.1095 7 14 2.3354 4.0046 0.1727 8 1 2.4785 4.2361 -1.2872 9 1 1.4866 5.0715 0.7616 10 1 3.6757 4.0286 0.8115 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7109 1.4417 13 8 1.2061 -1.9944 2.0805 14 6 1.3325 -2.4190 3.4391 15 6 -0.0565 -2.6923 4.0194 16 7 -0.6660 -3.8231 3.3152 17 6 -1.8985 -4.2462 3.6595 18 8 -2.5045 -3.6895 4.5552 19 6 -2.5088 -5.3867 2.9555 20 6 -3.7377 -5.8665 3.2520 21 16 -4.0794 -7.1843 2.2181 22 6 -2.5628 -7.0194 1.4509 23 6 -2.0700 -7.8936 0.3266 24 6 -3.0670 -8.8733 -0.2956 25 6 -1.9422 -9.3933 0.6018 26 7 -1.9019 -6.0410 1.9620 27 1 -0.3633 0.0702 1.0253 28 1 -0.3634 0.8528 -0.5734 29 1 -0.3634 -0.9230 -0.4518 30 1 -0.0370 3.0728 1.4335 31 1 3.1499 -1.1381 -0.5143 32 1 1.6084 -2.0281 -0.5147 33 1 2.9642 -0.9139 1.9811 34 1 3.0733 -2.6070 1.4426 35 1 1.8212 -1.6369 4.0202 36 1 1.9299 -3.3297 3.4811 37 1 -0.6820 -1.8080 3.8968 38 1 0.0329 -2.9299 5.0794 39 1 -0.1827 -4.2673 2.6011 40 1 -4.3955 -5.4803 4.0163 41 1 -1.3321 -7.4385 -0.3341 42 1 -4.0795 -8.8851 0.1081 43 1 -2.9853 -9.0627 -1.3659 44 1 -1.1205 -9.9247 0.1218 45 1 -2.2141 -9.7474 1.5961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725441351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = 14.637392 kcal Electronic energy + Delta-G solvation = -26599.840287 eV Core-core repulsion = 22746.318097 eV Total energy + Delta-G solvation = -3853.522190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62861 -38.95345 -37.64105 -37.32698 -35.39087 -34.36815 -31.43992 -30.84347 -29.58771 -27.85311 -26.22572 -25.65057 -24.11311 -22.95298 -22.93550 -21.97040 -21.08909 -20.29277 -19.96281 -18.68043 -16.89420 -16.74084 -16.56967 -16.07446 -15.98900 -15.43089 -15.15956 -14.92014 -14.56795 -14.25265 -14.15291 -13.81051 -13.57489 -13.31057 -13.06990 -12.70616 -12.50706 -12.31211 -12.09617 -11.97704 -11.50050 -11.35690 -11.30364 -11.05620 -10.85874 -10.80085 -10.71752 -10.48424 -10.19840 -10.05703 -9.99972 -9.88450 -9.85722 -9.74964 -9.15851 -8.95816 -8.86799 -8.43880 -6.62095 -5.60740 -3.07162 0.25308 0.90706 1.32201 1.76807 3.15474 3.29840 3.41558 3.43022 3.48562 3.49480 3.58847 4.21617 4.27145 4.42341 4.48736 4.57922 4.78216 4.96691 5.07781 5.11196 5.21090 5.33931 5.36123 5.49997 5.52408 5.55513 5.62108 5.66498 5.71616 5.78214 6.05572 6.14965 6.25673 6.29188 6.49967 6.59691 6.82510 7.01859 7.15543 7.56594 7.63672 7.84514 7.87454 8.03567 8.22729 8.50923 9.35271 9.99211 10.50087 11.43257 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.002366 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.533176 B =11833.674187 C =12452.170765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.257 4.257 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.902 5.902 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.153 3.847 12 C 0.043 3.957 13 O -0.366 6.366 14 C 0.051 3.949 15 C 0.123 3.877 16 N -0.698 5.698 17 C 0.591 3.409 18 O -0.540 6.540 19 C 0.019 3.981 20 C -0.229 4.229 21 S 0.204 5.796 22 C 0.059 3.941 23 C -0.086 4.086 24 C -0.169 4.169 25 C -0.160 4.160 26 N -0.438 5.438 27 H 0.032 0.968 28 H 0.037 0.963 29 H -0.007 1.007 30 H 0.251 0.749 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.413 0.587 40 H 0.190 0.810 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 -26.165 1.760 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.318 5.318 3 C -0.387 4.387 4 H 0.083 0.917 5 C -0.197 4.197 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.285 6.285 14 C -0.027 4.027 15 C 0.000 4.000 16 N -0.349 5.349 17 C 0.374 3.626 18 O -0.417 6.417 19 C -0.116 4.116 20 C -0.371 4.371 21 S 0.462 5.538 22 C -0.220 4.220 23 C -0.107 4.107 24 C -0.207 4.207 25 C -0.198 4.198 26 N -0.153 5.153 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.011 0.989 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.249 0.751 40 H 0.208 0.792 41 H 0.155 0.845 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.569 -26.055 2.059 27.210 hybrid contribution 1.368 1.702 0.367 2.214 sum -6.201 -24.353 2.427 25.247 Atomic orbital electron populations 1.20681 0.82169 0.94761 0.99321 1.43869 1.02121 1.00207 1.85652 1.19154 0.98139 0.85688 1.35734 0.91654 1.25040 0.97789 0.98366 0.98467 1.70093 1.18032 1.26941 1.39651 0.86378 0.78426 0.84127 0.77803 1.21170 1.21699 1.21099 1.20887 0.96361 0.88898 0.91382 1.23507 0.85069 0.96848 0.98229 1.88027 1.30435 1.87248 1.22743 1.22596 0.95403 0.98482 0.86206 1.21479 0.93740 0.89429 0.95371 1.45728 1.16796 1.33761 1.38614 1.17022 0.81456 0.81726 0.82384 1.90817 1.62581 1.57299 1.31028 1.20439 0.93335 1.00374 0.97481 1.26620 1.01303 1.02291 1.06858 1.82686 1.18168 1.27102 1.25860 1.26185 0.95361 0.98514 1.01986 1.20435 1.03885 0.89811 0.96588 1.23165 0.95155 1.01880 1.00493 1.23158 1.01335 0.93760 1.01595 1.66817 1.33700 1.06185 1.08568 0.94993 0.94469 0.98894 0.93850 0.92413 0.93840 0.93332 0.95730 0.91936 0.93756 0.89824 0.90307 0.75118 0.79235 0.84514 0.88332 0.87033 0.87303 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.68 8.61 59.85 0.52 5.19 16 2 N -0.60 -15.66 2.89 -181.12 -0.52 -16.19 16 3 C -0.26 -7.26 9.67 -15.06 -0.15 -7.40 16 4 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 5 C 0.00 0.05 5.12 -17.43 -0.09 -0.03 16 6 N -0.90 -27.29 10.62 55.49 0.59 -26.70 16 7 Si 0.90 22.36 29.57 -169.99 -5.03 17.34 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.15 3.24 6.11 -4.05 -0.02 3.22 16 12 C 0.04 0.83 6.28 37.16 0.23 1.06 16 13 O -0.37 -7.22 9.84 -35.23 -0.35 -7.57 16 14 C 0.05 0.79 6.07 37.16 0.23 1.02 16 15 C 0.12 1.90 6.06 -4.04 -0.02 1.88 16 16 N -0.70 -10.74 5.50 -61.43 -0.34 -11.08 16 17 C 0.59 9.59 7.80 -12.59 -0.10 9.49 16 18 O -0.54 -10.07 16.71 5.25 0.09 -9.98 16 19 C 0.02 0.26 6.70 -84.53 -0.57 -0.31 16 20 C -0.23 -2.57 10.62 29.65 0.31 -2.26 16 21 S 0.20 1.65 21.65 -107.50 -2.33 -0.68 16 22 C 0.06 0.59 6.99 -13.61 -0.10 0.50 16 23 C -0.09 -0.63 6.33 -91.77 -0.58 -1.21 16 24 C -0.17 -0.83 10.01 -26.73 -0.27 -1.10 16 25 C -0.16 -0.82 10.23 -26.73 -0.27 -1.10 16 26 N -0.44 -5.69 10.12 -8.51 -0.09 -5.78 16 27 H 0.03 0.93 7.43 -51.93 -0.39 0.54 16 28 H 0.04 1.05 7.20 -51.93 -0.37 0.68 16 29 H -0.01 -0.18 7.85 -51.93 -0.41 -0.59 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 32 H 0.04 0.87 7.87 -51.93 -0.41 0.46 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.41 6.08 7.99 -40.82 -0.33 5.75 16 40 H 0.19 1.92 8.03 -52.49 -0.42 1.50 16 41 H 0.14 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.10 0.44 7.21 -51.92 -0.37 0.06 16 43 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 394.01 15.07 5.94 5.94 Total: -1.00 -34.67 394.01 -9.80 -44.47 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.89 Total: 1.28 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.88 Total: 8.95 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.36 Total: -59.75 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.26 Total: -17.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.33 Total: -0.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.67 -9.80 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725441351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.111 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds