Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99839 * 2 1 4 4 H 1.07994 * 120.00124 * 202.71008 * 3 2 1 5 5 C 1.38818 * 120.00059 * 22.70960 * 3 2 1 6 6 N 1.31624 * 119.99857 * 11.50694 * 5 3 2 7 7 Si 1.86799 * 119.99788 * 191.50601 * 5 3 2 8 8 H 1.48500 * 109.47404 * 60.00396 * 7 5 3 9 9 H 1.48506 * 109.46818 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47321 * 299.99919 * 7 5 3 11 11 C 1.46490 * 120.00197 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47065 * 270.00075 * 11 2 1 13 13 O 1.42897 * 109.47157 * 65.00019 * 12 11 2 14 14 C 1.42908 * 113.99792 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46840 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47064 * 65.00558 * 15 14 13 17 17 C 1.34774 * 119.99811 * 179.97438 * 16 15 14 18 18 O 1.21636 * 120.00282 * 359.97438 * 17 16 15 19 19 C 1.47273 * 119.99977 * 180.26909 * 17 16 15 20 20 C 1.35203 * 123.13990 * 179.74770 * 19 17 16 21 21 S 1.70946 * 108.82297 * 180.02562 * 20 19 17 22 22 C 1.70764 * 91.12971 * 0.02562 * 21 20 19 23 23 C 1.50702 * 124.72013 * 180.02562 * 22 21 20 24 24 C 1.52998 * 117.50095 * 8.59373 * 23 22 21 25 25 C 1.53001 * 60.00308 * 252.51313 * 24 23 22 26 26 N 1.28652 * 110.56012 * 359.72583 * 22 21 20 27 27 H 1.09004 * 109.47031 * 273.91739 * 1 2 3 28 28 H 1.09001 * 109.47505 * 33.91460 * 1 2 3 29 29 H 1.08999 * 109.47296 * 153.92119 * 1 2 3 30 30 H 0.96994 * 119.99432 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.47318 * 149.99890 * 11 2 1 32 32 H 1.09005 * 109.47357 * 29.99609 * 11 2 1 33 33 H 1.08994 * 109.47115 * 304.99463 * 12 11 2 34 34 H 1.09009 * 109.47001 * 185.00116 * 12 11 2 35 35 H 1.09001 * 109.47034 * 60.00135 * 14 13 12 36 36 H 1.08997 * 109.47420 * 300.00156 * 14 13 12 37 37 H 1.09004 * 109.47560 * 304.99852 * 15 14 13 38 38 H 1.09001 * 109.46824 * 185.00307 * 15 14 13 39 39 H 0.96993 * 120.00160 * 359.97438 * 16 15 14 40 40 H 1.07991 * 125.59000 * 0.03938 * 20 19 17 41 41 H 1.09003 * 115.55207 * 154.30776 * 23 22 21 42 42 H 1.09009 * 117.49415 * 0.02562 * 24 23 22 43 43 H 1.09000 * 117.50099 * 145.02254 * 24 23 22 44 44 H 1.08995 * 117.49827 * 252.51170 * 25 24 23 45 45 H 1.08999 * 117.51874 * 107.47490 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1668 1.2222 -0.3611 5 6 1.5363 2.3415 0.4641 6 7 0.3917 2.2653 1.1095 7 14 2.3354 4.0046 0.1727 8 1 2.4785 4.2361 -1.2872 9 1 1.4866 5.0715 0.7616 10 1 3.6757 4.0286 0.8115 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7109 1.4417 13 8 1.2061 -1.9944 2.0805 14 6 1.3325 -2.4190 3.4391 15 6 -0.0565 -2.6923 4.0194 16 7 -0.6660 -3.8231 3.3152 17 6 -1.8985 -4.2462 3.6595 18 8 -2.5045 -3.6895 4.5552 19 6 -2.5088 -5.3867 2.9555 20 6 -3.7377 -5.8665 3.2520 21 16 -4.0794 -7.1843 2.2181 22 6 -2.5628 -7.0194 1.4509 23 6 -2.0700 -7.8936 0.3266 24 6 -3.0670 -8.8733 -0.2956 25 6 -1.9422 -9.3933 0.6018 26 7 -1.9019 -6.0410 1.9620 27 1 -0.3633 0.0702 1.0253 28 1 -0.3634 0.8528 -0.5734 29 1 -0.3634 -0.9230 -0.4518 30 1 -0.0370 3.0728 1.4335 31 1 3.1499 -1.1381 -0.5143 32 1 1.6084 -2.0281 -0.5147 33 1 2.9642 -0.9139 1.9811 34 1 3.0733 -2.6070 1.4426 35 1 1.8212 -1.6369 4.0202 36 1 1.9299 -3.3297 3.4811 37 1 -0.6820 -1.8080 3.8968 38 1 0.0329 -2.9299 5.0794 39 1 -0.1827 -4.2673 2.6011 40 1 -4.3955 -5.4803 4.0163 41 1 -1.3321 -7.4385 -0.3341 42 1 -4.0795 -8.8851 0.1081 43 1 -2.9853 -9.0627 -1.3659 44 1 -1.1205 -9.9247 0.1218 45 1 -2.2141 -9.7474 1.5961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725441351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = -9.385891 kcal Electronic energy + Delta-G solvation = -26600.882014 eV Core-core repulsion = 22746.318097 eV Total energy + Delta-G solvation = -3854.563917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62060 -40.01631 -39.04193 -37.96585 -37.23825 -35.79989 -33.42659 -31.78392 -30.99151 -29.50952 -27.83986 -27.07230 -25.10818 -24.78526 -23.31442 -23.13546 -22.15886 -21.89195 -20.98166 -19.58874 -18.78787 -17.89648 -17.57621 -17.38897 -17.09272 -16.81218 -16.55602 -16.24423 -15.68649 -15.51587 -15.25006 -15.16147 -15.05680 -14.82530 -14.52101 -14.07646 -13.82166 -13.29332 -13.16490 -13.08663 -13.02253 -12.68738 -12.55764 -12.52849 -12.38460 -12.36681 -12.05434 -11.89029 -11.80817 -11.70671 -11.52246 -11.34862 -10.89554 -10.61658 -10.60809 -10.41084 -10.29139 -9.77914 -8.74631 -7.78309 -5.27098 -0.58438 0.16909 0.51598 0.80051 1.45684 1.48899 1.55321 2.08224 2.21304 2.52365 2.71972 2.85055 2.98830 3.34522 3.61917 3.75064 3.81899 3.91315 4.03426 4.07261 4.11830 4.14457 4.39573 4.41571 4.49285 4.56164 4.58712 4.66637 4.70323 4.77166 4.83612 4.91105 4.97822 5.02349 5.10145 5.18361 5.22217 5.27155 5.34435 5.65110 5.79595 6.21247 6.34570 6.44544 6.54157 7.01545 7.17707 7.90869 8.37632 9.24936 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.002366 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.533176 B =11833.674187 C =12452.170765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.197 3.803 2 N -0.613 5.613 3 C -0.263 4.263 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.277 1.277 9 H -0.298 1.298 10 H -0.273 1.273 11 C 0.145 3.855 12 C 0.052 3.948 13 O -0.395 6.395 14 C 0.054 3.946 15 C 0.128 3.872 16 N -0.695 5.695 17 C 0.585 3.415 18 O -0.575 6.575 19 C -0.011 4.011 20 C -0.243 4.243 21 S 0.296 5.704 22 C 0.046 3.954 23 C -0.113 4.113 24 C -0.154 4.154 25 C -0.150 4.150 26 N -0.469 5.469 27 H -0.002 1.002 28 H 0.010 0.990 29 H 0.014 0.986 30 H 0.244 0.756 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.416 0.584 40 H 0.195 0.805 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -28.825 0.686 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.336 5.336 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.253 4.253 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.203 1.203 9 H -0.225 1.225 10 H -0.199 1.199 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.315 6.315 14 C -0.023 4.023 15 C 0.004 3.996 16 N -0.345 5.345 17 C 0.370 3.630 18 O -0.456 6.456 19 C -0.146 4.146 20 C -0.386 4.386 21 S 0.555 5.445 22 C -0.233 4.233 23 C -0.135 4.135 24 C -0.192 4.192 25 C -0.188 4.188 26 N -0.184 5.184 27 H 0.016 0.984 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.253 0.747 40 H 0.212 0.788 41 H 0.148 0.852 42 H 0.124 0.876 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.858 -28.770 0.956 29.591 hybrid contribution 1.111 2.341 0.645 2.670 sum -5.747 -26.429 1.601 27.094 Atomic orbital electron populations 1.20291 0.83110 0.94492 0.96912 1.44087 1.01939 1.01675 1.85882 1.19564 0.98465 0.86627 1.34635 0.90633 1.25864 0.98547 1.02037 0.98818 1.70297 1.19705 1.27235 1.41264 0.85300 0.77620 0.79414 0.77832 1.20348 1.22497 1.19895 1.21132 0.96795 0.87039 0.93104 1.23265 0.85261 0.97951 0.96247 1.87983 1.31069 1.87675 1.24758 1.22705 0.95610 0.99755 0.84223 1.21402 0.93235 0.88327 0.96595 1.45712 1.16819 1.33401 1.38552 1.17458 0.81324 0.82142 0.82057 1.90776 1.63378 1.58752 1.32703 1.20184 0.94547 1.00886 0.99005 1.26923 1.00656 1.03476 1.07524 1.82287 1.15421 1.23863 1.22903 1.26740 0.96404 0.97913 1.02214 1.20552 1.05643 0.90679 0.96591 1.23312 0.95053 0.99399 1.01473 1.23282 1.01902 0.91603 1.02043 1.66791 1.34951 1.07565 1.09094 0.98366 0.97151 0.96733 0.94658 0.90679 0.92499 0.95737 0.91334 0.92029 0.90385 0.93380 0.88386 0.74678 0.78809 0.85168 0.87616 0.85470 0.85940 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.80 8.61 127.77 1.10 11.90 16 2 N -0.61 -32.25 2.89 -726.94 -2.10 -34.34 16 3 C -0.26 -14.80 9.67 84.03 0.81 -13.98 16 4 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 5 C -0.06 -3.37 5.12 84.86 0.43 -2.93 16 6 N -0.94 -58.57 10.62 21.65 0.23 -58.34 16 7 Si 0.97 46.44 29.57 68.60 2.03 48.46 16 8 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 9 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 C 0.15 5.96 6.11 86.38 0.53 6.49 16 12 C 0.05 1.91 6.28 71.98 0.45 2.36 16 13 O -0.40 -15.53 9.84 -148.98 -1.47 -16.99 16 14 C 0.05 1.65 6.07 71.98 0.44 2.09 16 15 C 0.13 4.09 6.06 86.38 0.52 4.61 16 16 N -0.69 -21.99 5.50 -466.51 -2.57 -24.56 16 17 C 0.59 19.82 7.80 86.62 0.68 20.50 16 18 O -0.58 -22.60 16.71 -4.15 -0.07 -22.67 16 19 C -0.01 -0.32 6.70 40.56 0.27 -0.05 16 20 C -0.24 -5.40 10.62 67.12 0.71 -4.68 16 21 S 0.30 4.18 21.65 -56.49 -1.22 2.95 16 22 C 0.05 0.87 6.99 88.57 0.62 1.49 16 23 C -0.11 -1.47 6.33 -11.54 -0.07 -1.55 16 24 C -0.15 -1.05 10.01 30.59 0.31 -0.74 16 25 C -0.15 -1.13 10.23 30.60 0.31 -0.82 16 26 N -0.47 -12.16 10.12 -180.83 -1.83 -13.99 16 27 H 0.00 -0.12 7.43 -2.39 -0.02 -0.14 16 28 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 29 H 0.01 0.70 7.85 -2.39 -0.02 0.68 16 30 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.08 2.79 8.03 -2.39 -0.02 2.77 16 32 H 0.06 2.17 7.87 -2.38 -0.02 2.15 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.42 12.41 7.99 -92.71 -0.74 11.67 16 40 H 0.19 3.96 8.03 -2.92 -0.02 3.93 16 41 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.11 0.56 7.21 -2.38 -0.02 0.54 16 43 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -77.70 394.01 0.38 -77.32 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.26 Total: 17.48 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 7.11 Total: 24.68 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -6.26 Total: -131.24 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.54 Total: -39.66 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.22 Total: 2.95 kcal Total: -77.70 0.38 -77.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725441351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.934 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds