Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00067 * 2 1 4 4 C 1.52994 * 109.47286 * 269.99975 * 3 2 1 5 5 H 1.09000 * 109.47065 * 59.99694 * 4 3 2 6 6 O 1.42899 * 109.47111 * 299.99580 * 4 3 2 7 7 C 1.53008 * 109.47541 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47030 * 185.00022 * 7 4 3 9 9 C 1.36945 * 119.99750 * 179.72445 * 8 7 4 10 10 H 1.08002 * 119.99831 * 0.27326 * 9 8 7 11 11 C 1.38803 * 120.00131 * 180.27092 * 9 8 7 12 12 N 1.31618 * 120.00060 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00169 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47066 * 60.00211 * 13 11 9 15 15 H 1.48500 * 109.47373 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46977 * 300.00228 * 13 11 9 17 17 C 1.34782 * 120.00232 * 179.97438 * 2 1 3 18 18 O 1.21686 * 119.99883 * 182.80609 * 17 2 1 19 19 C 1.46680 * 119.99670 * 2.80318 * 17 2 1 20 20 C 1.35659 * 126.12736 * 187.60620 * 19 17 2 21 21 N 1.30953 * 114.19299 * 179.79243 * 20 19 17 22 22 C 1.29427 * 117.35797 * 0.52439 * 21 20 19 23 23 C 1.50700 * 124.80342 * 179.73354 * 22 21 20 24 24 C 1.52998 * 109.47262 * 89.97544 * 23 22 21 25 25 C 1.53001 * 117.49667 * 243.62297 * 24 23 22 26 26 C 1.53001 * 60.00038 * 252.50927 * 25 24 23 27 27 S 1.70955 * 110.39569 * 359.70998 * 22 21 20 28 28 H 1.09000 * 109.46769 * 94.16399 * 1 2 3 29 29 H 1.09005 * 109.47213 * 214.15432 * 1 2 3 30 30 H 1.08993 * 109.47466 * 334.16040 * 1 2 3 31 31 H 1.09000 * 109.47318 * 149.99824 * 3 2 1 32 32 H 1.09004 * 109.47231 * 29.99924 * 3 2 1 33 33 H 0.96700 * 114.00334 * 300.00249 * 6 4 3 34 34 H 1.08996 * 109.46721 * 64.99814 * 7 4 3 35 35 H 1.08998 * 109.46543 * 304.99887 * 7 4 3 36 36 H 0.97003 * 120.00418 * 359.97438 * 8 7 4 37 37 H 0.97003 * 120.00020 * 179.97438 * 12 11 9 38 38 H 1.08002 * 122.90783 * 359.96517 * 20 19 17 39 39 H 1.09000 * 109.47244 * 209.97633 * 23 22 21 40 40 H 1.09003 * 109.46752 * 329.97292 * 23 22 21 41 41 H 1.08995 * 115.54989 * 29.33010 * 24 23 22 42 42 H 1.09002 * 117.50133 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.49548 * 145.02370 * 25 24 23 44 44 H 1.09000 * 117.50480 * 252.50860 * 26 25 24 45 45 H 1.09002 * 117.51961 * 107.47778 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9563 6 8 3.2249 0.7145 -2.1160 7 6 3.2170 3.0358 -1.4425 8 7 3.3569 3.5187 -2.8184 9 6 4.0058 4.6987 -3.0673 10 1 4.4183 5.2710 -2.2495 11 6 4.1334 5.1592 -4.3705 12 7 3.6303 4.4620 -5.3670 13 14 5.0180 6.7691 -4.7098 14 1 6.4180 6.6768 -4.2233 15 1 5.0177 7.0358 -6.1707 16 1 4.3209 7.8750 -4.0051 17 6 2.1390 -1.1672 0.0005 18 8 3.3547 -1.1678 0.0521 19 6 1.4069 -2.4368 -0.0610 20 6 1.9415 -3.6759 0.0771 21 7 1.0706 -4.6495 -0.0149 22 6 -0.1635 -4.3250 -0.2315 23 6 -1.2989 -5.3060 -0.3718 24 6 -1.9151 -5.5729 1.0029 25 6 -1.8204 -6.9966 1.5552 26 6 -3.1629 -6.4566 1.0583 27 16 -0.3235 -2.6262 -0.3354 28 1 -0.3633 -0.0746 -1.0250 29 1 -0.3634 -0.8505 0.5770 30 1 -0.3634 0.9248 0.4479 31 1 3.1499 1.1384 0.5139 32 1 1.6084 2.0284 0.5138 33 1 4.0874 0.5460 -1.7125 34 1 4.2052 2.8851 -1.0080 35 1 2.6692 3.7711 -0.8532 36 1 2.9867 3.0046 -3.5530 37 1 3.7192 4.7840 -6.2777 38 1 2.9940 -3.8448 0.2507 39 1 -2.0574 -4.8914 -1.0357 40 1 -0.9224 -6.2401 -0.7888 41 1 -1.8486 -4.7508 1.7155 42 1 -1.3194 -7.7432 0.9390 43 1 -1.6914 -7.1113 2.6315 44 1 -3.9172 -6.2161 1.8075 45 1 -3.5450 -6.8475 0.1152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725705650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = 4.231558 kcal Electronic energy + Delta-G solvation = -26379.426059 eV Core-core repulsion = 22525.452638 eV Total energy + Delta-G solvation = -3853.973420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44479 -39.61105 -37.90691 -37.22706 -35.43855 -33.98909 -32.29324 -31.31225 -29.95073 -28.69349 -27.20959 -25.70777 -24.50643 -22.97420 -22.81957 -21.49436 -21.24865 -20.95879 -19.07661 -18.68470 -17.14839 -16.91842 -16.68352 -16.26427 -16.00623 -15.44284 -15.28415 -15.09794 -14.68498 -14.41903 -14.12483 -13.86116 -13.77816 -13.55409 -13.31516 -13.25616 -12.98125 -12.74008 -12.42907 -12.16944 -12.04107 -11.96529 -11.74548 -11.53973 -10.93258 -10.89917 -10.79140 -10.70335 -10.48043 -10.24151 -10.17638 -9.80032 -9.77038 -9.67184 -9.58682 -9.17720 -8.87743 -8.58231 -6.90711 -5.73270 -3.02872 0.01621 0.92075 1.34027 2.26569 2.74020 3.07954 3.29325 3.45317 3.49374 3.50882 3.68218 4.24803 4.31544 4.41833 4.48191 4.57837 4.65429 4.67913 4.84896 4.94648 4.96916 5.08123 5.13549 5.17672 5.18168 5.22599 5.25970 5.34432 5.45546 5.53681 5.63284 5.66034 5.69654 5.71942 5.86217 5.98663 6.19909 6.34204 6.52438 6.73788 7.09603 7.41143 7.69702 7.96634 8.18745 8.44928 9.56079 10.13979 10.49516 11.49045 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.001960 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.122152 B =14280.971957 C =14442.734012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.603 5.603 3 C 0.087 3.913 4 C 0.085 3.915 5 H 0.096 0.904 6 O -0.548 6.548 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.601 3.399 18 O -0.520 6.520 19 C -0.291 4.291 20 C 0.120 3.880 21 N -0.477 5.477 22 C 0.034 3.966 23 C -0.016 4.016 24 C -0.151 4.151 25 C -0.173 4.173 26 C -0.176 4.176 27 S 0.193 5.807 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.375 0.625 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.388 0.612 37 H 0.256 0.744 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.199 -20.926 16.239 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.335 5.335 3 C -0.036 4.036 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.388 3.612 18 O -0.397 6.397 19 C -0.415 4.415 20 C -0.038 4.038 21 N -0.191 5.191 22 C -0.240 4.240 23 C -0.057 4.057 24 C -0.171 4.171 25 C -0.210 4.210 26 C -0.213 4.213 27 S 0.451 5.549 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.222 0.778 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.203 0.797 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.742 -20.686 15.747 30.922 hybrid contribution 1.679 0.695 0.045 1.818 sum -15.063 -19.991 15.791 29.595 Atomic orbital electron populations 1.22082 0.80052 1.03166 1.02970 1.47469 1.06542 1.06052 1.73425 1.22365 0.98417 0.83742 0.99110 1.22506 0.95850 0.88430 0.90758 0.88579 1.86551 1.33116 1.58867 1.56782 1.21229 0.96813 0.92360 0.89812 1.42235 1.68318 1.25044 1.01378 1.19178 1.28466 0.97621 0.92201 0.91301 1.24762 1.01504 0.99029 0.95625 1.69673 1.50289 1.39209 0.98672 0.86253 0.79522 0.83407 0.76884 1.21253 1.21664 1.21290 1.16638 0.86519 0.81630 0.76403 1.90811 1.12462 1.86476 1.50000 1.25772 0.96880 0.99563 1.19241 1.22156 1.00903 0.85205 0.95509 1.66278 1.00559 1.35992 1.16276 1.27782 0.96122 0.99543 1.00569 1.19887 0.91918 0.97405 0.96471 1.22171 1.02028 0.95345 0.97527 1.23054 1.00229 0.96161 1.01534 1.23019 0.91190 1.03666 1.03416 1.84341 1.04703 1.01529 1.64291 0.91230 0.90961 0.88872 0.89030 0.89214 0.77779 0.96044 0.95756 0.77748 0.93450 0.79666 0.88957 0.88550 0.87646 0.88394 0.88742 0.88517 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.97 59.85 0.54 1.06 16 2 N -0.60 -7.28 2.83 -183.13 -0.52 -7.79 16 3 C 0.09 1.10 5.20 -4.05 -0.02 1.08 16 4 C 0.09 1.41 3.27 -26.73 -0.09 1.33 16 5 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 6 O -0.55 -10.41 12.16 -40.06 -0.49 -10.90 16 7 C 0.13 2.52 5.90 -4.04 -0.02 2.50 16 8 N -0.73 -18.90 5.55 -59.91 -0.33 -19.24 16 9 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 C 0.60 8.46 7.11 -12.85 -0.09 8.37 16 18 O -0.52 -8.78 15.42 0.37 0.01 -8.78 16 19 C -0.29 -3.50 6.22 -37.10 -0.23 -3.73 16 20 C 0.12 1.45 11.10 -18.85 -0.21 1.24 16 21 N -0.48 -5.51 10.51 -11.50 -0.12 -5.63 16 22 C 0.03 0.31 6.59 -13.29 -0.09 0.22 16 23 C -0.02 -0.11 6.07 -27.88 -0.17 -0.27 16 24 C -0.15 -0.89 5.72 -90.62 -0.52 -1.41 16 25 C -0.17 -0.97 10.18 -26.73 -0.27 -1.24 16 26 C -0.18 -0.80 10.25 -26.73 -0.27 -1.08 16 27 S 0.19 1.65 18.14 -107.50 -1.95 -0.30 16 28 H 0.07 0.59 7.78 -51.93 -0.40 0.18 16 29 H 0.07 0.53 4.69 -24.46 -0.11 0.41 16 30 H 0.09 0.58 7.84 -51.93 -0.41 0.18 16 31 H 0.09 1.23 7.38 -51.93 -0.38 0.84 16 32 H 0.09 0.90 7.86 -51.93 -0.41 0.50 16 33 H 0.37 6.69 8.54 45.56 0.39 7.08 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.39 10.93 7.67 -40.82 -0.31 10.61 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.19 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.62 7.88 -51.93 -0.41 0.21 16 41 H 0.11 0.65 8.07 -51.93 -0.42 0.23 16 42 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -35.43 387.55 -9.37 -44.80 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.81 Total: 11.99 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.69 Total: 0.47 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.25 Total: -60.85 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.48 Total: -19.68 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.95 Total: -0.30 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.43 -9.37 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725705650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.035 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds