Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00067 * 2 1 4 4 C 1.52994 * 109.47286 * 269.99975 * 3 2 1 5 5 H 1.09000 * 109.47065 * 59.99694 * 4 3 2 6 6 O 1.42899 * 109.47111 * 299.99580 * 4 3 2 7 7 C 1.53008 * 109.47541 * 179.97438 * 4 3 2 8 8 N 1.46494 * 109.47030 * 185.00022 * 7 4 3 9 9 C 1.36945 * 119.99750 * 179.72445 * 8 7 4 10 10 H 1.08002 * 119.99831 * 0.27326 * 9 8 7 11 11 C 1.38803 * 120.00131 * 180.27092 * 9 8 7 12 12 N 1.31618 * 120.00060 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00169 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47066 * 60.00211 * 13 11 9 15 15 H 1.48500 * 109.47373 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46977 * 300.00228 * 13 11 9 17 17 C 1.34782 * 120.00232 * 179.97438 * 2 1 3 18 18 O 1.21686 * 119.99883 * 182.80609 * 17 2 1 19 19 C 1.46680 * 119.99670 * 2.80318 * 17 2 1 20 20 C 1.35659 * 126.12736 * 187.60620 * 19 17 2 21 21 N 1.30953 * 114.19299 * 179.79243 * 20 19 17 22 22 C 1.29427 * 117.35797 * 0.52439 * 21 20 19 23 23 C 1.50700 * 124.80342 * 179.73354 * 22 21 20 24 24 C 1.52998 * 109.47262 * 89.97544 * 23 22 21 25 25 C 1.53001 * 117.49667 * 243.62297 * 24 23 22 26 26 C 1.53001 * 60.00038 * 252.50927 * 25 24 23 27 27 S 1.70955 * 110.39569 * 359.70998 * 22 21 20 28 28 H 1.09000 * 109.46769 * 94.16399 * 1 2 3 29 29 H 1.09005 * 109.47213 * 214.15432 * 1 2 3 30 30 H 1.08993 * 109.47466 * 334.16040 * 1 2 3 31 31 H 1.09000 * 109.47318 * 149.99824 * 3 2 1 32 32 H 1.09004 * 109.47231 * 29.99924 * 3 2 1 33 33 H 0.96700 * 114.00334 * 300.00249 * 6 4 3 34 34 H 1.08996 * 109.46721 * 64.99814 * 7 4 3 35 35 H 1.08998 * 109.46543 * 304.99887 * 7 4 3 36 36 H 0.97003 * 120.00418 * 359.97438 * 8 7 4 37 37 H 0.97003 * 120.00020 * 179.97438 * 12 11 9 38 38 H 1.08002 * 122.90783 * 359.96517 * 20 19 17 39 39 H 1.09000 * 109.47244 * 209.97633 * 23 22 21 40 40 H 1.09003 * 109.46752 * 329.97292 * 23 22 21 41 41 H 1.08995 * 115.54989 * 29.33010 * 24 23 22 42 42 H 1.09002 * 117.50133 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.49548 * 145.02370 * 25 24 23 44 44 H 1.09000 * 117.50480 * 252.50860 * 26 25 24 45 45 H 1.09002 * 117.51961 * 107.47778 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9563 6 8 3.2249 0.7145 -2.1160 7 6 3.2170 3.0358 -1.4425 8 7 3.3569 3.5187 -2.8184 9 6 4.0058 4.6987 -3.0673 10 1 4.4183 5.2710 -2.2495 11 6 4.1334 5.1592 -4.3705 12 7 3.6303 4.4620 -5.3670 13 14 5.0180 6.7691 -4.7098 14 1 6.4180 6.6768 -4.2233 15 1 5.0177 7.0358 -6.1707 16 1 4.3209 7.8750 -4.0051 17 6 2.1390 -1.1672 0.0005 18 8 3.3547 -1.1678 0.0521 19 6 1.4069 -2.4368 -0.0610 20 6 1.9415 -3.6759 0.0771 21 7 1.0706 -4.6495 -0.0149 22 6 -0.1635 -4.3250 -0.2315 23 6 -1.2989 -5.3060 -0.3718 24 6 -1.9151 -5.5729 1.0029 25 6 -1.8204 -6.9966 1.5552 26 6 -3.1629 -6.4566 1.0583 27 16 -0.3235 -2.6262 -0.3354 28 1 -0.3633 -0.0746 -1.0250 29 1 -0.3634 -0.8505 0.5770 30 1 -0.3634 0.9248 0.4479 31 1 3.1499 1.1384 0.5139 32 1 1.6084 2.0284 0.5138 33 1 4.0874 0.5460 -1.7125 34 1 4.2052 2.8851 -1.0080 35 1 2.6692 3.7711 -0.8532 36 1 2.9867 3.0046 -3.5530 37 1 3.7192 4.7840 -6.2777 38 1 2.9940 -3.8448 0.2507 39 1 -2.0574 -4.8914 -1.0357 40 1 -0.9224 -6.2401 -0.7888 41 1 -1.8486 -4.7508 1.7155 42 1 -1.3194 -7.7432 0.9390 43 1 -1.6914 -7.1113 2.6315 44 1 -3.9172 -6.2161 1.8075 45 1 -3.5450 -6.8475 0.1152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725705650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -21.706318 kcal Electronic energy + Delta-G solvation = -26380.550810 eV Core-core repulsion = 22525.452638 eV Total energy + Delta-G solvation = -3855.098171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38794 -40.51173 -38.69920 -38.28292 -36.56232 -35.88945 -33.28935 -32.94935 -31.20449 -29.65770 -28.23394 -27.03260 -25.54186 -24.55578 -23.19312 -22.87838 -22.12619 -21.70580 -19.89168 -19.56007 -19.23609 -17.96101 -17.67488 -17.31830 -16.84000 -16.58793 -16.37436 -16.17553 -15.95735 -15.68940 -15.32337 -14.96816 -14.64126 -14.62814 -14.40178 -14.18515 -14.12122 -13.82753 -13.71138 -13.46644 -12.98082 -12.76428 -12.66499 -12.53424 -12.53101 -12.31755 -12.21776 -12.07383 -11.82689 -11.40042 -11.27699 -11.05153 -10.96399 -10.88324 -10.57992 -10.41525 -10.03565 -9.57240 -9.01714 -7.94943 -5.24975 -0.80837 0.14750 0.55922 1.37381 1.46352 1.50318 1.56401 1.80637 2.11078 2.55536 2.87357 3.02587 3.35160 3.41415 3.54527 3.74664 3.81727 3.89162 3.98990 4.03091 4.05893 4.16887 4.20182 4.24089 4.37843 4.49773 4.50754 4.53288 4.66017 4.70818 4.72596 4.75011 4.85435 4.92326 5.02825 5.08800 5.22883 5.27944 5.31071 5.31545 5.47055 6.14039 6.25595 6.61336 6.76967 6.95717 7.32033 8.08367 8.30887 9.28279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.001960 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.122152 B =14280.971957 C =14442.734012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.601 5.601 3 C 0.097 3.903 4 C 0.094 3.906 5 H 0.093 0.907 6 O -0.569 6.569 7 C 0.124 3.876 8 N -0.741 5.741 9 C -0.249 4.249 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.273 1.273 17 C 0.593 3.407 18 O -0.561 6.561 19 C -0.323 4.323 20 C 0.113 3.887 21 N -0.503 5.503 22 C 0.031 3.969 23 C -0.017 4.017 24 C -0.159 4.159 25 C -0.185 4.185 26 C -0.160 4.160 27 S 0.261 5.739 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.376 0.624 34 H 0.022 0.978 35 H 0.045 0.955 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.179 0.821 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.388 -20.460 17.454 32.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.332 5.332 3 C -0.026 4.026 4 C 0.034 3.966 5 H 0.111 0.889 6 O -0.374 6.374 7 C -0.003 4.003 8 N -0.384 5.384 9 C -0.381 4.381 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.222 1.222 16 H -0.199 1.199 17 C 0.381 3.619 18 O -0.442 6.442 19 C -0.447 4.447 20 C -0.046 4.046 21 N -0.218 5.218 22 C -0.242 4.242 23 C -0.057 4.057 24 C -0.179 4.179 25 C -0.222 4.222 26 C -0.197 4.197 27 S 0.521 5.479 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.224 0.776 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.196 0.804 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.978 -20.213 17.020 32.533 hybrid contribution 2.274 0.476 -0.271 2.339 sum -16.704 -19.736 16.749 30.807 Atomic orbital electron populations 1.22385 0.77683 1.05310 1.03703 1.47540 1.08048 1.05140 1.72458 1.22202 0.99235 0.84948 0.96259 1.22464 0.94604 0.86418 0.93140 0.88906 1.86522 1.33531 1.59481 1.57912 1.21439 0.97535 0.94424 0.86913 1.42458 1.68088 1.24460 1.03392 1.19644 1.27573 0.98297 0.92548 0.90367 1.25650 1.03070 1.02766 0.95585 1.69848 1.52315 1.41157 0.98760 0.85154 0.78489 0.79473 0.76267 1.20533 1.22227 1.19908 1.16998 0.86311 0.82713 0.75841 1.90775 1.14248 1.87214 1.51937 1.25710 0.99481 0.98623 1.20897 1.22173 1.01074 0.85714 0.95636 1.66327 1.01476 1.36154 1.17818 1.28378 0.96108 1.01001 0.98665 1.20061 0.91418 0.96900 0.97349 1.22148 1.03266 0.95382 0.97093 1.23115 1.01474 0.96077 1.01571 1.23100 0.90646 1.01999 1.03981 1.83949 1.01089 1.00125 1.62764 0.90957 0.89843 0.85872 0.89824 0.85569 0.77586 0.96055 0.93719 0.79478 0.94041 0.80418 0.86656 0.88589 0.87943 0.88611 0.88829 0.87619 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 8.97 127.77 1.15 1.88 16 2 N -0.60 -13.60 2.83 -851.52 -2.41 -16.01 16 3 C 0.10 2.29 5.20 86.38 0.45 2.74 16 4 C 0.09 3.04 3.27 30.59 0.10 3.14 16 5 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 6 O -0.57 -21.95 12.16 -144.36 -1.75 -23.70 16 7 C 0.12 4.83 5.90 86.38 0.51 5.34 16 8 N -0.74 -38.72 5.55 -343.46 -1.91 -40.63 16 9 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 10 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 11 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 12 N -0.97 -61.26 13.06 21.65 0.28 -60.98 16 13 Si 0.98 46.81 29.55 68.60 2.03 48.83 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 17 C 0.59 16.70 7.11 86.45 0.61 17.31 16 18 O -0.56 -19.63 15.42 0.32 0.00 -19.63 16 19 C -0.32 -7.73 6.22 23.88 0.15 -7.58 16 20 C 0.11 2.81 11.10 84.23 0.93 3.74 16 21 N -0.50 -11.59 10.51 -190.29 -2.00 -13.59 16 22 C 0.03 0.54 6.59 88.46 0.58 1.12 16 23 C -0.02 -0.19 6.07 29.85 0.18 0.00 16 24 C -0.16 -1.58 5.72 -10.79 -0.06 -1.64 16 25 C -0.19 -1.85 10.18 30.59 0.31 -1.54 16 26 C -0.16 -1.09 10.25 30.60 0.31 -0.78 16 27 S 0.26 3.96 18.14 -56.49 -1.02 2.94 16 28 H 0.07 1.01 7.78 -2.39 -0.02 0.99 16 29 H 0.08 0.97 4.69 -19.85 -0.09 0.87 16 30 H 0.12 1.02 7.84 -2.39 -0.02 1.00 16 31 H 0.08 2.16 7.38 -2.39 -0.02 2.15 16 32 H 0.13 2.08 7.86 -2.38 -0.02 2.06 16 33 H 0.38 13.93 8.54 -74.06 -0.63 13.29 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.37 21.40 7.67 -92.71 -0.71 20.69 16 37 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.18 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 1.09 7.88 -2.39 -0.02 1.07 16 41 H 0.10 1.08 8.07 -2.39 -0.02 1.06 16 42 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -77.94 387.55 -0.64 -78.58 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.40 Total: 37.93 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.54 Total: 6.25 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -6.03 Total: -131.21 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.75 Total: -43.33 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.02 Total: 2.94 kcal Total: -77.94 -0.64 -78.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725705650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.872 kcal (2) G-P(sol) polarization free energy of solvation -77.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds