Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21296 * 119.99665 * 2 1 4 4 N 1.34776 * 119.99930 * 180.02562 * 2 1 3 5 5 C 1.40060 * 119.99693 * 185.27296 * 4 2 1 6 6 C 1.39042 * 119.96239 * 33.37582 * 5 4 2 7 7 C 1.38119 * 120.26627 * 180.02562 * 6 5 4 8 8 C 1.38326 * 120.19639 * 359.97242 * 7 6 5 9 9 F 1.35105 * 120.03807 * 179.97438 * 8 7 6 10 10 C 1.39813 * 119.92643 * 0.02562 * 8 7 6 11 11 C 1.47701 * 120.13634 * 179.97438 * 10 8 7 12 12 O 1.21568 * 120.00027 * 359.97438 * 11 10 8 13 13 N 1.34782 * 119.99992 * 179.97438 * 11 10 8 14 14 C 1.46503 * 119.99619 * 180.27685 * 13 11 10 15 15 C 1.53001 * 109.46628 * 179.72438 * 14 13 11 16 16 H 1.08996 * 109.47193 * 304.99418 * 15 14 13 17 17 O 1.42897 * 109.47199 * 64.99710 * 15 14 13 18 18 C 1.52998 * 109.46944 * 184.99670 * 15 14 13 19 19 N 1.46497 * 109.47246 * 180.02562 * 18 15 14 20 20 C 1.36940 * 120.00312 * 180.02562 * 19 18 15 21 21 H 1.08002 * 119.99597 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00076 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99644 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00158 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47026 * 90.00421 * 24 22 20 26 26 H 1.48502 * 109.47331 * 210.00628 * 24 22 20 27 27 H 1.48504 * 109.47304 * 330.00517 * 24 22 20 28 28 C 1.38485 * 119.95993 * 213.62085 * 5 4 2 29 29 H 1.08996 * 109.47251 * 239.99699 * 1 2 3 30 30 H 1.09005 * 109.47539 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47178 * 119.99796 * 1 2 3 32 32 H 0.96998 * 120.00322 * 5.27272 * 4 2 1 33 33 H 1.08000 * 119.86625 * 0.02562 * 6 5 4 34 34 H 1.08000 * 119.89829 * 179.97438 * 7 6 5 35 35 H 0.96997 * 120.00090 * 359.97438 * 13 11 10 36 36 H 1.09003 * 109.46808 * 299.72125 * 14 13 11 37 37 H 1.08991 * 109.47426 * 59.72434 * 14 13 11 38 38 H 0.96707 * 114.00108 * 60.00568 * 17 15 14 39 39 H 1.09003 * 109.47613 * 300.00081 * 18 15 14 40 40 H 1.09000 * 109.47288 * 60.00076 * 18 15 14 41 41 H 0.97004 * 120.00318 * 359.97438 * 19 18 15 42 42 H 0.97003 * 119.99706 * 179.97438 * 23 22 20 43 43 H 1.07994 * 120.10365 * 0.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5770 -1.1698 0.1110 6 6 4.2146 -0.1969 0.8728 7 6 5.5911 -0.1932 0.9865 8 6 6.3449 -1.1583 0.3434 9 9 7.6912 -1.1514 0.4565 10 6 5.7123 -2.1404 -0.4247 11 6 6.5127 -3.1728 -1.1139 12 8 7.7243 -3.1695 -1.0143 13 7 5.8999 -4.1185 -1.8532 14 6 6.6936 -5.1461 -2.5318 15 6 5.7609 -6.0925 -3.2904 16 1 5.0191 -6.4996 -2.6032 17 8 5.0999 -5.3745 -4.3342 18 6 6.5772 -7.2362 -3.8957 19 7 5.6843 -8.1421 -4.6225 20 6 6.1935 -9.2468 -5.2515 21 1 7.2535 -9.4499 -5.2120 22 6 5.3475 -10.1048 -5.9406 23 7 5.8371 -11.1663 -6.5455 24 14 3.5143 -9.7530 -6.0094 25 1 3.2165 -8.9085 -7.1940 26 1 2.7681 -11.0327 -6.1136 27 1 3.1007 -9.0380 -4.7753 28 6 4.3211 -2.1382 -0.5419 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6989 -2.0054 -0.0781 33 1 3.6311 0.5589 1.3775 34 1 6.0802 0.5655 1.5795 35 1 4.9332 -4.1214 -1.9324 36 1 7.3788 -4.6711 -3.2340 37 1 7.2632 -5.7113 -1.7943 38 1 5.7001 -4.9840 -4.9841 39 1 7.3190 -6.8292 -4.5829 40 1 7.0814 -7.7839 -3.0995 41 1 4.7322 -7.9598 -4.6577 42 1 5.2458 -11.7661 -7.0267 43 1 3.8266 -2.8914 -1.1372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732666346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -153.231994 kcal Electronic energy + Delta-G solvation = -28316.141052 eV Core-core repulsion = 23889.126324 eV Total energy + Delta-G solvation = -4427.014729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.95735 -41.74036 -40.92069 -39.32777 -38.81988 -36.21612 -35.77987 -35.45541 -33.49972 -32.81207 -31.67799 -30.73657 -29.27074 -27.42500 -25.39973 -24.14854 -23.55192 -22.85997 -22.35916 -21.21819 -19.85466 -19.50296 -18.57158 -18.45063 -17.83871 -17.42229 -17.28602 -17.05292 -16.74987 -16.52279 -16.43462 -15.94201 -15.78236 -15.58245 -15.42654 -15.02761 -14.94268 -14.51810 -14.47352 -14.26308 -14.13167 -13.99375 -13.67801 -13.37024 -13.29674 -13.19278 -12.98909 -12.80020 -12.64904 -12.22351 -11.88313 -11.82565 -11.50467 -11.37520 -11.07255 -11.01223 -10.88002 -10.43551 -10.15728 -9.31480 -9.22945 -8.02860 -5.37121 -0.48814 -0.08604 1.39363 1.40324 1.44640 1.51906 1.74329 1.85830 2.02550 2.49832 2.54174 3.08117 3.26895 3.30073 3.42945 3.50140 3.57081 3.78930 3.94092 3.97956 4.03758 4.09117 4.19942 4.26603 4.53641 4.57258 4.58855 4.69689 4.70520 4.80821 4.93279 4.95690 4.98445 5.11728 5.15784 5.23897 5.24347 5.68270 5.74287 6.20366 6.36022 6.36500 6.74029 7.04192 7.07000 7.08307 7.82955 8.03192 9.18471 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012580 B = 0.002352 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.245959 B =11902.305749 C =13947.988343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.508 3.492 3 O -0.573 6.573 4 N -0.661 5.661 5 C 0.131 3.869 6 C -0.070 4.070 7 C -0.138 4.138 8 C 0.117 3.883 9 F -0.136 7.136 10 C -0.163 4.163 11 C 0.555 3.445 12 O -0.570 6.570 13 N -0.699 5.699 14 C 0.099 3.901 15 C 0.108 3.892 16 H 0.116 0.884 17 O -0.562 6.562 18 C 0.123 3.877 19 N -0.751 5.751 20 C -0.239 4.239 21 H 0.055 0.945 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.963 3.037 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.248 1.248 28 C -0.071 4.071 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.434 0.566 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.416 0.584 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.388 0.612 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.371 0.629 42 H 0.258 0.742 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 25.919 18.581 34.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.452 6.452 4 N -0.308 5.308 5 C 0.036 3.964 6 C -0.090 4.090 7 C -0.157 4.157 8 C 0.096 3.904 9 F -0.114 7.114 10 C -0.167 4.167 11 C 0.343 3.657 12 O -0.450 6.450 13 N -0.352 5.352 14 C -0.026 4.026 15 C 0.048 3.952 16 H 0.134 0.866 17 O -0.369 6.369 18 C -0.005 4.005 19 N -0.398 5.398 20 C -0.370 4.370 21 H 0.073 0.927 22 C -0.258 4.258 23 N -0.635 5.635 24 Si 0.790 3.210 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.173 1.173 28 C -0.092 4.092 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.274 0.726 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.238 0.762 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.204 0.796 42 H 0.067 0.933 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.382 26.327 18.911 35.069 hybrid contribution -0.131 -0.611 -0.757 0.982 sum -13.513 25.716 18.154 34.256 Atomic orbital electron populations 1.21972 0.86858 1.06617 1.07017 1.21875 0.92615 0.82247 0.73351 1.90755 1.71785 1.32922 1.49723 1.43618 1.03564 1.11255 1.72399 1.17658 0.84688 0.96964 0.97093 1.21306 0.93538 0.98250 0.95908 1.21202 0.93942 0.98986 1.01565 1.18024 0.77264 0.96438 0.98649 1.91548 1.29777 1.95906 1.94164 1.19745 0.94643 0.98327 1.04020 1.18258 0.86988 0.81571 0.78932 1.90841 1.15424 1.75204 1.63566 1.45588 1.11565 1.28436 1.49604 1.21938 0.94182 0.89500 0.96987 1.22134 0.94706 0.89417 0.88935 0.86609 1.86504 1.38418 1.72067 1.39891 1.21390 0.93081 0.90956 0.95038 1.42505 1.06389 1.27143 1.63721 1.19031 0.93582 1.00032 1.24310 0.92745 1.25580 1.03178 0.96973 1.00047 1.69901 1.36302 1.16750 1.40535 0.85296 0.79953 0.76786 0.78995 1.20554 1.22379 1.17267 1.21103 0.90397 0.99982 0.97690 0.86368 0.88998 0.86676 0.72556 0.83222 0.81921 0.74533 0.90811 0.90311 0.76235 0.94862 0.94430 0.79552 0.93293 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.11 10.32 71.23 0.74 0.62 16 2 C 0.51 4.78 7.67 87.66 0.67 5.45 16 3 O -0.57 -11.04 14.77 -3.08 -0.05 -11.08 16 4 N -0.66 -4.10 5.34 -303.56 -1.62 -5.72 16 5 C 0.13 1.59 6.27 38.08 0.24 1.83 16 6 C -0.07 -1.03 8.65 22.43 0.19 -0.84 16 7 C -0.14 -2.27 10.01 22.26 0.22 -2.04 16 8 C 0.12 2.59 7.28 22.67 0.17 2.76 16 9 F -0.14 -3.82 15.54 44.97 0.70 -3.12 16 10 C -0.16 -3.26 5.88 -20.07 -0.12 -3.38 16 11 C 0.55 13.75 7.77 86.74 0.67 14.42 16 12 O -0.57 -19.38 15.33 -3.93 -0.06 -19.44 16 13 N -0.70 -13.32 5.45 -466.10 -2.54 -15.86 16 14 C 0.10 2.15 5.31 86.38 0.46 2.61 16 15 C 0.11 2.57 3.09 30.59 0.09 2.66 16 16 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 17 O -0.56 -13.20 13.03 -148.98 -1.94 -15.14 16 18 C 0.12 4.15 5.92 86.38 0.51 4.66 16 19 N -0.75 -33.38 5.30 -343.46 -1.82 -35.20 16 20 C -0.24 -13.41 10.47 84.03 0.88 -12.53 16 21 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 22 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 23 N -0.98 -62.78 13.97 21.65 0.30 -62.48 16 24 Si 0.96 44.58 27.74 68.60 1.90 46.49 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 27 H -0.25 -10.19 6.52 99.48 0.65 -9.54 16 28 C -0.07 -0.87 9.45 22.66 0.21 -0.66 16 29 H 0.12 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.09 0.24 8.12 -2.38 -0.02 0.23 16 31 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.43 -0.56 8.82 -92.71 -0.82 -1.38 16 33 H 0.15 2.22 6.41 -2.91 -0.02 2.20 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.42 5.47 6.50 -92.71 -0.60 4.87 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.39 7.55 9.05 -74.05 -0.67 6.88 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.37 15.76 5.40 -92.71 -0.50 15.26 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.17 0.98 6.40 -2.91 -0.02 0.97 16 Total: -1.00 -86.04 372.91 -1.25 -87.29 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -1.54 Total: 22.09 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.41 Total: 12.16 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -5.68 Total: -119.26 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -2.05 Total: -45.66 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.70 Total: -3.12 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.49 kcal Total: -86.04 -1.25 -87.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732666346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.937 kcal (2) G-P(sol) polarization free energy of solvation -86.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds