Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47025 * 2 1 4 4 C 1.46501 * 119.99773 * 262.45891 * 3 2 1 5 5 C 1.53004 * 109.47305 * 270.00227 * 4 3 2 6 6 N 1.46900 * 109.47276 * 180.02562 * 5 4 3 7 7 C 1.46906 * 110.99854 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46900 * 179.97438 * 7 6 5 9 9 O 1.21295 * 119.99758 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99815 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99688 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00493 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00071 * 179.97438 * 11 10 8 14 14 N 1.31417 * 119.99711 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00443 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46998 * 60.00006 * 15 13 11 17 17 H 1.48493 * 109.47167 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46805 * 300.00555 * 15 13 11 19 19 C 1.34773 * 120.00439 * 82.46074 * 3 2 1 20 20 O 1.21700 * 120.00342 * 182.27556 * 19 3 2 21 21 C 1.46581 * 119.99734 * 2.27423 * 19 3 2 22 22 C 1.36645 * 125.45858 * 172.25266 * 21 19 3 23 23 C 1.37471 * 113.30054 * 180.26275 * 22 21 19 24 24 C 1.33814 * 115.09892 * 0.02562 * 23 22 21 25 25 C 1.50706 * 124.52265 * 179.97438 * 24 23 22 26 26 S 1.70615 * 110.95545 * 359.97438 * 24 23 22 27 27 H 1.09000 * 109.47277 * 60.00287 * 1 2 3 28 28 H 1.08994 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46995 * 300.00334 * 1 2 3 30 30 H 1.08998 * 109.47225 * 240.00144 * 2 1 3 31 31 H 1.09000 * 109.47277 * 119.99713 * 2 1 3 32 32 H 1.08998 * 109.47059 * 30.00162 * 4 3 2 33 33 H 1.09000 * 109.47379 * 149.99963 * 4 3 2 34 34 H 1.09011 * 109.46869 * 299.99724 * 5 4 3 35 35 H 1.08991 * 109.47374 * 59.99610 * 5 4 3 36 36 H 1.00900 * 110.99632 * 56.04509 * 6 5 4 37 37 H 1.08997 * 109.47098 * 299.99875 * 7 6 5 38 38 H 1.08999 * 109.46857 * 60.00316 * 7 6 5 39 39 H 0.96991 * 120.00165 * 359.97438 * 10 8 7 40 40 H 0.96995 * 119.99821 * 179.97438 * 14 13 11 41 41 H 1.08002 * 123.35296 * 0.29128 * 22 21 19 42 42 H 1.08004 * 122.45423 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.47108 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47224 * 300.01322 * 25 24 23 45 45 H 1.09002 * 109.46751 * 60.01791 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4194 2.0163 -1.2578 5 6 3.9073 1.7607 -1.5064 6 7 4.3097 2.3980 -2.7673 7 6 5.7358 2.1735 -3.0390 8 6 6.1107 2.8398 -4.3377 9 8 5.2724 3.4428 -4.9740 10 7 7.3774 2.7657 -4.7920 11 6 7.7185 3.3723 -5.9732 12 1 6.9723 3.9100 -6.5394 13 6 9.0246 3.2964 -6.4414 14 7 9.9327 2.6426 -5.7522 15 14 9.4893 4.1223 -8.0512 16 1 9.2278 5.5808 -7.9528 17 1 10.9307 3.8949 -8.3261 18 1 8.6785 3.5474 -9.1546 19 6 2.0985 2.0677 1.1570 20 8 2.4648 3.2283 1.1519 21 6 1.7447 1.4164 2.4216 22 6 1.9250 1.9509 3.6662 23 6 1.5092 1.1207 4.6800 24 6 1.0059 -0.0535 4.2817 25 6 0.4892 -1.1208 5.2118 26 16 1.0273 -0.1810 2.5805 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8368 1.5975 -2.0782 33 1 2.2405 3.0897 -1.1961 34 1 4.4900 2.1796 -0.6859 35 1 4.0862 0.6874 -1.5681 36 1 4.0942 3.3837 -2.7591 37 1 6.3308 2.5951 -2.2289 38 1 5.9277 1.1030 -3.1117 39 1 8.0478 2.2838 -4.2830 40 1 10.8443 2.5893 -6.0792 41 1 2.3515 2.9284 3.8365 42 1 1.5832 1.3961 5.7217 43 1 0.1383 -1.9721 4.6286 44 1 1.2905 -1.4419 5.8772 45 1 -0.3349 -0.7202 5.8022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732759090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -32.049182 kcal Electronic energy + Delta-G solvation = -26074.455058 eV Core-core repulsion = 22218.908387 eV Total energy + Delta-G solvation = -3855.546671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31432 -38.33755 -38.14312 -36.53545 -35.38434 -33.83318 -32.53252 -31.48982 -31.15457 -29.38878 -27.59168 -25.88118 -24.25026 -24.03331 -23.49669 -22.37328 -20.73535 -19.22097 -18.87370 -18.30697 -17.84819 -16.70399 -16.32446 -16.10037 -15.66533 -15.46848 -15.22581 -14.71592 -14.51714 -14.37231 -14.15516 -13.83076 -13.79999 -13.46984 -13.41919 -13.29162 -12.95419 -12.68546 -12.64311 -12.42762 -12.26537 -12.04987 -11.98630 -11.69815 -11.50471 -11.47509 -11.10784 -10.95803 -10.81832 -10.42230 -10.23224 -10.18728 -9.47562 -9.17490 -8.88915 -8.69042 -8.43422 -8.06218 -7.93540 -6.39140 -3.79973 0.19070 1.14620 1.57245 2.07594 2.58540 2.95574 3.22322 3.27656 3.32355 3.93686 4.12154 4.17629 4.37044 4.41549 4.46788 4.66472 4.74848 4.90494 4.97545 4.99951 5.03106 5.16891 5.19365 5.22861 5.28368 5.30818 5.32278 5.44581 5.50218 5.64741 5.74292 5.76926 5.83191 5.88781 5.90464 6.01043 6.06018 6.20359 6.30946 7.03147 7.19128 7.57497 7.65329 7.86999 8.08615 8.63934 9.20217 9.56855 10.08433 10.78581 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028167 B = 0.001760 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.841729 B =15906.556439 C =16130.056022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 N -0.607 5.607 4 C 0.119 3.881 5 C 0.045 3.955 6 N -0.666 5.666 7 C 0.052 3.948 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.589 3.411 20 O -0.525 6.525 21 C -0.279 4.279 22 C -0.046 4.046 23 C -0.161 4.161 24 C -0.231 4.231 25 C -0.085 4.085 26 S 0.239 5.761 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.329 -11.784 22.617 32.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.034 4.034 3 N -0.340 5.340 4 C -0.003 4.003 5 C -0.086 4.086 6 N -0.299 5.299 7 C -0.081 4.081 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.377 3.623 20 O -0.403 6.403 21 C -0.399 4.399 22 C -0.080 4.080 23 C -0.191 4.191 24 C -0.349 4.349 25 C -0.143 4.143 26 S 0.508 5.492 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.168 0.832 42 H 0.156 0.844 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.146 -12.439 20.758 31.488 hybrid contribution 1.714 1.643 1.400 2.756 sum -18.432 -10.796 22.158 30.778 Atomic orbital electron populations 1.22456 0.94955 1.03392 1.03305 1.21932 0.95344 0.82759 1.03395 1.47783 1.64914 1.13943 1.07328 1.21462 0.95219 0.99754 0.83883 1.22271 0.95188 1.00082 0.91032 1.60032 1.17611 1.20186 1.32073 1.21657 0.88423 1.01336 0.96634 1.19790 0.83531 0.86044 0.87961 1.90521 1.49471 1.46936 1.59774 1.41849 1.08264 1.48150 1.21763 1.19665 0.95087 1.29952 0.98232 0.87946 1.25268 0.95462 0.97552 0.99688 1.69609 1.03440 1.42012 1.39313 0.85905 0.77188 0.79600 0.81442 1.19915 1.21000 1.19889 1.17040 0.77408 0.85624 0.82179 1.90852 1.47215 1.15975 1.86250 1.24530 1.16538 1.01046 0.97793 1.20730 0.96767 1.00531 0.89935 1.19887 1.04357 0.94012 1.00850 1.25068 1.05470 1.00668 1.03708 1.20361 1.01309 0.95153 0.97468 1.83751 1.56379 1.12960 0.96075 0.91154 0.90455 0.91545 0.88029 0.90259 0.88996 0.89371 0.95065 0.91065 0.82931 0.93795 0.89620 0.77453 0.91842 0.83151 0.84422 0.91427 0.90479 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 8.93 37.16 0.33 -0.73 16 2 C 0.09 0.65 5.67 -4.04 -0.02 0.62 16 3 N -0.61 -6.40 2.49 -175.27 -0.44 -6.83 16 4 C 0.12 1.40 5.65 -4.04 -0.02 1.37 16 5 C 0.05 0.60 6.01 -3.82 -0.02 0.58 16 6 N -0.67 -11.19 6.13 -115.05 -0.70 -11.90 16 7 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 8 C 0.44 10.70 7.82 -10.99 -0.09 10.62 16 9 O -0.58 -16.15 15.78 5.54 0.09 -16.06 16 10 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 11 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 12 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 13 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 14 N -0.90 -24.88 13.05 55.50 0.72 -24.15 16 15 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 19 C 0.59 7.53 7.57 -12.90 -0.10 7.43 16 20 O -0.53 -8.66 16.42 5.19 0.09 -8.58 16 21 C -0.28 -2.91 6.11 -36.79 -0.22 -3.14 16 22 C -0.05 -0.46 10.02 -40.44 -0.41 -0.86 16 23 C -0.16 -1.28 10.00 -41.41 -0.41 -1.70 16 24 C -0.23 -1.62 6.28 -35.86 -0.23 -1.85 16 25 C -0.08 -0.37 10.33 36.01 0.37 0.00 16 26 S 0.24 1.65 15.29 -107.50 -1.64 0.01 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.44 6.03 -45.27 -0.27 0.17 16 30 H 0.10 0.60 8.02 -51.93 -0.42 0.19 16 31 H 0.08 0.52 4.42 -21.86 -0.10 0.42 16 32 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.09 1.17 7.39 -51.93 -0.38 0.79 16 34 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.35 6.20 8.43 -39.29 -0.33 5.87 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.07 0.23 8.11 -51.93 -0.42 -0.19 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -34.36 386.14 -8.64 -43.00 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.40 Total: 11.92 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.09 Total: 5.13 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.48 Total: -57.55 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.17 Total: -24.64 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.64 Total: 0.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.36 -8.64 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732759090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.951 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds