Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47025 * 2 1 4 4 C 1.46501 * 119.99773 * 262.45891 * 3 2 1 5 5 C 1.53004 * 109.47305 * 270.00227 * 4 3 2 6 6 N 1.46900 * 109.47276 * 180.02562 * 5 4 3 7 7 C 1.46906 * 110.99854 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46900 * 179.97438 * 7 6 5 9 9 O 1.21295 * 119.99758 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99815 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99688 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00493 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00071 * 179.97438 * 11 10 8 14 14 N 1.31417 * 119.99711 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00443 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46998 * 60.00006 * 15 13 11 17 17 H 1.48493 * 109.47167 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46805 * 300.00555 * 15 13 11 19 19 C 1.34773 * 120.00439 * 82.46074 * 3 2 1 20 20 O 1.21700 * 120.00342 * 182.27556 * 19 3 2 21 21 C 1.46581 * 119.99734 * 2.27423 * 19 3 2 22 22 C 1.36645 * 125.45858 * 172.25266 * 21 19 3 23 23 C 1.37471 * 113.30054 * 180.26275 * 22 21 19 24 24 C 1.33814 * 115.09892 * 0.02562 * 23 22 21 25 25 C 1.50706 * 124.52265 * 179.97438 * 24 23 22 26 26 S 1.70615 * 110.95545 * 359.97438 * 24 23 22 27 27 H 1.09000 * 109.47277 * 60.00287 * 1 2 3 28 28 H 1.08994 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46995 * 300.00334 * 1 2 3 30 30 H 1.08998 * 109.47225 * 240.00144 * 2 1 3 31 31 H 1.09000 * 109.47277 * 119.99713 * 2 1 3 32 32 H 1.08998 * 109.47059 * 30.00162 * 4 3 2 33 33 H 1.09000 * 109.47379 * 149.99963 * 4 3 2 34 34 H 1.09011 * 109.46869 * 299.99724 * 5 4 3 35 35 H 1.08991 * 109.47374 * 59.99610 * 5 4 3 36 36 H 1.00900 * 110.99632 * 56.04509 * 6 5 4 37 37 H 1.08997 * 109.47098 * 299.99875 * 7 6 5 38 38 H 1.08999 * 109.46857 * 60.00316 * 7 6 5 39 39 H 0.96991 * 120.00165 * 359.97438 * 10 8 7 40 40 H 0.96995 * 119.99821 * 179.97438 * 14 13 11 41 41 H 1.08002 * 123.35296 * 0.29128 * 22 21 19 42 42 H 1.08004 * 122.45423 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.47108 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47224 * 300.01322 * 25 24 23 45 45 H 1.09002 * 109.46751 * 60.01791 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4194 2.0163 -1.2578 5 6 3.9073 1.7607 -1.5064 6 7 4.3097 2.3980 -2.7673 7 6 5.7358 2.1735 -3.0390 8 6 6.1107 2.8398 -4.3377 9 8 5.2724 3.4428 -4.9740 10 7 7.3774 2.7657 -4.7920 11 6 7.7185 3.3723 -5.9732 12 1 6.9723 3.9100 -6.5394 13 6 9.0246 3.2964 -6.4414 14 7 9.9327 2.6426 -5.7522 15 14 9.4893 4.1223 -8.0512 16 1 9.2278 5.5808 -7.9528 17 1 10.9307 3.8949 -8.3261 18 1 8.6785 3.5474 -9.1546 19 6 2.0985 2.0677 1.1570 20 8 2.4648 3.2283 1.1519 21 6 1.7447 1.4164 2.4216 22 6 1.9250 1.9509 3.6662 23 6 1.5092 1.1207 4.6800 24 6 1.0059 -0.0535 4.2817 25 6 0.4892 -1.1208 5.2118 26 16 1.0273 -0.1810 2.5805 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8368 1.5975 -2.0782 33 1 2.2405 3.0897 -1.1961 34 1 4.4900 2.1796 -0.6859 35 1 4.0862 0.6874 -1.5681 36 1 4.0942 3.3837 -2.7591 37 1 6.3308 2.5951 -2.2289 38 1 5.9277 1.1030 -3.1117 39 1 8.0478 2.2838 -4.2830 40 1 10.8443 2.5893 -6.0792 41 1 2.3515 2.9284 3.8365 42 1 1.5832 1.3961 5.7217 43 1 0.1383 -1.9721 4.6286 44 1 1.2905 -1.4419 5.8772 45 1 -0.3349 -0.7202 5.8022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732759090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -56.622636 kcal Electronic energy + Delta-G solvation = -26075.520643 eV Core-core repulsion = 22218.908387 eV Total energy + Delta-G solvation = -3856.612256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21615 -40.16868 -38.86773 -37.57152 -36.64145 -35.83677 -33.35100 -33.14127 -32.17765 -30.39091 -28.57382 -27.31279 -25.68582 -24.75388 -24.25175 -23.42498 -21.59506 -21.04661 -19.93038 -19.58801 -19.06663 -17.90531 -17.49974 -17.17544 -16.72721 -16.57541 -16.51511 -16.09033 -15.76715 -15.36833 -15.36135 -15.00651 -14.78614 -14.74128 -14.38926 -13.97281 -13.91582 -13.68145 -13.53832 -13.42217 -13.24989 -13.12833 -12.95899 -12.89460 -12.76799 -12.58103 -12.44064 -12.26363 -12.12504 -12.11116 -11.51313 -11.40633 -11.19260 -10.41576 -10.03379 -10.00960 -9.53942 -9.46587 -9.26072 -8.47434 -5.96666 -0.50281 0.51240 0.97219 1.36632 1.39763 1.41575 1.52849 1.74116 2.02672 2.10879 2.29251 2.94151 3.19268 3.41075 3.54286 3.84516 3.91291 3.94641 4.06316 4.21213 4.27812 4.30474 4.39161 4.42563 4.45451 4.47847 4.55114 4.68043 4.74381 4.75972 4.76515 4.88033 4.91098 5.09809 5.10351 5.23612 5.30580 5.37375 5.40059 5.44788 5.80511 6.03762 6.18750 6.25622 6.58203 6.95534 7.10769 7.53728 8.08821 8.69743 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028167 B = 0.001760 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.841729 B =15906.556439 C =16130.056022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 N -0.602 5.602 4 C 0.125 3.875 5 C 0.054 3.946 6 N -0.673 5.673 7 C 0.066 3.934 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.337 4.337 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.582 3.418 20 O -0.579 6.579 21 C -0.319 4.319 22 C -0.056 4.056 23 C -0.177 4.177 24 C -0.227 4.227 25 C -0.087 4.087 26 S 0.302 5.698 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.017 0.983 35 H 0.092 0.908 36 H 0.343 0.657 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.137 0.863 42 H 0.153 0.847 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.085 -14.503 23.330 34.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.040 4.040 3 N -0.333 5.333 4 C 0.002 3.998 5 C -0.076 4.076 6 N -0.305 5.305 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.196 1.196 19 C 0.372 3.628 20 O -0.461 6.461 21 C -0.439 4.439 22 C -0.091 4.091 23 C -0.206 4.206 24 C -0.346 4.346 25 C -0.145 4.145 26 S 0.572 5.428 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.110 0.890 36 H 0.161 0.839 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.912 -15.224 21.489 33.628 hybrid contribution 1.881 2.403 1.253 3.299 sum -19.030 -12.821 22.742 32.307 Atomic orbital electron populations 1.22457 0.93731 1.05032 1.02674 1.22252 0.96360 0.80742 1.04691 1.47854 1.64118 1.15136 1.06209 1.21316 0.94519 0.98908 0.85054 1.22275 0.95847 1.00629 0.88839 1.60062 1.16506 1.19881 1.34091 1.21532 0.89639 1.01995 0.93505 1.20787 0.82480 0.84979 0.89254 1.90489 1.50391 1.48480 1.61472 1.41914 1.09078 1.48416 1.21479 1.19661 0.95517 1.31716 0.99718 0.90213 1.26077 0.94825 0.97635 1.02761 1.69671 1.03803 1.42119 1.40485 0.84959 0.77467 0.78433 0.77291 1.19778 1.19411 1.19562 1.17466 0.76680 0.85204 0.83409 1.90807 1.49872 1.18296 1.87141 1.24474 1.18961 1.03743 0.96737 1.20836 0.96995 1.00534 0.90710 1.19989 1.05141 0.94291 1.01147 1.25559 1.03694 1.00781 1.04576 1.20512 1.01951 0.94686 0.97385 1.83330 1.54410 1.09514 0.95580 0.91588 0.87586 0.92442 0.86135 0.89512 0.87204 0.91633 0.96462 0.89017 0.83860 0.92280 0.87188 0.76961 0.91244 0.84543 0.82973 0.89943 0.89471 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.93 71.98 0.64 -1.00 16 2 C 0.08 0.99 5.67 86.38 0.49 1.48 16 3 N -0.60 -12.42 2.49 -826.64 -2.06 -14.48 16 4 C 0.13 2.91 5.65 86.38 0.49 3.40 16 5 C 0.05 1.41 6.01 86.30 0.52 1.93 16 6 N -0.67 -22.41 6.13 -517.92 -3.17 -25.58 16 7 C 0.07 2.37 6.17 85.56 0.53 2.90 16 8 C 0.44 21.49 7.82 87.66 0.69 22.18 16 9 O -0.62 -35.34 15.78 -3.08 -0.05 -35.39 16 10 N -0.57 -30.09 5.29 -306.98 -1.62 -31.71 16 11 C -0.34 -19.49 9.68 84.04 0.81 -18.68 16 12 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 14 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 15 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 C 0.58 15.44 7.57 86.42 0.65 16.09 16 20 O -0.58 -20.57 16.42 -4.35 -0.07 -20.64 16 21 C -0.32 -6.70 6.11 24.07 0.15 -6.56 16 22 C -0.06 -1.15 10.02 21.72 0.22 -0.94 16 23 C -0.18 -2.65 10.00 21.08 0.21 -2.44 16 24 C -0.23 -2.67 6.28 24.68 0.15 -2.52 16 25 C -0.09 -0.47 10.33 71.24 0.74 0.26 16 26 S 0.30 3.50 15.29 -56.49 -0.86 2.64 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.64 6.03 -6.62 -0.04 0.60 16 30 H 0.12 1.03 8.02 -2.39 -0.02 1.01 16 31 H 0.09 0.91 4.42 -21.50 -0.10 0.81 16 32 H 0.11 2.15 8.07 -2.39 -0.02 2.13 16 33 H 0.07 1.84 7.39 -2.39 -0.02 1.82 16 34 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.34 12.42 8.43 -89.69 -0.76 11.66 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 40 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.08 0.23 8.11 -2.39 -0.02 0.21 16 44 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -76.90 386.14 0.65 -76.25 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.57 Total: 37.56 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.75 Total: 15.87 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -6.57 Total: -121.79 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.12 Total: -56.03 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -0.86 Total: 2.64 kcal Total: -76.90 0.65 -76.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732759090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.628 kcal (2) G-P(sol) polarization free energy of solvation -76.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds