Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34783 * 119.99832 * 2 1 4 4 O 1.21275 * 119.99494 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.99936 * 0.02562 * 3 2 1 6 6 S 1.80997 * 109.46919 * 179.97438 * 5 3 2 7 7 C 1.76205 * 100.00225 * 179.97438 * 6 5 3 8 8 H 1.07999 * 119.99802 * 0.02562 * 7 6 5 9 9 C 1.38799 * 120.00108 * 179.97438 * 7 6 5 10 10 N 1.31631 * 119.99839 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99743 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47303 * 90.00738 * 11 9 7 13 13 H 1.48501 * 109.46935 * 210.00171 * 11 9 7 14 14 H 1.48498 * 109.47151 * 330.00133 * 11 9 7 15 15 C 1.46502 * 120.00067 * 180.02562 * 2 1 3 16 16 H 1.08999 * 109.46981 * 175.81977 * 15 2 1 17 17 C 1.52996 * 109.47178 * 55.81267 * 15 2 1 18 18 N 1.46904 * 109.47009 * 55.00359 * 17 15 2 19 19 C 1.46901 * 111.00078 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.47007 * 180.02562 * 19 18 17 21 21 C 1.41377 * 126.80322 * 94.71506 * 20 19 18 22 22 C 1.35450 * 103.98246 * 179.88939 * 21 20 19 23 23 O 1.34037 * 106.44656 * 0.36255 * 22 21 20 24 24 N 1.20921 * 111.56892 * 359.75505 * 23 22 21 25 25 C 1.53003 * 109.46607 * 295.81904 * 15 2 1 26 26 C 1.53002 * 117.49530 * 253.24113 * 25 15 2 27 27 C 1.52998 * 117.49520 * 184.58207 * 25 15 2 28 28 H 1.08991 * 109.46665 * 275.41491 * 1 2 3 29 29 H 1.09002 * 109.46910 * 35.41496 * 1 2 3 30 30 H 1.08998 * 109.46722 * 155.40978 * 1 2 3 31 31 H 1.08996 * 109.47316 * 299.99456 * 5 3 2 32 32 H 1.08998 * 109.47343 * 60.00037 * 5 3 2 33 33 H 0.97002 * 119.99793 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47382 * 295.00557 * 17 15 2 35 35 H 1.09004 * 109.47022 * 175.00056 * 17 15 2 36 36 H 1.00893 * 110.99878 * 303.95481 * 18 17 15 37 37 H 1.08999 * 109.47187 * 300.00291 * 19 18 17 38 38 H 1.09000 * 109.47301 * 60.00299 * 19 18 17 39 39 H 1.08003 * 128.00767 * 0.02562 * 21 20 19 40 40 H 1.08008 * 126.77218 * 180.09666 * 22 21 20 41 41 H 1.08998 * 115.55147 * 38.91334 * 25 15 2 42 42 H 1.09003 * 117.49869 * 0.02562 * 26 25 15 43 43 H 1.09005 * 117.49569 * 145.02333 * 26 25 15 44 44 H 1.09005 * 117.49984 * 214.97250 * 27 25 15 45 45 H 1.09000 * 117.50181 * 0.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0010 8 1 0.3763 5.0305 0.0011 9 6 1.9283 6.5081 0.0019 10 7 3.2267 6.7246 0.0024 11 14 0.7408 7.9500 0.0025 12 1 0.4258 8.3314 1.4027 13 1 1.3623 9.1033 -0.6967 14 1 -0.5097 7.5618 -0.6981 15 6 2.1976 -1.2687 -0.0006 16 1 3.2669 -1.0709 -0.0754 17 6 1.7507 -2.1151 -1.1942 18 7 1.9171 -1.3422 -2.4323 19 6 1.4975 -2.1252 -3.6022 20 6 1.6829 -1.3016 -4.8506 21 6 2.8040 -1.3097 -5.7119 22 6 2.4845 -0.4108 -6.6734 23 8 1.2724 0.0671 -6.3585 24 7 0.8447 -0.4378 -5.3464 25 6 1.9084 -2.0250 1.2977 26 6 3.0217 -2.0806 2.3458 27 6 2.6673 -3.3317 1.5380 28 1 -0.3632 0.0970 1.0230 29 1 -0.3633 0.8375 -0.5955 30 1 -0.3633 -0.9345 -0.4276 31 1 0.7585 2.5303 -0.8891 32 1 0.7591 2.5298 0.8908 33 1 3.5668 7.6330 0.0034 34 1 0.7021 -2.3876 -1.0741 35 1 2.3574 -3.0192 -1.2459 36 1 1.4156 -0.4681 -2.3830 37 1 2.1027 -3.0292 -3.6705 38 1 0.4473 -2.3981 -3.4991 39 1 3.7053 -1.8983 -5.6247 40 1 3.0892 -0.1308 -7.5234 41 1 0.8811 -1.9662 1.6572 42 1 3.9599 -1.5780 2.1106 43 1 2.7267 -2.0587 3.3949 44 1 2.1394 -4.1323 2.0561 45 1 3.3728 -3.6523 0.7715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734294837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = 63.217157 kcal Electronic energy + Delta-G solvation = -27050.282187 eV Core-core repulsion = 23198.866574 eV Total energy + Delta-G solvation = -3851.415613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.04117 -39.97959 -37.71570 -36.58066 -34.96155 -33.62263 -32.39574 -31.79767 -30.40436 -28.38614 -26.94946 -25.80334 -25.38965 -23.26532 -23.05959 -22.20055 -21.19949 -20.50635 -19.10570 -18.02410 -17.66184 -17.64401 -16.97453 -16.13954 -16.07737 -15.51351 -15.29434 -14.86504 -14.77269 -14.77143 -14.10423 -13.87174 -13.69521 -13.24761 -13.13158 -12.88281 -12.69079 -12.56011 -12.31900 -12.22816 -12.09858 -11.82169 -11.59927 -11.45255 -11.22621 -11.03835 -10.98884 -10.74802 -10.57546 -10.37970 -10.13683 -9.77965 -9.76563 -9.27111 -9.03367 -8.72653 -8.44001 -8.18436 -6.45710 -6.18403 -3.88328 1.38885 2.05177 2.91041 3.11951 3.14824 3.24457 3.27404 3.32236 3.56024 3.72736 3.87299 4.12730 4.23610 4.35364 4.62875 4.73040 4.84832 4.92594 4.95682 5.00243 5.06255 5.08198 5.12843 5.16662 5.19868 5.27590 5.35133 5.39023 5.46810 5.54180 5.57714 5.58173 5.70453 5.75781 5.84667 5.85488 5.95090 6.02934 6.17208 6.17822 6.64910 6.74759 7.10150 7.57276 7.62880 8.12937 8.38423 8.62755 9.26956 10.89040 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.003638 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.162350 B = 7694.330069 C =10491.454861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.537 3.463 4 O -0.510 6.510 5 C -0.149 4.149 6 S -0.060 6.060 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.917 3.083 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.175 3.825 16 H 0.110 0.890 17 C 0.056 3.944 18 N -0.680 5.680 19 C 0.141 3.859 20 C 0.017 3.983 21 C -0.218 4.218 22 C -0.061 4.061 23 O 0.102 5.898 24 N -0.361 5.361 25 C -0.164 4.164 26 C -0.170 4.170 27 C -0.174 4.174 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.351 0.649 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.171 0.829 40 H 0.217 0.783 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -23.294 -6.497 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.354 5.354 3 C 0.325 3.675 4 O -0.383 6.383 5 C -0.300 4.300 6 S 0.167 5.833 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.503 5.503 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.070 3.930 16 H 0.128 0.872 17 C -0.074 4.074 18 N -0.313 5.313 19 C 0.011 3.989 20 C -0.142 4.142 21 C -0.240 4.240 22 C -0.142 4.142 23 O 0.034 5.966 24 N -0.064 5.064 25 C -0.184 4.184 26 C -0.207 4.207 27 C -0.212 4.212 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.171 0.829 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.189 0.811 40 H 0.233 0.767 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.181 -22.868 -6.206 23.908 hybrid contribution -2.397 0.583 0.057 2.467 sum -5.578 -22.284 -6.149 23.780 Atomic orbital electron populations 1.21746 0.80282 1.02680 1.02031 1.47830 1.06360 1.05379 1.75789 1.20275 0.87935 0.84383 0.74880 1.90683 1.13681 1.86555 1.47373 1.23548 1.04541 0.97357 1.04555 1.85383 1.07996 0.93252 1.96673 1.22864 0.94312 0.92276 1.58820 0.91028 1.24975 0.95636 0.98324 0.94568 1.70022 1.11721 1.21596 1.46968 0.86189 0.80337 0.80787 0.78324 1.20293 1.20746 1.19693 1.20561 0.99147 0.82371 0.90895 0.87159 1.22250 0.99553 0.96774 0.88810 1.60344 1.62756 1.07250 1.00981 1.20143 0.99430 0.94458 0.84869 1.23485 0.92157 0.98874 0.99733 1.22699 1.01329 1.04041 0.95897 1.26036 0.88261 0.97531 1.02388 1.84840 1.28787 1.51043 1.31887 1.73845 1.23139 1.10790 0.98625 1.22570 0.97800 1.00294 0.97747 1.23012 0.99890 1.01028 0.96773 1.22932 1.03538 0.91170 1.03570 0.92567 0.90873 0.91544 0.89452 0.89413 0.92229 0.94704 0.89685 0.82942 0.88777 0.93608 0.81115 0.76695 0.87751 0.88227 0.88870 0.88832 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.04 59.85 0.54 1.37 16 2 N -0.62 -8.68 1.88 -173.93 -0.33 -9.01 16 3 C 0.54 10.37 7.69 -10.99 -0.08 10.28 16 4 O -0.51 -11.78 15.19 5.56 0.08 -11.70 16 5 C -0.15 -3.13 4.78 36.00 0.17 -2.95 16 6 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 7 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 10 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 11 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.17 2.13 2.53 -67.93 -0.17 1.96 16 16 H 0.11 1.69 6.71 -51.93 -0.35 1.34 16 17 C 0.06 0.55 4.73 -3.82 -0.02 0.54 16 18 N -0.68 -8.13 6.48 -115.05 -0.75 -8.87 16 19 C 0.14 1.40 6.27 -4.97 -0.03 1.37 16 20 C 0.02 0.20 6.84 -82.10 -0.56 -0.37 16 21 C -0.22 -2.10 11.12 -39.38 -0.44 -2.54 16 22 C -0.06 -0.53 12.30 29.74 0.37 -0.17 16 23 O 0.10 1.23 11.20 17.19 0.19 1.43 16 24 N -0.36 -4.90 12.07 33.42 0.40 -4.50 16 25 C -0.16 -1.67 5.17 -90.62 -0.47 -2.14 16 26 C -0.17 -1.79 10.18 -26.69 -0.27 -2.06 16 27 C -0.17 -1.45 9.88 -26.69 -0.26 -1.71 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.82 6.67 -51.93 -0.35 0.48 16 30 H 0.07 0.57 6.32 -51.93 -0.33 0.25 16 31 H 0.09 1.72 7.41 -51.92 -0.38 1.34 16 32 H 0.09 1.72 8.11 -51.92 -0.42 1.29 16 33 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.03 0.30 6.74 -51.93 -0.35 -0.05 16 35 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 36 H 0.35 4.92 7.66 -39.30 -0.30 4.62 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 40 H 0.22 0.91 8.06 -52.48 -0.42 0.48 16 41 H 0.10 1.00 7.69 -51.93 -0.40 0.60 16 42 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.75 7.96 -51.93 -0.41 0.34 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -36.04 391.08 -8.65 -44.70 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.62 Total: 4.55 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.03 Total: -9.56 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.06 Total: -48.14 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.28 Total: -10.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.04 -8.65 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734294837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.915 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds