Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34783 * 119.99832 * 2 1 4 4 O 1.21275 * 119.99494 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.99936 * 0.02562 * 3 2 1 6 6 S 1.80997 * 109.46919 * 179.97438 * 5 3 2 7 7 C 1.76205 * 100.00225 * 179.97438 * 6 5 3 8 8 H 1.07999 * 119.99802 * 0.02562 * 7 6 5 9 9 C 1.38799 * 120.00108 * 179.97438 * 7 6 5 10 10 N 1.31631 * 119.99839 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99743 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47303 * 90.00738 * 11 9 7 13 13 H 1.48501 * 109.46935 * 210.00171 * 11 9 7 14 14 H 1.48498 * 109.47151 * 330.00133 * 11 9 7 15 15 C 1.46502 * 120.00067 * 180.02562 * 2 1 3 16 16 H 1.08999 * 109.46981 * 175.81977 * 15 2 1 17 17 C 1.52996 * 109.47178 * 55.81267 * 15 2 1 18 18 N 1.46904 * 109.47009 * 55.00359 * 17 15 2 19 19 C 1.46901 * 111.00078 * 179.97438 * 18 17 15 20 20 C 1.50704 * 109.47007 * 180.02562 * 19 18 17 21 21 C 1.41377 * 126.80322 * 94.71506 * 20 19 18 22 22 C 1.35450 * 103.98246 * 179.88939 * 21 20 19 23 23 O 1.34037 * 106.44656 * 0.36255 * 22 21 20 24 24 N 1.20921 * 111.56892 * 359.75505 * 23 22 21 25 25 C 1.53003 * 109.46607 * 295.81904 * 15 2 1 26 26 C 1.53002 * 117.49530 * 253.24113 * 25 15 2 27 27 C 1.52998 * 117.49520 * 184.58207 * 25 15 2 28 28 H 1.08991 * 109.46665 * 275.41491 * 1 2 3 29 29 H 1.09002 * 109.46910 * 35.41496 * 1 2 3 30 30 H 1.08998 * 109.46722 * 155.40978 * 1 2 3 31 31 H 1.08996 * 109.47316 * 299.99456 * 5 3 2 32 32 H 1.08998 * 109.47343 * 60.00037 * 5 3 2 33 33 H 0.97002 * 119.99793 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47382 * 295.00557 * 17 15 2 35 35 H 1.09004 * 109.47022 * 175.00056 * 17 15 2 36 36 H 1.00893 * 110.99878 * 303.95481 * 18 17 15 37 37 H 1.08999 * 109.47187 * 300.00291 * 19 18 17 38 38 H 1.09000 * 109.47301 * 60.00299 * 19 18 17 39 39 H 1.08003 * 128.00767 * 0.02562 * 21 20 19 40 40 H 1.08008 * 126.77218 * 180.09666 * 22 21 20 41 41 H 1.08998 * 115.55147 * 38.91334 * 25 15 2 42 42 H 1.09003 * 117.49869 * 0.02562 * 26 25 15 43 43 H 1.09005 * 117.49569 * 145.02333 * 26 25 15 44 44 H 1.09005 * 117.49984 * 214.97250 * 27 25 15 45 45 H 1.09000 * 117.50181 * 0.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0010 8 1 0.3763 5.0305 0.0011 9 6 1.9283 6.5081 0.0019 10 7 3.2267 6.7246 0.0024 11 14 0.7408 7.9500 0.0025 12 1 0.4258 8.3314 1.4027 13 1 1.3623 9.1033 -0.6967 14 1 -0.5097 7.5618 -0.6981 15 6 2.1976 -1.2687 -0.0006 16 1 3.2669 -1.0709 -0.0754 17 6 1.7507 -2.1151 -1.1942 18 7 1.9171 -1.3422 -2.4323 19 6 1.4975 -2.1252 -3.6022 20 6 1.6829 -1.3016 -4.8506 21 6 2.8040 -1.3097 -5.7119 22 6 2.4845 -0.4108 -6.6734 23 8 1.2724 0.0671 -6.3585 24 7 0.8447 -0.4378 -5.3464 25 6 1.9084 -2.0250 1.2977 26 6 3.0217 -2.0806 2.3458 27 6 2.6673 -3.3317 1.5380 28 1 -0.3632 0.0970 1.0230 29 1 -0.3633 0.8375 -0.5955 30 1 -0.3633 -0.9345 -0.4276 31 1 0.7585 2.5303 -0.8891 32 1 0.7591 2.5298 0.8908 33 1 3.5668 7.6330 0.0034 34 1 0.7021 -2.3876 -1.0741 35 1 2.3574 -3.0192 -1.2459 36 1 1.4156 -0.4681 -2.3830 37 1 2.1027 -3.0292 -3.6705 38 1 0.4473 -2.3981 -3.4991 39 1 3.7053 -1.8983 -5.6247 40 1 3.0892 -0.1308 -7.5234 41 1 0.8811 -1.9662 1.6572 42 1 3.9599 -1.5780 2.1106 43 1 2.7267 -2.0587 3.3949 44 1 2.1394 -4.1323 2.0561 45 1 3.3728 -3.6523 0.7715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734294837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = 38.672484 kcal Electronic energy + Delta-G solvation = -27051.346524 eV Core-core repulsion = 23198.866574 eV Total energy + Delta-G solvation = -3852.479950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.86592 -41.21239 -38.86590 -37.38468 -36.09793 -34.60006 -34.51636 -32.59431 -31.65108 -29.66679 -27.93196 -27.69103 -26.67284 -24.05904 -23.88872 -22.98721 -22.00253 -21.59731 -20.30692 -19.61054 -18.80760 -18.51043 -18.30992 -17.26840 -17.19831 -16.89366 -16.48471 -16.24553 -16.10180 -15.79875 -15.50999 -14.89343 -14.63804 -14.52119 -14.38964 -14.16267 -13.79306 -13.57127 -13.45532 -13.22971 -13.16616 -13.06887 -12.91273 -12.86108 -12.61748 -12.41132 -12.29576 -12.08083 -11.74614 -11.38218 -11.20399 -11.15427 -10.96384 -10.78807 -10.55314 -10.28621 -9.74249 -9.43008 -8.68178 -8.35781 -6.14039 0.62489 1.24035 1.27644 1.40885 1.43968 1.55024 1.60491 2.06326 2.26228 2.47384 2.84990 2.98164 3.09634 3.26057 3.32282 3.62801 3.70759 3.84412 3.92572 4.08681 4.12674 4.15587 4.21163 4.23777 4.30460 4.40152 4.41528 4.45875 4.50473 4.61291 4.65130 4.71447 4.80418 4.83911 4.88030 4.90165 5.05193 5.16903 5.25493 5.30229 5.39768 5.60529 5.91782 6.11508 6.18196 6.27824 7.05207 7.17780 7.33578 8.73606 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.003638 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.162350 B = 7694.330069 C =10491.454861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.536 3.464 4 O -0.560 6.560 5 C -0.123 4.123 6 S -0.149 6.149 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.015 3.985 10 N -0.911 5.911 11 Si 0.998 3.002 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.259 1.259 15 C 0.174 3.826 16 H 0.073 0.927 17 C 0.064 3.936 18 N -0.698 5.698 19 C 0.144 3.856 20 C 0.003 3.997 21 C -0.233 4.233 22 C -0.051 4.051 23 O 0.081 5.919 24 N -0.399 5.399 25 C -0.167 4.167 26 C -0.194 4.194 27 C -0.144 4.144 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.271 0.729 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.335 0.665 37 H 0.117 0.883 38 H 0.053 0.947 39 H 0.193 0.807 40 H 0.258 0.742 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 -25.268 -6.759 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.334 5.334 3 C 0.323 3.677 4 O -0.438 6.438 5 C -0.274 4.274 6 S 0.079 5.921 7 C -0.695 4.695 8 H 0.098 0.902 9 C -0.190 4.190 10 N -0.547 5.547 11 Si 0.819 3.181 12 H -0.191 1.191 13 H -0.201 1.201 14 H -0.183 1.183 15 C 0.071 3.929 16 H 0.091 0.909 17 C -0.065 4.065 18 N -0.331 5.331 19 C 0.015 3.985 20 C -0.156 4.156 21 C -0.254 4.254 22 C -0.132 4.132 23 O 0.016 5.984 24 N -0.106 5.106 25 C -0.186 4.186 26 C -0.231 4.231 27 C -0.181 4.181 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.153 0.847 37 H 0.135 0.865 38 H 0.071 0.929 39 H 0.211 0.789 40 H 0.274 0.726 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.136 0.864 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.414 -24.901 -6.480 26.293 hybrid contribution -1.683 1.056 0.111 1.990 sum -7.097 -23.845 -6.369 25.681 Atomic orbital electron populations 1.22034 0.77769 1.04289 1.03318 1.47761 1.07828 1.04475 1.73377 1.20009 0.87247 0.85306 0.75118 1.90666 1.15608 1.87262 1.50231 1.23355 1.02728 0.95478 1.05824 1.85549 1.12489 0.97101 1.96991 1.23185 0.94540 0.92776 1.59012 0.90197 1.26112 0.97597 1.01594 0.93651 1.70186 1.14094 1.22482 1.47949 0.84969 0.77871 0.76363 0.78880 1.19142 1.20123 1.18328 1.20668 0.96972 0.81805 0.93501 0.90910 1.22258 1.01171 0.96343 0.86742 1.60369 1.63079 1.07225 1.02412 1.20257 1.00317 0.94511 0.83453 1.23981 0.92593 0.98562 1.00452 1.23096 1.01706 1.04825 0.95797 1.26880 0.87108 0.96224 1.02972 1.84780 1.30238 1.51550 1.31806 1.73832 1.24732 1.12295 0.99766 1.22518 0.98305 1.01552 0.96239 1.23004 0.99164 1.03398 0.97532 1.23029 1.02276 0.90458 1.02377 0.90934 0.91273 0.88468 0.88197 0.87799 0.91957 0.92404 0.87674 0.84718 0.86475 0.92903 0.78948 0.72610 0.86255 0.90937 0.88197 0.86352 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.31 9.04 127.77 1.16 2.46 16 2 N -0.60 -16.45 1.88 -822.59 -1.55 -18.00 16 3 C 0.54 21.18 7.69 87.65 0.67 21.86 16 4 O -0.56 -27.35 15.19 -3.01 -0.05 -27.39 16 5 C -0.12 -5.21 4.78 71.23 0.34 -4.87 16 6 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 7 C -0.55 -32.23 9.50 67.95 0.65 -31.58 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 C 0.02 0.89 5.49 84.86 0.47 1.36 16 10 N -0.91 -57.04 13.22 21.65 0.29 -56.76 16 11 Si 1.00 44.57 29.55 68.60 2.03 46.60 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 15 C 0.17 4.07 2.53 44.99 0.11 4.19 16 16 H 0.07 2.31 6.71 -2.39 -0.02 2.29 16 17 C 0.06 1.10 4.73 86.30 0.41 1.51 16 18 N -0.70 -15.88 6.48 -517.92 -3.36 -19.23 16 19 C 0.14 2.62 6.27 85.56 0.54 3.16 16 20 C 0.00 0.07 6.84 43.58 0.30 0.36 16 21 C -0.23 -4.20 11.12 22.40 0.25 -3.95 16 22 C -0.05 -0.83 12.30 67.18 0.83 0.00 16 23 O 0.08 1.95 11.20 71.67 0.80 2.75 16 24 N -0.40 -10.91 12.07 -49.57 -0.60 -11.51 16 25 C -0.17 -3.03 5.17 -10.79 -0.06 -3.08 16 26 C -0.19 -3.96 10.18 30.62 0.31 -3.65 16 27 C -0.14 -1.98 9.88 30.62 0.30 -1.68 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.43 6.67 -2.39 -0.02 1.41 16 30 H 0.10 1.31 6.32 -2.39 -0.02 1.30 16 31 H 0.10 3.96 7.41 -2.40 -0.02 3.94 16 32 H 0.10 4.03 8.11 -2.40 -0.02 4.01 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.06 0.76 6.74 -2.39 -0.02 0.75 16 35 H 0.11 1.43 7.79 -2.38 -0.02 1.41 16 36 H 0.34 9.26 7.66 -89.70 -0.69 8.57 16 37 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 40 H 0.26 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.12 1.86 7.69 -2.39 -0.02 1.84 16 42 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 43 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.10 1.30 7.96 -2.39 -0.02 1.28 16 Total: -1.00 -83.93 391.08 3.00 -80.94 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.32 Total: 26.26 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 6.27 Total: -13.92 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -5.22 Total: -105.50 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.76 Total: -24.64 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -83.93 3.00 -80.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734294837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.608 kcal (2) G-P(sol) polarization free energy of solvation -83.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds