Wall clock time and date at job start Sat Apr 11 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99766 * 2 1 4 4 C 1.50694 * 109.46953 * 179.97438 * 3 2 1 5 5 N 1.30938 * 122.90907 * 270.00415 * 4 3 2 6 6 C 1.29434 * 117.36776 * 179.97438 * 5 4 3 7 7 S 1.70959 * 110.38851 * 359.72954 * 6 5 4 8 8 C 1.35669 * 122.90186 * 90.00703 * 4 3 2 9 9 C 1.46686 * 126.12844 * 359.97438 * 8 4 3 10 10 O 1.21684 * 119.99796 * 8.44799 * 9 8 4 11 11 N 1.34769 * 119.99835 * 188.44691 * 9 8 4 12 12 C 1.46501 * 120.00298 * 358.67431 * 11 9 8 13 13 C 1.46505 * 120.00133 * 178.67326 * 11 9 8 14 14 H 1.08998 * 109.46922 * 359.97438 * 13 11 9 15 15 C 1.53000 * 109.47067 * 119.99752 * 13 11 9 16 16 N 1.46495 * 109.47383 * 305.00484 * 15 13 11 17 17 C 1.36941 * 120.00046 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00155 * 359.97438 * 17 16 15 19 19 C 1.38819 * 120.00005 * 179.97438 * 17 16 15 20 20 N 1.31623 * 119.99745 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00059 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46936 * 90.00063 * 21 19 17 23 23 H 1.48494 * 109.47406 * 210.00112 * 21 19 17 24 24 H 1.48504 * 109.47057 * 330.00157 * 21 19 17 25 25 C 1.52994 * 109.47405 * 239.99898 * 13 11 9 26 26 C 1.53001 * 117.49761 * 111.24962 * 25 13 11 27 27 C 1.52998 * 117.50270 * 179.91308 * 25 13 11 28 28 H 1.09010 * 109.46894 * 59.99981 * 1 2 3 29 29 H 1.09003 * 109.46741 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47537 * 300.00018 * 1 2 3 31 31 H 1.09005 * 109.46714 * 59.99984 * 3 2 1 32 32 H 1.08998 * 109.47533 * 300.00396 * 3 2 1 33 33 H 1.07997 * 124.80313 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47369 * 276.32496 * 12 11 9 35 35 H 1.09004 * 109.47073 * 36.32649 * 12 11 9 36 36 H 1.08999 * 109.47466 * 156.32530 * 12 11 9 37 37 H 1.09003 * 109.46799 * 65.00429 * 15 13 11 38 38 H 1.08995 * 109.47025 * 184.99722 * 15 13 11 39 39 H 0.97003 * 120.00155 * 359.97438 * 16 15 13 40 40 H 0.97000 * 119.99810 * 179.97438 * 20 19 17 41 41 H 1.09004 * 115.55071 * 325.58387 * 25 13 11 42 42 H 1.09004 * 117.50101 * 215.00308 * 26 25 13 43 43 H 1.09000 * 117.49852 * 0.02731 * 26 25 13 44 44 H 1.08997 * 117.49215 * 359.97279 * 27 25 13 45 45 H 1.08994 * 117.50463 * 144.97391 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2212 1.1305 1.1002 6 6 5.5054 1.0283 0.9758 7 16 5.9422 0.9854 -0.6765 8 6 4.2476 1.1283 -1.1381 9 6 3.7248 1.1691 -2.5081 10 8 2.5496 1.4170 -2.7036 11 7 4.5460 0.9321 -3.5500 12 6 5.9669 0.6624 -3.3163 13 6 4.0179 0.9442 -4.9165 14 1 2.9499 1.1603 -4.8913 15 6 4.7375 2.0205 -5.7318 16 7 4.6198 3.3110 -5.0486 17 6 5.1896 4.4297 -5.5955 18 1 5.7261 4.3606 -6.5302 19 6 5.0775 5.6527 -4.9483 20 7 4.4232 5.7371 -3.8094 21 14 5.8554 7.1786 -5.6939 22 1 4.8774 7.8447 -6.5910 23 1 6.2491 8.1137 -4.6096 24 1 7.0581 6.7904 -6.4738 25 6 4.2459 -0.4233 -5.5635 26 6 3.0140 -1.2860 -5.8447 27 6 3.7590 -0.6147 -7.0013 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 6.2021 0.9735 1.7992 34 1 6.5041 1.6055 -3.2156 35 1 6.0806 0.0801 -2.4018 36 1 6.3734 0.1008 -4.1574 37 1 5.7905 1.7571 -5.8320 38 1 4.2848 2.0903 -6.7209 39 1 4.1376 3.3732 -4.2092 40 1 4.3453 6.5916 -3.3570 41 1 5.1625 -0.9352 -5.2703 42 1 3.1200 -2.3654 -5.7365 43 1 2.0411 -0.8790 -5.5692 44 1 3.2758 0.2336 -7.4860 45 1 4.3553 -1.2521 -7.6540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734306518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:36 Heat of formation + Delta-G solvation = 1.513680 kcal Electronic energy + Delta-G solvation = -28374.521996 eV Core-core repulsion = 24520.430719 eV Total energy + Delta-G solvation = -3854.091277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64785 -40.63127 -38.71185 -38.52478 -36.62041 -35.87931 -33.33148 -32.38017 -30.31417 -28.97529 -28.00523 -27.09067 -25.99811 -25.52908 -23.94542 -22.94108 -22.72646 -20.80807 -19.91023 -19.72786 -19.15254 -17.87868 -17.72839 -17.48351 -16.80041 -16.69430 -16.54417 -16.42433 -15.91606 -15.51747 -15.43396 -15.19992 -14.90764 -14.76791 -14.59219 -14.16543 -14.09431 -13.83729 -13.53956 -13.17669 -13.12227 -12.87762 -12.78700 -12.52593 -12.41549 -12.27892 -12.20644 -12.10637 -11.78426 -11.39293 -11.17131 -10.96267 -10.90982 -10.66906 -10.55711 -10.47516 -10.08964 -9.58220 -9.00191 -7.92940 -5.23258 -0.81637 0.14790 0.58602 1.32372 1.45926 1.48152 1.56440 1.81797 1.99387 2.55062 2.83183 2.90350 3.29100 3.40218 3.47384 3.64154 3.88787 3.93605 4.01023 4.07040 4.11328 4.14396 4.29863 4.36255 4.37227 4.45141 4.49108 4.52847 4.58995 4.63949 4.73159 4.76909 4.80315 4.89020 4.95522 5.04848 5.08137 5.22927 5.30193 5.47965 5.55126 6.06625 6.20216 6.26282 6.57343 6.99656 7.32857 8.08287 8.31676 9.29994 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.004642 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.140480 B = 6030.122360 C = 7322.603766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.129 3.871 4 C 0.122 3.878 5 N -0.495 5.495 6 C 0.002 3.998 7 S 0.274 5.726 8 C -0.305 4.305 9 C 0.589 3.411 10 O -0.560 6.560 11 N -0.586 5.586 12 C 0.062 3.938 13 C 0.173 3.827 14 H 0.069 0.931 15 C 0.149 3.851 16 N -0.742 5.742 17 C -0.240 4.240 18 H 0.080 0.920 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.291 1.291 23 H -0.298 1.298 24 H -0.264 1.264 25 C -0.168 4.168 26 C -0.174 4.174 27 C -0.156 4.156 28 H 0.038 0.962 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.040 0.960 38 H 0.033 0.967 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.130 0.870 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -17.888 4.755 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C 0.050 3.950 4 C -0.018 4.018 5 N -0.209 5.209 6 C -0.291 4.291 7 S 0.532 5.468 8 C -0.430 4.430 9 C 0.377 3.623 10 O -0.441 6.441 11 N -0.316 5.316 12 C -0.082 4.082 13 C 0.070 3.930 14 H 0.087 0.913 15 C 0.022 3.978 16 N -0.385 5.385 17 C -0.372 4.372 18 H 0.098 0.902 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.219 1.219 23 H -0.225 1.225 24 H -0.188 1.188 25 C -0.187 4.187 26 C -0.211 4.211 27 C -0.194 4.194 28 H 0.057 0.943 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.148 0.852 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.381 -17.916 4.564 19.000 hybrid contribution -1.276 1.775 0.265 2.202 sum 3.105 -16.141 4.829 17.132 Atomic orbital electron populations 1.22925 0.78950 1.04073 1.00682 1.87810 1.21857 1.26755 1.95626 1.20954 0.86060 0.85902 1.02038 1.20253 0.97290 0.97907 0.86302 1.66140 1.06731 1.17227 1.30847 1.29870 0.95087 0.98918 1.05239 1.83957 1.01618 1.62235 0.98961 1.25595 0.99796 1.19319 0.98275 1.17001 0.85458 0.76384 0.83480 1.90717 1.17691 1.50679 1.85035 1.47465 1.09772 1.68792 1.05580 1.22214 0.80111 1.02404 1.03431 1.20766 0.98250 0.94277 0.79702 0.91317 1.21117 0.98085 0.84381 0.94247 1.42530 1.65552 1.04082 1.26322 1.19635 1.26028 0.87500 1.04035 0.90180 1.25573 1.02364 1.00819 0.97949 1.69883 1.48547 1.24749 1.18901 0.85147 0.78319 0.79444 0.76883 1.21873 1.22482 1.18812 1.22470 1.00499 0.95469 1.00241 1.23046 0.95280 0.99555 1.03259 1.23018 1.03185 1.02978 0.90200 0.94347 0.87595 0.92478 0.91102 0.90976 0.73912 0.91966 0.89767 0.86197 0.94165 0.94967 0.79847 0.94336 0.85178 0.86760 0.90591 0.89547 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -13.69 10.69 -148.98 -1.59 -15.28 16 3 C 0.13 4.62 5.85 71.23 0.42 5.04 16 4 C 0.12 4.35 6.42 42.09 0.27 4.62 16 5 N -0.49 -15.38 10.50 -190.40 -2.00 -17.38 16 6 C 0.00 0.04 12.22 130.60 1.60 1.64 16 7 S 0.27 6.38 18.16 -56.49 -1.03 5.35 16 8 C -0.31 -10.67 6.26 23.88 0.15 -10.52 16 9 C 0.59 23.46 7.33 86.45 0.63 24.09 16 10 O -0.56 -26.16 13.59 -4.30 -0.06 -26.22 16 11 N -0.59 -19.86 2.24 -827.31 -1.86 -21.72 16 12 C 0.06 1.57 8.05 127.77 1.03 2.59 16 13 C 0.17 5.93 2.41 44.99 0.11 6.03 16 14 H 0.07 2.84 6.65 -2.39 -0.02 2.83 16 15 C 0.15 5.82 5.32 86.38 0.46 6.28 16 16 N -0.74 -38.36 5.43 -343.46 -1.87 -40.23 16 17 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 19 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 20 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 21 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 25 C -0.17 -4.07 5.12 -10.80 -0.06 -4.13 16 26 C -0.17 -3.92 10.18 30.62 0.31 -3.61 16 27 C -0.16 -3.28 9.80 30.62 0.30 -2.98 16 28 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 32 H 0.07 2.95 5.85 -2.39 -0.01 2.93 16 33 H 0.24 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.06 1.79 7.88 -2.39 -0.02 1.77 16 35 H 0.09 1.77 4.47 -20.94 -0.09 1.67 16 36 H 0.12 2.26 6.52 -2.39 -0.02 2.24 16 37 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 38 H 0.03 1.27 7.48 -2.39 -0.02 1.25 16 39 H 0.37 21.40 7.07 -92.71 -0.65 20.75 16 40 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.13 2.53 6.68 -2.38 -0.02 2.52 16 42 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 44 H 0.09 2.05 7.67 -2.39 -0.02 2.03 16 45 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.68 379.20 1.97 -77.71 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.28 Total: 35.72 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 7.77 Total: 14.61 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -5.44 Total: -140.36 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.65 Total: -41.50 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -1.03 Total: 5.35 kcal Total: -79.68 1.97 -77.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734306518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.224 kcal (2) G-P(sol) polarization free energy of solvation -79.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds