Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47507 * 2 1 4 4 C 1.34777 * 119.99858 * 89.99839 * 3 2 1 5 5 O 1.21279 * 120.00166 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.99762 * 0.02562 * 4 3 2 7 7 S 1.81003 * 109.46853 * 179.97438 * 6 4 3 8 8 C 1.76196 * 99.99846 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00030 * 359.97438 * 8 7 6 10 10 C 1.38802 * 119.99637 * 180.02562 * 8 7 6 11 11 N 1.31628 * 120.00513 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99570 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46946 * 90.00549 * 12 10 8 14 14 H 1.48504 * 109.46826 * 210.00017 * 12 10 8 15 15 H 1.48496 * 109.47486 * 329.99998 * 12 10 8 16 16 C 1.46496 * 119.99884 * 270.00494 * 3 2 1 17 17 H 1.09005 * 109.46750 * 179.97438 * 16 3 2 18 18 C 1.52996 * 109.47640 * 59.99862 * 16 3 2 19 19 C 1.53001 * 109.47195 * 299.99538 * 16 3 2 20 20 N 1.46499 * 109.46977 * 305.00394 * 19 16 3 21 21 C 1.34777 * 120.00042 * 180.02562 * 20 19 16 22 22 O 1.21694 * 119.99887 * 359.97438 * 21 20 19 23 23 C 1.46679 * 120.00324 * 180.02562 * 21 20 19 24 24 C 1.37868 * 126.23275 * 179.97438 * 23 21 20 25 25 C 1.39839 * 107.08247 * 179.97438 * 24 23 21 26 26 C 1.35452 * 107.86394 * 359.97438 * 25 24 23 27 27 N 1.35531 * 108.87382 * 359.73574 * 26 25 24 28 28 H 0.96995 * 125.67779 * 180.30742 * 27 26 25 29 29 H 1.08998 * 109.47528 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46948 * 300.00127 * 1 2 3 31 31 H 1.08997 * 109.47177 * 59.99685 * 1 2 3 32 32 H 1.09005 * 109.46948 * 239.99872 * 2 1 3 33 33 H 1.08997 * 109.47177 * 120.00315 * 2 1 3 34 34 H 1.09000 * 109.47318 * 299.99141 * 6 4 3 35 35 H 1.09000 * 109.47161 * 59.99772 * 6 4 3 36 36 H 0.96995 * 120.00407 * 180.02562 * 11 10 8 37 37 H 1.08992 * 109.47336 * 179.97438 * 18 16 3 38 38 H 1.09005 * 109.47109 * 299.99853 * 18 16 3 39 39 H 1.09000 * 109.47163 * 59.99456 * 18 16 3 40 40 H 1.08997 * 109.47014 * 65.00060 * 19 16 3 41 41 H 1.09001 * 109.47120 * 185.00431 * 19 16 3 42 42 H 0.96999 * 120.00504 * 359.97438 * 20 19 16 43 43 H 1.07993 * 126.46237 * 0.03633 * 24 23 21 44 44 H 1.07999 * 126.06406 * 179.97438 * 25 24 23 45 45 H 1.08007 * 125.56336 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 1.1672 5 8 2.6470 3.1601 1.1673 6 6 1.9923 1.3058 2.4723 7 16 2.3850 2.4145 3.8481 8 6 2.0114 1.3586 5.2082 9 1 1.6555 0.3545 5.0304 10 6 2.1735 1.8176 6.5081 11 7 2.6058 3.0418 6.7248 12 14 1.7766 0.6982 7.9500 13 1 2.9914 -0.0656 8.3326 14 1 1.3238 1.5177 9.1027 15 1 0.6994 -0.2471 7.5612 16 6 2.2625 2.0718 -1.2687 17 1 2.6194 3.0823 -1.0695 18 6 0.9616 2.1399 -2.0710 19 6 3.3171 1.3069 -2.0711 20 7 4.5229 1.1380 -1.2564 21 6 5.5914 0.4895 -1.7605 22 8 5.5544 0.0437 -2.8923 23 6 6.7985 0.3199 -0.9447 24 6 7.9586 -0.3185 -1.3288 25 6 8.8441 -0.2462 -0.2489 26 6 8.2234 0.4207 0.7535 27 7 6.9820 0.7755 0.3412 28 1 6.3306 1.2667 0.8657 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.9444 1.0115 2.5303 35 1 2.6228 0.4185 2.5298 36 1 2.7194 3.3624 7.6331 37 1 1.1431 2.6541 -3.0147 38 1 0.6043 1.1295 -2.2702 39 1 0.2103 2.6847 -1.4994 40 1 2.9247 0.3280 -2.3464 41 1 3.5636 1.8665 -2.9734 42 1 4.5526 1.4936 -0.3544 43 1 8.1482 -0.7853 -2.2839 44 1 9.8451 -0.6505 -0.2193 45 1 8.6500 0.6385 1.7215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735593421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -28.623320 kcal Electronic energy + Delta-G solvation = -27448.241688 eV Core-core repulsion = 23592.843573 eV Total energy + Delta-G solvation = -3855.398115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36614 -40.23803 -38.97805 -36.75691 -34.74546 -32.58022 -32.52571 -31.09182 -30.29966 -29.55426 -28.80854 -26.51689 -25.58212 -23.52489 -22.74364 -21.79440 -20.61803 -20.16177 -19.48677 -18.71508 -17.85693 -17.20628 -16.35725 -16.03019 -15.87081 -15.35444 -15.07880 -14.89077 -14.39565 -14.12750 -13.99906 -13.80863 -13.77893 -13.53979 -13.31269 -13.20191 -12.85203 -12.77079 -12.64337 -12.56212 -12.42158 -12.34444 -12.00488 -11.69173 -11.17528 -11.13837 -11.10849 -10.97170 -10.83436 -10.27211 -9.90397 -9.54355 -9.32779 -9.15975 -9.13608 -8.77173 -8.35722 -8.35432 -6.62430 -6.31542 -4.03303 1.36103 2.64323 2.69643 2.83142 2.94378 3.04701 3.15194 3.18851 3.23388 3.29919 3.46709 4.10924 4.38812 4.64313 4.76596 4.79646 4.93471 4.99228 5.00525 5.04022 5.16354 5.22535 5.23307 5.29471 5.32042 5.35173 5.44376 5.46539 5.64464 5.68378 5.77683 5.83406 5.89990 5.94205 5.98269 6.02464 6.15002 6.17590 6.52753 6.57395 6.79035 7.18839 7.33972 7.36715 7.50331 8.00429 8.25458 8.34921 9.14345 10.75722 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.003643 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.220457 B = 7684.751046 C = 9821.089356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 N -0.614 5.614 4 C 0.532 3.468 5 O -0.517 6.517 6 C -0.152 4.152 7 S -0.061 6.061 8 C -0.537 4.537 9 H 0.072 0.928 10 C 0.076 3.924 11 N -0.867 5.867 12 Si 0.917 3.083 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.272 1.272 16 C 0.123 3.877 17 H 0.109 0.891 18 C -0.159 4.159 19 C 0.113 3.887 20 N -0.726 5.726 21 C 0.591 3.409 22 O -0.536 6.536 23 C -0.062 4.062 24 C -0.107 4.107 25 C -0.217 4.217 26 C 0.031 3.969 27 N -0.537 5.537 28 H 0.420 0.580 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.269 0.731 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.399 0.601 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -6.539 -16.149 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.018 4.018 3 N -0.351 5.351 4 C 0.320 3.680 5 O -0.391 6.391 6 C -0.302 4.302 7 S 0.166 5.834 8 C -0.685 4.685 9 H 0.090 0.910 10 C -0.134 4.134 11 N -0.502 5.502 12 Si 0.743 3.257 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.197 1.197 16 C 0.019 3.981 17 H 0.127 0.873 18 C -0.217 4.217 19 C -0.012 4.012 20 N -0.377 5.377 21 C 0.379 3.621 22 O -0.413 6.413 23 C -0.175 4.175 24 C -0.134 4.134 25 C -0.241 4.241 26 C -0.106 4.106 27 N -0.132 5.132 28 H 0.258 0.742 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.234 0.766 43 H 0.164 0.836 44 H 0.161 0.839 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.440 -4.929 -16.786 17.829 hybrid contribution -1.093 -1.710 1.779 2.699 sum 2.346 -6.639 -15.006 16.576 Atomic orbital electron populations 1.22390 0.95742 1.02358 1.03144 1.21525 0.94673 0.82364 1.03275 1.48114 1.67398 1.14453 1.05103 1.20451 0.76381 0.86489 0.84700 1.90708 1.44393 1.17248 1.86768 1.23604 1.05032 1.04435 0.97169 1.85360 1.86662 1.18026 0.93348 1.22841 1.52036 1.01445 0.92153 0.90966 1.24977 0.94556 0.95499 0.98366 1.70002 1.42869 1.15575 1.21769 0.86189 0.78791 0.79934 0.80739 1.20225 1.20688 1.19658 1.21295 0.94972 0.98140 0.83721 0.87294 1.22173 0.96686 1.02791 1.00082 1.21767 0.84136 1.01223 0.94054 1.45826 1.14658 1.58564 1.18668 1.17071 0.81403 0.77771 0.85856 1.90821 1.82334 1.49971 1.18173 1.20394 0.98150 1.11939 0.87059 1.21289 0.91499 1.00846 0.99748 1.20900 1.01174 1.07940 0.94122 1.22150 0.85391 1.02280 1.00776 1.42158 1.14636 1.43863 1.12567 0.74201 0.91681 0.91928 0.91704 0.90503 0.90011 0.89077 0.89427 0.92116 0.91256 0.91599 0.91340 0.90881 0.90164 0.76638 0.83645 0.83917 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 9.96 37.16 0.37 -1.25 16 2 C 0.10 1.03 5.35 -4.04 -0.02 1.01 16 3 N -0.61 -7.31 1.88 -166.11 -0.31 -7.63 16 4 C 0.53 8.73 7.40 -10.98 -0.08 8.65 16 5 O -0.52 -10.26 15.19 5.56 0.08 -10.17 16 6 C -0.15 -2.80 4.71 36.01 0.17 -2.63 16 7 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 8 C -0.54 -14.55 9.50 30.94 0.29 -14.26 16 9 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 10 C 0.08 2.07 5.49 -17.43 -0.10 1.97 16 11 N -0.87 -25.15 13.22 55.49 0.73 -24.41 16 12 Si 0.92 20.67 29.55 -169.99 -5.02 15.64 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 16 C 0.12 1.28 2.80 -67.93 -0.19 1.09 16 17 H 0.11 1.35 6.90 -51.93 -0.36 0.99 16 18 C -0.16 -1.30 8.14 37.16 0.30 -1.00 16 19 C 0.11 1.14 4.92 -4.04 -0.02 1.12 16 20 N -0.73 -8.42 5.38 -61.62 -0.33 -8.76 16 21 C 0.59 7.98 7.79 -12.85 -0.10 7.88 16 22 O -0.54 -8.63 16.88 5.19 0.09 -8.54 16 23 C -0.06 -0.79 7.06 -81.98 -0.58 -1.37 16 24 C -0.11 -1.29 10.65 -39.12 -0.42 -1.71 16 25 C -0.22 -2.24 10.81 -39.98 -0.43 -2.67 16 26 C 0.03 0.31 11.89 -16.91 -0.20 0.10 16 27 N -0.54 -5.84 5.99 -9.39 -0.06 -5.90 16 28 H 0.42 4.20 8.19 -40.82 -0.33 3.86 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.68 7.22 -51.93 -0.38 0.31 16 31 H 0.06 0.54 5.44 -51.93 -0.28 0.25 16 32 H 0.08 0.66 6.53 -51.93 -0.34 0.32 16 33 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 34 H 0.09 1.61 7.19 -51.92 -0.37 1.23 16 35 H 0.09 1.49 7.40 -51.92 -0.38 1.11 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.72 6.88 -51.93 -0.36 0.36 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 4.70 7.00 -40.82 -0.29 4.42 16 43 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -34.04 384.68 -8.48 -42.53 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.25 Total: 8.24 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.00 Total: -3.06 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.03 Total: -46.69 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.04 -8.48 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735593421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.904 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds