Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 O 1.21273 * 120.00521 * 240.00093 * 4 2 1 6 6 N 1.34786 * 119.99672 * 60.00403 * 4 2 1 7 7 C 1.46499 * 119.99820 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46799 * 180.02562 * 7 6 4 9 9 N 1.46504 * 109.46876 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99559 * 270.00119 * 9 8 7 11 11 C 1.34769 * 120.00244 * 89.99701 * 9 8 7 12 12 O 1.21283 * 120.00522 * 0.02562 * 11 9 8 13 13 C 1.50703 * 119.99912 * 179.97438 * 11 9 8 14 14 S 1.81004 * 109.47204 * 180.02562 * 13 11 9 15 15 C 1.76191 * 100.00118 * 180.02562 * 14 13 11 16 16 H 1.08012 * 119.99933 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00366 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99536 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00321 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46977 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47224 * 120.00003 * 19 17 15 22 22 H 1.48504 * 109.46891 * 239.99943 * 19 17 15 23 23 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 24 24 C 1.36342 * 125.63529 * 59.69162 * 23 2 1 25 25 C 1.34855 * 108.21709 * 179.83229 * 24 23 2 26 26 C 1.40888 * 107.41813 * 0.42727 * 25 24 23 27 27 C 1.34850 * 107.41622 * 359.73240 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 0.96999 * 119.99591 * 359.97438 * 6 4 2 32 32 H 1.08992 * 109.47397 * 299.99990 * 7 6 4 33 33 H 1.08996 * 109.46733 * 60.00178 * 7 6 4 34 34 H 1.09002 * 109.47075 * 299.99543 * 8 7 6 35 35 H 1.08992 * 109.46974 * 60.00335 * 8 7 6 36 36 H 1.08997 * 109.47248 * 89.99836 * 10 9 8 37 37 H 1.09001 * 109.47073 * 210.00061 * 10 9 8 38 38 H 1.09004 * 109.47004 * 329.99403 * 10 9 8 39 39 H 1.08996 * 109.47306 * 300.00034 * 13 11 9 40 40 H 1.08996 * 109.46943 * 60.00200 * 13 11 9 41 41 H 0.97005 * 120.00241 * 179.97438 * 18 17 15 42 42 H 1.08002 * 125.89222 * 359.95776 * 24 23 2 43 43 H 1.08007 * 126.28947 * 180.16418 * 25 24 23 44 44 H 1.07994 * 126.29515 * 179.73538 * 26 25 24 45 45 H 1.08002 * 125.89108 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6861 -0.2187 -4.9000 9 7 2.1744 -0.9094 -6.0961 10 6 3.4547 -0.5226 -6.6939 11 6 1.4458 -1.9007 -6.6465 12 8 0.3856 -2.2207 -6.1520 13 6 1.9479 -2.6107 -7.8773 14 16 0.7551 -3.8796 -8.3707 15 6 1.5712 -4.5317 -9.7895 16 1 2.5236 -4.1265 -10.0985 17 6 0.9900 -5.5654 -10.5107 18 7 -0.1708 -6.0588 -10.1343 19 14 1.8556 -6.2572 -12.0145 20 1 3.1364 -5.5354 -12.2241 21 1 2.1292 -7.7019 -11.8073 22 1 0.9891 -6.0836 -13.2080 23 7 2.0184 -0.6906 1.1962 24 6 1.7559 -1.9868 1.5279 25 6 2.3799 -2.2586 2.6921 26 6 3.0440 -1.0846 3.0988 27 6 2.8055 -0.1417 2.1647 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1489 0.5385 -2.5435 32 1 3.2855 -0.9400 -3.6506 33 1 1.8326 -1.9681 -3.6508 34 1 0.5960 -0.2188 -4.9004 35 1 2.0494 0.8088 -4.8995 36 1 4.2563 -1.1120 -6.2488 37 1 3.4237 -0.7041 -7.7682 38 1 3.6366 0.5362 -6.5094 39 1 2.0690 -1.8918 -8.6876 40 1 2.9080 -3.0788 -7.6604 41 1 -0.5773 -6.7810 -10.6385 42 1 1.1539 -2.6773 0.9559 43 1 2.3687 -3.2018 3.2183 44 1 3.6355 -0.9622 3.9941 45 1 3.1740 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737721261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -9.996014 kcal Electronic energy + Delta-G solvation = -26006.438927 eV Core-core repulsion = 22151.848553 eV Total energy + Delta-G solvation = -3854.590374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.62333 -39.96405 -39.39908 -36.11380 -34.88134 -34.50044 -32.45978 -30.89248 -29.62599 -28.88595 -28.33110 -26.60463 -25.54669 -24.96101 -23.12325 -21.38047 -20.64995 -20.01587 -19.26032 -18.10265 -17.74998 -17.32428 -16.75281 -16.47075 -15.78898 -15.56862 -15.33982 -14.83210 -14.71875 -14.51257 -13.98041 -13.89104 -13.83359 -13.60949 -13.33247 -13.05612 -12.89949 -12.67700 -12.60964 -12.48783 -12.47833 -12.38167 -12.25310 -12.03656 -11.92062 -11.54452 -11.09364 -11.05221 -10.78366 -10.34047 -9.83510 -9.51773 -9.46831 -9.10374 -8.82342 -8.72790 -8.27066 -8.25136 -6.54265 -6.24848 -3.95864 1.96901 2.13242 2.42111 2.70249 2.91915 2.97072 3.06288 3.19611 3.25168 3.29488 3.55602 4.05443 4.16932 4.23803 4.27520 4.57124 4.63343 4.73095 4.97955 4.99582 4.99753 5.01845 5.10553 5.12883 5.16424 5.33964 5.40395 5.48539 5.50083 5.51778 5.60133 5.68348 5.73729 5.83604 5.93208 6.07335 6.16795 6.17861 6.46207 6.86285 6.94381 7.07700 7.19919 7.34725 7.56900 7.74962 8.32197 8.41011 9.20680 10.82641 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.001857 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.053451 B =15071.102268 C =15578.633473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.123 0.877 4 C 0.500 3.500 5 O -0.512 6.512 6 N -0.721 5.721 7 C 0.103 3.897 8 C 0.109 3.891 9 N -0.623 5.623 10 C 0.079 3.921 11 C 0.534 3.466 12 O -0.511 6.511 13 C -0.151 4.151 14 S -0.062 6.062 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.280 1.280 23 N -0.435 5.435 24 C 0.018 3.982 25 C -0.209 4.209 26 C -0.196 4.196 27 C -0.023 4.023 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.401 0.599 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.268 0.732 42 H 0.156 0.844 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 19.453 19.882 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.141 0.859 4 C 0.283 3.717 5 O -0.386 6.386 6 N -0.375 5.375 7 C -0.022 4.022 8 C -0.015 4.015 9 N -0.359 5.359 10 C -0.064 4.064 11 C 0.322 3.678 12 O -0.385 6.385 13 C -0.301 4.301 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.206 1.206 23 N -0.112 5.112 24 C -0.112 4.112 25 C -0.233 4.233 26 C -0.221 4.221 27 C -0.151 4.151 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.173 0.827 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.980 18.279 20.330 27.628 hybrid contribution 1.712 0.312 -1.670 2.412 sum 5.692 18.592 18.661 26.949 Atomic orbital electron populations 1.22155 0.90987 1.04546 1.04131 1.21242 0.96946 0.97347 0.83407 0.85936 1.20626 0.81103 0.85349 0.84599 1.90818 1.36414 1.25204 1.86169 1.45769 1.54008 1.32315 1.05397 1.21825 0.99607 0.97800 0.82930 1.21445 1.01348 0.95116 0.83576 1.47743 1.22556 1.37407 1.28230 1.21833 0.84594 1.00368 0.99595 1.20434 0.83905 0.78605 0.84864 1.90706 1.21965 1.63163 1.62648 1.23562 1.06050 1.03454 0.97032 1.85406 1.25595 1.37425 1.35073 1.22892 1.09070 1.22840 1.13528 0.90846 1.25000 0.95001 0.95639 0.97968 1.70025 1.15764 1.25327 1.39108 0.86108 0.79301 0.78793 0.81243 1.19602 1.20533 1.20554 1.43693 1.40058 1.10683 1.16730 1.21696 1.05476 0.85568 0.98440 1.20865 1.04805 0.99311 0.98288 1.20855 1.06302 0.93839 1.01094 1.21742 1.01859 0.99816 0.91650 0.89953 0.90817 0.90291 0.76465 0.91180 0.90407 0.89106 0.90189 0.92563 0.90297 0.91266 0.89099 0.89102 0.92202 0.82697 0.84834 0.84858 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.13 37.16 0.34 -0.48 16 2 C 0.12 0.82 3.36 -69.08 -0.23 0.59 16 3 H 0.12 0.49 8.06 -51.93 -0.42 0.07 16 4 C 0.50 5.08 7.11 -10.98 -0.08 5.00 16 5 O -0.51 -7.84 15.47 5.56 0.09 -7.75 16 6 N -0.72 -5.72 5.45 -60.30 -0.33 -6.05 16 7 C 0.10 1.10 6.00 -4.04 -0.02 1.07 16 8 C 0.11 1.06 5.57 -4.04 -0.02 1.04 16 9 N -0.62 -7.87 2.87 -181.57 -0.52 -8.39 16 10 C 0.08 0.73 10.29 59.85 0.62 1.34 16 11 C 0.53 9.61 7.69 -10.99 -0.08 9.52 16 12 O -0.51 -11.10 15.44 5.55 0.09 -11.01 16 13 C -0.15 -2.96 4.71 36.01 0.17 -2.79 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 16 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 19 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 N -0.43 -4.26 2.40 -111.25 -0.27 -4.53 16 24 C 0.02 0.20 9.57 -16.75 -0.16 0.04 16 25 C -0.21 -2.34 10.86 -39.78 -0.43 -2.77 16 26 C -0.20 -2.01 10.86 -39.78 -0.43 -2.44 16 27 C -0.02 -0.21 11.39 -16.75 -0.19 -0.40 16 28 H 0.08 0.25 7.56 -51.93 -0.39 -0.15 16 29 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 1.71 7.89 -40.82 -0.32 1.39 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.99 7.42 -51.93 -0.39 0.60 16 35 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 38 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 39 H 0.09 1.63 7.40 -51.92 -0.38 1.25 16 40 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -38.57 395.32 -8.64 -47.21 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.82 Total: 0.54 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.33 Total: -3.09 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.38 Total: -44.23 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.17 Total: -18.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.57 -8.64 -47.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737721261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.214 kcal (2) G-P(sol) polarization free energy of solvation -38.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds