Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 O 1.21273 * 120.00521 * 240.00093 * 4 2 1 6 6 N 1.34786 * 119.99672 * 60.00403 * 4 2 1 7 7 C 1.46499 * 119.99820 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46799 * 180.02562 * 7 6 4 9 9 N 1.46504 * 109.46876 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99559 * 270.00119 * 9 8 7 11 11 C 1.34769 * 120.00244 * 89.99701 * 9 8 7 12 12 O 1.21283 * 120.00522 * 0.02562 * 11 9 8 13 13 C 1.50703 * 119.99912 * 179.97438 * 11 9 8 14 14 S 1.81004 * 109.47204 * 180.02562 * 13 11 9 15 15 C 1.76191 * 100.00118 * 180.02562 * 14 13 11 16 16 H 1.08012 * 119.99933 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00366 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99536 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00321 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46977 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47224 * 120.00003 * 19 17 15 22 22 H 1.48504 * 109.46891 * 239.99943 * 19 17 15 23 23 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 24 24 C 1.36342 * 125.63529 * 59.69162 * 23 2 1 25 25 C 1.34855 * 108.21709 * 179.83229 * 24 23 2 26 26 C 1.40888 * 107.41813 * 0.42727 * 25 24 23 27 27 C 1.34850 * 107.41622 * 359.73240 * 26 25 24 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 0.96999 * 119.99591 * 359.97438 * 6 4 2 32 32 H 1.08992 * 109.47397 * 299.99990 * 7 6 4 33 33 H 1.08996 * 109.46733 * 60.00178 * 7 6 4 34 34 H 1.09002 * 109.47075 * 299.99543 * 8 7 6 35 35 H 1.08992 * 109.46974 * 60.00335 * 8 7 6 36 36 H 1.08997 * 109.47248 * 89.99836 * 10 9 8 37 37 H 1.09001 * 109.47073 * 210.00061 * 10 9 8 38 38 H 1.09004 * 109.47004 * 329.99403 * 10 9 8 39 39 H 1.08996 * 109.47306 * 300.00034 * 13 11 9 40 40 H 1.08996 * 109.46943 * 60.00200 * 13 11 9 41 41 H 0.97005 * 120.00241 * 179.97438 * 18 17 15 42 42 H 1.08002 * 125.89222 * 359.95776 * 24 23 2 43 43 H 1.08007 * 126.28947 * 180.16418 * 25 24 23 44 44 H 1.07994 * 126.29515 * 179.73538 * 26 25 24 45 45 H 1.08002 * 125.89108 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6861 -0.2187 -4.9000 9 7 2.1744 -0.9094 -6.0961 10 6 3.4547 -0.5226 -6.6939 11 6 1.4458 -1.9007 -6.6465 12 8 0.3856 -2.2207 -6.1520 13 6 1.9479 -2.6107 -7.8773 14 16 0.7551 -3.8796 -8.3707 15 6 1.5712 -4.5317 -9.7895 16 1 2.5236 -4.1265 -10.0985 17 6 0.9900 -5.5654 -10.5107 18 7 -0.1708 -6.0588 -10.1343 19 14 1.8556 -6.2572 -12.0145 20 1 3.1364 -5.5354 -12.2241 21 1 2.1292 -7.7019 -11.8073 22 1 0.9891 -6.0836 -13.2080 23 7 2.0184 -0.6906 1.1962 24 6 1.7559 -1.9868 1.5279 25 6 2.3799 -2.2586 2.6921 26 6 3.0440 -1.0846 3.0988 27 6 2.8055 -0.1417 2.1647 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1489 0.5385 -2.5435 32 1 3.2855 -0.9400 -3.6506 33 1 1.8326 -1.9681 -3.6508 34 1 0.5960 -0.2188 -4.9004 35 1 2.0494 0.8088 -4.8995 36 1 4.2563 -1.1120 -6.2488 37 1 3.4237 -0.7041 -7.7682 38 1 3.6366 0.5362 -6.5094 39 1 2.0690 -1.8918 -8.6876 40 1 2.9080 -3.0788 -7.6604 41 1 -0.5773 -6.7810 -10.6385 42 1 1.1539 -2.6773 0.9559 43 1 2.3687 -3.2018 3.2183 44 1 3.6355 -0.9622 3.9941 45 1 3.1740 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737721261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = -37.201024 kcal Electronic energy + Delta-G solvation = -26007.618625 eV Core-core repulsion = 22151.848553 eV Total energy + Delta-G solvation = -3855.770072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35465 -41.03814 -40.44178 -37.22071 -35.81961 -35.21561 -34.60326 -32.00803 -30.45105 -29.69796 -29.35067 -27.71609 -27.45650 -25.68203 -24.03444 -22.18856 -21.38289 -20.93965 -20.43691 -19.56934 -18.85199 -18.22702 -17.92859 -17.43645 -16.90591 -16.82053 -16.62743 -16.39416 -15.75197 -15.48540 -15.38156 -14.78109 -14.52244 -14.50719 -14.44371 -14.30893 -14.23790 -13.59918 -13.46858 -13.30947 -13.23548 -13.16860 -13.12454 -13.03961 -12.98112 -12.92470 -12.66584 -12.62602 -12.36634 -11.71653 -11.21310 -11.17580 -10.94987 -10.31660 -10.28651 -9.84022 -9.54142 -9.02609 -8.69385 -8.36647 -6.14933 1.15756 1.27162 1.35692 1.40217 1.44119 1.50889 1.55864 1.77228 2.02268 2.16919 2.25258 2.38206 2.97762 3.24114 3.45523 3.66390 3.74813 3.78662 3.80490 3.99858 4.10824 4.19053 4.27066 4.37322 4.39648 4.47292 4.54072 4.60870 4.66849 4.70783 4.73840 4.79174 4.85679 4.95309 5.07352 5.15646 5.38932 5.40321 5.42895 5.51493 6.09120 6.16689 6.18927 6.24951 6.31938 6.52888 7.03674 7.04847 7.08551 8.72830 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.001857 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.053451 B =15071.102268 C =15578.633473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 H 0.167 0.833 4 C 0.497 3.503 5 O -0.572 6.572 6 N -0.702 5.702 7 C 0.113 3.887 8 C 0.112 3.888 9 N -0.609 5.609 10 C 0.069 3.931 11 C 0.530 3.470 12 O -0.560 6.560 13 C -0.125 4.125 14 S -0.155 6.155 15 C -0.545 4.545 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.273 1.273 23 N -0.438 5.438 24 C -0.008 4.008 25 C -0.228 4.228 26 C -0.220 4.220 27 C -0.015 4.015 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.423 0.577 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.271 0.729 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.148 0.852 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 23.129 19.441 31.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 H 0.184 0.816 4 C 0.282 3.718 5 O -0.450 6.450 6 N -0.356 5.356 7 C -0.013 4.013 8 C -0.011 4.011 9 N -0.343 5.343 10 C -0.073 4.073 11 C 0.318 3.682 12 O -0.438 6.438 13 C -0.276 4.276 14 S 0.072 5.928 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.179 1.179 21 H -0.201 1.201 22 H -0.198 1.198 23 N -0.114 5.114 24 C -0.138 4.138 25 C -0.252 4.252 26 C -0.244 4.244 27 C -0.144 4.144 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.110 0.890 31 H 0.261 0.739 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.162 0.838 43 H 0.153 0.847 44 H 0.166 0.834 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.933 22.045 19.889 30.278 hybrid contribution 1.167 -0.720 -1.442 1.990 sum 7.100 21.325 18.447 29.077 Atomic orbital electron populations 1.22182 0.89483 1.03631 1.06109 1.21539 0.97954 0.98351 0.80667 0.81588 1.21287 0.80034 0.84606 0.85868 1.90800 1.39279 1.27875 1.87033 1.45556 1.53529 1.32456 1.04089 1.21538 0.99420 0.95799 0.84503 1.21666 1.00915 0.96969 0.81547 1.47715 1.22903 1.35333 1.28379 1.22173 0.82631 1.03111 0.99340 1.20178 0.83832 0.79663 0.84512 1.90689 1.24224 1.65039 1.63873 1.23389 1.03855 1.01587 0.98788 1.85581 1.29992 1.41188 1.36019 1.23228 1.09348 1.23140 1.13535 0.89841 1.26144 0.95691 0.95900 1.01509 1.70190 1.17664 1.26083 1.40850 0.84898 0.78499 0.77914 0.76594 1.17904 1.20108 1.19805 1.43916 1.39864 1.10158 1.17511 1.21690 1.06425 0.86831 0.98845 1.21128 1.05308 1.00170 0.98635 1.21162 1.07102 0.93762 1.02391 1.22352 1.00324 1.01031 0.90651 0.87274 0.93215 0.88963 0.73853 0.91171 0.95287 0.90225 0.84843 0.91816 0.90470 0.87097 0.86949 0.87787 0.92001 0.83778 0.84708 0.83411 0.78786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.13 71.98 0.66 -0.61 16 2 C 0.12 1.41 3.36 44.25 0.15 1.56 16 3 H 0.17 0.51 8.06 -2.39 -0.02 0.49 16 4 C 0.50 9.61 7.11 87.65 0.62 10.23 16 5 O -0.57 -18.01 15.47 -3.01 -0.05 -18.05 16 6 N -0.70 -9.75 5.45 -463.07 -2.52 -12.27 16 7 C 0.11 2.30 6.00 86.38 0.52 2.82 16 8 C 0.11 1.88 5.57 86.38 0.48 2.36 16 9 N -0.61 -14.09 2.87 -846.75 -2.43 -16.52 16 10 C 0.07 1.01 10.29 127.77 1.31 2.32 16 11 C 0.53 19.05 7.69 87.66 0.67 19.73 16 12 O -0.56 -25.22 15.44 -3.04 -0.05 -25.26 16 13 C -0.13 -4.90 4.71 71.24 0.34 -4.57 16 14 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 15 C -0.54 -31.06 9.50 67.95 0.65 -30.41 16 16 H 0.08 4.41 7.80 -2.90 -0.02 4.38 16 17 C 0.01 0.70 5.49 84.86 0.47 1.16 16 18 N -0.91 -56.14 13.22 21.65 0.29 -55.85 16 19 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 23 N -0.44 -8.13 2.40 -505.89 -1.21 -9.34 16 24 C -0.01 -0.19 9.57 83.21 0.80 0.60 16 25 C -0.23 -5.36 10.86 22.14 0.24 -5.12 16 26 C -0.22 -4.37 10.86 22.14 0.24 -4.13 16 27 C -0.02 -0.25 11.39 83.21 0.95 0.70 16 28 H 0.11 0.28 7.56 -2.39 -0.02 0.26 16 29 H 0.05 0.67 7.91 -2.39 -0.02 0.65 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.42 2.08 7.89 -92.71 -0.73 1.35 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.60 7.42 -2.39 -0.02 1.58 16 35 H 0.13 0.91 7.89 -2.39 -0.02 0.89 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.19 6.44 -2.39 -0.02 1.18 16 38 H 0.11 0.77 7.89 -2.38 -0.02 0.75 16 39 H 0.11 3.89 7.40 -2.40 -0.02 3.87 16 40 H 0.10 3.77 8.11 -2.40 -0.02 3.75 16 41 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 42 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 43 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -91.69 395.32 3.24 -88.45 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.26 Total: 16.38 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 8.09 Total: -3.35 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.88 Total: -93.99 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.09 Total: -43.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -91.69 3.24 -88.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737721261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.247 kcal (2) G-P(sol) polarization free energy of solvation -91.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds