Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36934 * 120.00304 * 2 1 4 4 H 1.08003 * 120.00067 * 153.30006 * 3 2 1 5 5 C 1.38813 * 120.00002 * 333.29642 * 3 2 1 6 6 N 1.31621 * 119.99783 * 359.88953 * 5 3 2 7 7 Si 1.86798 * 120.00129 * 179.88363 * 5 3 2 8 8 H 1.48501 * 109.47141 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47084 * 120.00221 * 7 5 3 10 10 H 1.48505 * 109.47357 * 240.00415 * 7 5 3 11 11 C 1.46505 * 119.99791 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.47001 * 90.00016 * 11 2 1 13 13 N 1.46495 * 109.46973 * 179.97438 * 12 11 2 14 14 C 1.46498 * 120.00184 * 269.99949 * 13 12 11 15 15 C 1.34777 * 120.00376 * 90.00122 * 13 12 11 16 16 O 1.21695 * 119.99787 * 2.93115 * 15 13 12 17 17 C 1.46677 * 120.00285 * 182.93741 * 15 13 12 18 18 C 1.35669 * 126.12917 * 187.80118 * 17 15 13 19 19 N 1.30937 * 114.19374 * 179.97438 * 18 17 15 20 20 C 1.29438 * 117.36039 * 359.97438 * 19 18 17 21 21 C 1.50699 * 124.80067 * 180.02562 * 20 19 18 22 22 H 1.09006 * 110.32764 * 197.22147 * 21 20 19 23 23 C 1.54476 * 110.37431 * 74.97483 * 21 20 19 24 24 C 1.54513 * 104.06094 * 217.18874 * 23 21 20 25 25 C 1.54475 * 104.06403 * 359.97438 * 24 23 21 26 26 O 1.44423 * 110.37329 * 319.58869 * 21 20 19 27 27 S 1.70947 * 110.39203 * 359.72560 * 20 19 18 28 28 H 1.09004 * 109.47293 * 83.45890 * 1 2 3 29 29 H 1.09003 * 109.46896 * 323.46043 * 1 2 3 30 30 H 1.09002 * 109.47202 * 203.46217 * 1 2 3 31 31 H 0.97006 * 119.99862 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47008 * 209.99530 * 11 2 1 33 33 H 1.08997 * 109.47444 * 330.00211 * 11 2 1 34 34 H 1.08995 * 109.47215 * 299.99917 * 12 11 2 35 35 H 1.08997 * 109.46862 * 59.99839 * 12 11 2 36 36 H 1.08996 * 109.47570 * 94.31111 * 14 13 12 37 37 H 1.09004 * 109.47641 * 214.31577 * 14 13 12 38 38 H 1.09003 * 109.47146 * 334.31213 * 14 13 12 39 39 H 1.08003 * 122.90377 * 0.02890 * 18 17 15 40 40 H 1.08995 * 110.51068 * 335.82897 * 23 21 20 41 41 H 1.09002 * 110.51197 * 98.40697 * 23 21 20 42 42 H 1.08997 * 110.51116 * 118.64583 * 24 23 21 43 43 H 1.09001 * 110.51030 * 241.21334 * 24 23 21 44 44 H 1.08996 * 110.37567 * 142.81160 * 25 24 23 45 45 H 1.09001 * 110.37017 * 265.04018 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1433 1.2357 0.4203 5 6 1.5667 2.3239 -0.5402 6 7 0.3566 2.2627 -1.0544 7 14 2.4995 3.9423 -0.5373 8 1 3.8295 3.7460 0.0933 9 1 2.6792 4.4126 -1.9343 10 1 1.7315 4.9550 0.2310 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 7 3.1854 -2.9795 -1.4412 14 6 4.6503 -2.9790 -1.4414 15 6 2.5120 -4.1470 -1.4406 16 8 1.2962 -4.1482 -1.4943 17 6 3.2445 -5.4161 -1.3749 18 6 2.7111 -6.6557 -1.5151 19 7 3.5814 -7.6288 -1.4147 20 6 4.8157 -7.3033 -1.1999 21 6 5.9514 -8.2835 -1.0572 22 1 6.8105 -7.8022 -0.5898 23 6 6.3418 -8.8587 -2.4367 24 6 6.6891 -10.3354 -2.1430 25 6 6.4681 -10.4774 -0.6208 26 8 5.5324 -9.4295 -0.2847 27 16 4.9763 -5.6038 -1.1092 28 1 -0.3634 0.1171 -1.0210 29 1 -0.3633 0.8257 0.6119 30 1 -0.3634 -0.9427 0.4092 31 1 -0.0509 3.0580 -1.4316 32 1 3.1499 -1.1382 0.5143 33 1 1.6084 -2.0282 0.5147 34 1 1.5000 -1.8416 -1.9556 35 1 3.0415 -0.9517 -1.9559 36 1 5.0139 -3.0556 -0.4167 37 1 5.0140 -3.8280 -2.0204 38 1 5.0133 -2.0530 -1.8874 39 1 1.6597 -6.8251 -1.6948 40 1 5.5023 -8.7942 -3.1289 41 1 7.2081 -8.3330 -2.8384 42 1 6.0214 -11.0008 -2.6901 43 1 7.7279 -10.5419 -2.4008 44 1 6.0431 -11.4539 -0.3885 45 1 7.4074 -10.3363 -0.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753865146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = 5.926097 kcal Electronic energy + Delta-G solvation = -26724.030663 eV Core-core repulsion = 22870.130724 eV Total energy + Delta-G solvation = -3853.899940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.47217 -39.77853 -38.85512 -36.10027 -34.98993 -32.65684 -32.03055 -31.38917 -29.57884 -28.34379 -26.80760 -25.89286 -25.59543 -23.94592 -22.99803 -21.78755 -21.27996 -20.24548 -19.07753 -18.48163 -17.08590 -16.72928 -16.70932 -16.36499 -15.82998 -15.48091 -15.43229 -14.91950 -14.63961 -14.33736 -14.11952 -13.71460 -13.59787 -13.47447 -13.15828 -13.12181 -12.63928 -12.40490 -12.25250 -12.13930 -12.07733 -11.78895 -11.65143 -11.31551 -11.17542 -10.92654 -10.83192 -10.51382 -10.31438 -10.15988 -10.02148 -9.92878 -9.81365 -9.66715 -9.55333 -9.14865 -8.63170 -8.46744 -6.72842 -5.74472 -3.24805 0.05215 0.93053 1.36821 2.34511 3.05419 3.20941 3.34951 3.41407 3.43443 3.48757 3.72862 4.18400 4.32394 4.41359 4.46646 4.52684 4.59508 4.77851 4.88230 4.96418 5.13316 5.15699 5.24849 5.25227 5.34839 5.40795 5.50431 5.51805 5.58749 5.68762 5.78372 5.93974 6.17612 6.31038 6.32869 6.48177 6.64445 6.86965 6.97511 7.41459 7.47400 7.53172 7.77401 7.86186 8.20108 8.40549 9.23078 9.84105 10.35863 11.29171 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.002165 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.184503 B =12927.573534 C =13449.489110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.599 5.599 3 C -0.258 4.258 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.603 5.603 14 C 0.065 3.935 15 C 0.586 3.414 16 O -0.521 6.521 17 C -0.280 4.280 18 C 0.113 3.887 19 N -0.455 5.455 20 C 0.016 3.984 21 C 0.153 3.847 22 H 0.092 0.908 23 C -0.143 4.143 24 C -0.152 4.152 25 C 0.042 3.958 26 O -0.350 6.350 27 S 0.207 5.793 28 H 0.032 0.968 29 H 0.044 0.956 30 H -0.003 1.003 31 H 0.253 0.747 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.188 0.812 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.998 -23.017 -2.758 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.322 5.322 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.015 3.985 12 C -0.030 4.030 13 N -0.336 5.336 14 C -0.081 4.081 15 C 0.371 3.629 16 O -0.398 6.398 17 C -0.405 4.405 18 C -0.045 4.045 19 N -0.169 5.169 20 C -0.258 4.258 21 C 0.092 3.908 22 H 0.109 0.891 23 C -0.182 4.182 24 C -0.190 4.190 25 C -0.035 4.035 26 O -0.268 6.268 27 S 0.466 5.534 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.205 0.795 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.791 -22.749 -2.553 28.390 hybrid contribution -0.222 0.762 -0.443 0.909 sum 16.570 -21.987 -2.996 27.694 Atomic orbital electron populations 1.20880 0.82101 0.95262 0.99768 1.43912 1.02150 1.00363 1.85812 1.19242 1.00330 0.86470 1.32739 0.91402 1.25230 0.96953 0.98897 0.98267 1.70085 1.13925 1.28039 1.42908 0.86178 0.79285 0.83775 0.77293 1.20305 1.21582 1.21634 1.21124 0.95966 0.88537 0.92860 1.22795 0.96957 0.80836 1.02392 1.47957 1.06524 1.06875 1.72203 1.22032 0.80664 1.02973 1.02425 1.16789 0.86711 0.81737 0.77625 1.90865 1.12389 1.86411 1.50156 1.26010 0.96424 0.99939 1.18093 1.22215 1.01040 0.85094 0.96130 1.66189 1.00312 1.35828 1.14607 1.27540 0.96095 0.99401 1.02780 1.21393 0.90699 0.86265 0.92484 0.89061 1.22991 1.02749 0.95849 0.96647 1.22929 1.02642 0.96483 0.96951 1.23469 0.93419 0.92381 0.94218 1.89303 1.52020 1.20502 1.65001 1.84307 1.04984 0.99968 1.64190 0.94974 0.93718 0.98490 0.93677 0.93898 0.94193 0.90056 0.90092 0.91524 0.91534 0.88638 0.79490 0.89823 0.89736 0.90260 0.90170 0.88632 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.25 8.99 59.84 0.54 4.79 16 2 N -0.60 -15.35 2.93 -181.11 -0.53 -15.88 16 3 C -0.26 -6.99 9.65 -15.06 -0.15 -7.14 16 4 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 5 C 0.01 0.14 5.33 -17.43 -0.09 0.05 16 6 N -0.90 -26.29 10.33 55.49 0.57 -25.72 16 7 Si 0.90 21.44 29.55 -169.99 -5.02 16.41 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.14 3.05 6.03 -4.04 -0.02 3.03 16 12 C 0.09 1.79 5.80 -4.04 -0.02 1.77 16 13 N -0.60 -9.41 2.87 -183.13 -0.53 -9.93 16 14 C 0.06 0.71 8.97 59.85 0.54 1.24 16 15 C 0.59 9.80 7.64 -12.85 -0.10 9.70 16 16 O -0.52 -10.65 16.44 5.19 0.09 -10.56 16 17 C -0.28 -3.83 6.23 -37.10 -0.23 -4.06 16 18 C 0.11 1.53 11.10 -18.85 -0.21 1.32 16 19 N -0.46 -6.06 10.47 -11.50 -0.12 -6.18 16 20 C 0.02 0.18 6.24 -13.29 -0.08 0.09 16 21 C 0.15 1.30 3.80 -27.11 -0.10 1.20 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 23 C -0.14 -0.93 6.62 -25.16 -0.17 -1.10 16 24 C -0.15 -0.80 7.09 -25.16 -0.18 -0.98 16 25 C 0.04 0.27 7.63 37.93 0.29 0.56 16 26 O -0.35 -3.67 11.30 -35.23 -0.40 -4.07 16 27 S 0.21 2.02 18.13 -107.50 -1.95 0.07 16 28 H 0.03 0.89 7.27 -51.93 -0.38 0.51 16 29 H 0.04 1.22 7.33 -51.93 -0.38 0.84 16 30 H 0.00 -0.08 7.82 -51.93 -0.41 -0.49 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 33 H 0.04 0.86 7.85 -51.93 -0.41 0.45 16 34 H 0.08 1.77 7.38 -51.93 -0.38 1.38 16 35 H 0.08 1.55 7.86 -51.93 -0.41 1.14 16 36 H 0.07 0.65 7.78 -51.93 -0.40 0.25 16 37 H 0.07 0.62 4.69 -24.44 -0.11 0.51 16 38 H 0.10 0.95 7.84 -51.93 -0.41 0.54 16 39 H 0.19 2.42 8.06 -52.48 -0.42 1.99 16 40 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -33.99 379.24 -8.79 -42.78 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.62 Total: -3.11 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 0.01 Total: 10.48 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.60 Total: -57.71 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.31 Total: -14.63 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.95 Total: 0.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.99 -8.79 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753865146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.703 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds