Wall clock time and date at job start Sat Apr 11 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36934 * 120.00304 * 2 1 4 4 H 1.08003 * 120.00067 * 153.30006 * 3 2 1 5 5 C 1.38813 * 120.00002 * 333.29642 * 3 2 1 6 6 N 1.31621 * 119.99783 * 359.88953 * 5 3 2 7 7 Si 1.86798 * 120.00129 * 179.88363 * 5 3 2 8 8 H 1.48501 * 109.47141 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47084 * 120.00221 * 7 5 3 10 10 H 1.48505 * 109.47357 * 240.00415 * 7 5 3 11 11 C 1.46505 * 119.99791 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.47001 * 90.00016 * 11 2 1 13 13 N 1.46495 * 109.46973 * 179.97438 * 12 11 2 14 14 C 1.46498 * 120.00184 * 269.99949 * 13 12 11 15 15 C 1.34777 * 120.00376 * 90.00122 * 13 12 11 16 16 O 1.21695 * 119.99787 * 2.93115 * 15 13 12 17 17 C 1.46677 * 120.00285 * 182.93741 * 15 13 12 18 18 C 1.35669 * 126.12917 * 187.80118 * 17 15 13 19 19 N 1.30937 * 114.19374 * 179.97438 * 18 17 15 20 20 C 1.29438 * 117.36039 * 359.97438 * 19 18 17 21 21 C 1.50699 * 124.80067 * 180.02562 * 20 19 18 22 22 H 1.09006 * 110.32764 * 197.22147 * 21 20 19 23 23 C 1.54476 * 110.37431 * 74.97483 * 21 20 19 24 24 C 1.54513 * 104.06094 * 217.18874 * 23 21 20 25 25 C 1.54475 * 104.06403 * 359.97438 * 24 23 21 26 26 O 1.44423 * 110.37329 * 319.58869 * 21 20 19 27 27 S 1.70947 * 110.39203 * 359.72560 * 20 19 18 28 28 H 1.09004 * 109.47293 * 83.45890 * 1 2 3 29 29 H 1.09003 * 109.46896 * 323.46043 * 1 2 3 30 30 H 1.09002 * 109.47202 * 203.46217 * 1 2 3 31 31 H 0.97006 * 119.99862 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47008 * 209.99530 * 11 2 1 33 33 H 1.08997 * 109.47444 * 330.00211 * 11 2 1 34 34 H 1.08995 * 109.47215 * 299.99917 * 12 11 2 35 35 H 1.08997 * 109.46862 * 59.99839 * 12 11 2 36 36 H 1.08996 * 109.47570 * 94.31111 * 14 13 12 37 37 H 1.09004 * 109.47641 * 214.31577 * 14 13 12 38 38 H 1.09003 * 109.47146 * 334.31213 * 14 13 12 39 39 H 1.08003 * 122.90377 * 0.02890 * 18 17 15 40 40 H 1.08995 * 110.51068 * 335.82897 * 23 21 20 41 41 H 1.09002 * 110.51197 * 98.40697 * 23 21 20 42 42 H 1.08997 * 110.51116 * 118.64583 * 24 23 21 43 43 H 1.09001 * 110.51030 * 241.21334 * 24 23 21 44 44 H 1.08996 * 110.37567 * 142.81160 * 25 24 23 45 45 H 1.09001 * 110.37017 * 265.04018 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1433 1.2357 0.4203 5 6 1.5667 2.3239 -0.5402 6 7 0.3566 2.2627 -1.0544 7 14 2.4995 3.9423 -0.5373 8 1 3.8295 3.7460 0.0933 9 1 2.6792 4.4126 -1.9343 10 1 1.7315 4.9550 0.2310 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 7 3.1854 -2.9795 -1.4412 14 6 4.6503 -2.9790 -1.4414 15 6 2.5120 -4.1470 -1.4406 16 8 1.2962 -4.1482 -1.4943 17 6 3.2445 -5.4161 -1.3749 18 6 2.7111 -6.6557 -1.5151 19 7 3.5814 -7.6288 -1.4147 20 6 4.8157 -7.3033 -1.1999 21 6 5.9514 -8.2835 -1.0572 22 1 6.8105 -7.8022 -0.5898 23 6 6.3418 -8.8587 -2.4367 24 6 6.6891 -10.3354 -2.1430 25 6 6.4681 -10.4774 -0.6208 26 8 5.5324 -9.4295 -0.2847 27 16 4.9763 -5.6038 -1.1092 28 1 -0.3634 0.1171 -1.0210 29 1 -0.3633 0.8257 0.6119 30 1 -0.3634 -0.9427 0.4092 31 1 -0.0509 3.0580 -1.4316 32 1 3.1499 -1.1382 0.5143 33 1 1.6084 -2.0282 0.5147 34 1 1.5000 -1.8416 -1.9556 35 1 3.0415 -0.9517 -1.9559 36 1 5.0139 -3.0556 -0.4167 37 1 5.0140 -3.8280 -2.0204 38 1 5.0133 -2.0530 -1.8874 39 1 1.6597 -6.8251 -1.6948 40 1 5.5023 -8.7942 -3.1289 41 1 7.2081 -8.3330 -2.8384 42 1 6.0214 -11.0008 -2.6901 43 1 7.7279 -10.5419 -2.4008 44 1 6.0431 -11.4539 -0.3885 45 1 7.4074 -10.3363 -0.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753865146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:09 Heat of formation + Delta-G solvation = -17.168022 kcal Electronic energy + Delta-G solvation = -26725.032099 eV Core-core repulsion = 22870.130724 eV Total energy + Delta-G solvation = -3854.901376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45039 -40.77842 -39.73421 -37.83179 -36.56096 -33.65012 -33.20525 -32.56707 -30.81330 -29.55921 -28.07823 -27.76700 -26.61317 -25.36792 -23.87703 -22.81633 -22.25548 -21.75138 -19.98506 -19.58557 -18.78924 -17.91713 -17.75682 -17.17017 -17.02442 -16.60049 -16.50207 -16.13547 -15.87489 -15.53286 -15.32218 -15.04710 -14.69262 -14.64128 -14.31440 -14.17459 -14.08459 -13.97749 -13.63527 -13.08421 -12.83032 -12.78033 -12.73909 -12.67027 -12.58691 -12.48479 -12.24065 -12.06119 -11.95814 -11.61634 -11.60052 -11.29728 -10.88675 -10.67445 -10.61928 -10.50199 -10.18052 -9.73745 -8.76862 -7.82989 -5.37114 -0.91104 0.03344 0.44664 1.30296 1.49096 1.49567 1.60626 1.80569 2.03033 2.51591 2.81125 3.07237 3.32197 3.40247 3.67080 3.72607 3.74788 3.94388 3.99874 4.08954 4.14957 4.21700 4.26839 4.34868 4.38267 4.55500 4.64857 4.69787 4.70443 4.80516 4.84587 4.89323 4.94481 4.98740 5.06552 5.09184 5.16381 5.31077 5.40224 5.65220 5.70163 5.79921 6.18378 6.32815 6.58897 6.91631 7.13333 7.81189 8.30493 9.20924 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029838 B = 0.002165 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.184503 B =12927.573534 C =13449.489110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.617 5.617 3 C -0.264 4.264 4 H 0.080 0.920 5 C -0.053 4.053 6 N -0.941 5.941 7 Si 0.975 3.025 8 H -0.259 1.259 9 H -0.291 1.291 10 H -0.296 1.296 11 C 0.148 3.852 12 C 0.113 3.887 13 N -0.602 5.602 14 C 0.055 3.945 15 C 0.584 3.416 16 O -0.572 6.572 17 C -0.316 4.316 18 C 0.112 3.888 19 N -0.486 5.486 20 C 0.013 3.987 21 C 0.144 3.856 22 H 0.123 0.877 23 C -0.142 4.142 24 C -0.148 4.148 25 C 0.036 3.964 26 O -0.387 6.387 27 S 0.298 5.702 28 H 0.006 0.994 29 H 0.021 0.979 30 H 0.013 0.987 31 H 0.248 0.752 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.179 0.821 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.481 -23.701 -2.451 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.340 5.340 3 C -0.393 4.393 4 H 0.098 0.902 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.803 3.197 8 H -0.183 1.183 9 H -0.218 1.218 10 H -0.223 1.223 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.333 5.333 14 C -0.088 4.088 15 C 0.372 3.628 16 O -0.453 6.453 17 C -0.440 4.440 18 C -0.047 4.047 19 N -0.201 5.201 20 C -0.260 4.260 21 C 0.083 3.917 22 H 0.140 0.860 23 C -0.181 4.181 24 C -0.185 4.185 25 C -0.041 4.041 26 O -0.306 6.306 27 S 0.557 5.443 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.196 0.804 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.369 -23.470 -2.236 31.819 hybrid contribution -1.518 0.809 -0.495 1.790 sum 19.851 -22.661 -2.730 30.249 Atomic orbital electron populations 1.20564 0.83061 0.95014 0.97785 1.44106 1.01998 1.01687 1.86252 1.19612 1.00547 0.87069 1.32098 0.90204 1.26053 0.97784 1.02503 0.98439 1.70277 1.15566 1.28609 1.44276 0.85082 0.78585 0.79125 0.76912 1.18285 1.21797 1.22276 1.21155 0.96077 0.86553 0.94128 1.22180 0.96107 0.82541 1.00316 1.47871 1.08435 1.05268 1.71770 1.22374 0.77410 1.04795 1.04265 1.17172 0.86328 0.82826 0.76506 1.90829 1.14782 1.87305 1.52405 1.25713 0.99561 0.98208 1.20558 1.22202 1.01180 0.85508 0.95772 1.66254 1.01371 1.36026 1.16437 1.28229 0.96097 1.01210 1.00474 1.21803 0.90256 0.85855 0.93814 0.85986 1.23028 1.03017 0.96935 0.95119 1.22936 1.04066 0.95459 0.96065 1.23701 0.93625 0.91558 0.95186 1.89262 1.53787 1.21887 1.65712 1.83755 1.00411 0.97966 1.62124 0.97568 0.95982 0.96877 0.94253 0.91900 0.94970 0.93488 0.89734 0.89496 0.89724 0.86949 0.80363 0.91943 0.86903 0.91021 0.87518 0.88464 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.69 8.99 127.77 1.15 10.84 16 2 N -0.62 -31.82 2.93 -726.92 -2.13 -33.94 16 3 C -0.26 -14.14 9.65 84.03 0.81 -13.32 16 4 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 5 C -0.05 -2.92 5.33 84.86 0.45 -2.47 16 6 N -0.94 -56.02 10.33 21.65 0.22 -55.79 16 7 Si 0.98 43.89 29.55 68.60 2.03 45.92 16 8 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 9 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 11 C 0.15 6.23 6.03 86.38 0.52 6.75 16 12 C 0.11 4.34 5.80 86.38 0.50 4.84 16 13 N -0.60 -18.21 2.87 -851.51 -2.45 -20.66 16 14 C 0.06 1.03 8.97 127.77 1.15 2.18 16 15 C 0.58 19.74 7.64 86.45 0.66 20.40 16 16 O -0.57 -24.61 16.44 -4.33 -0.07 -24.68 16 17 C -0.32 -8.45 6.23 23.88 0.15 -8.30 16 18 C 0.11 3.12 11.10 84.23 0.93 4.06 16 19 N -0.49 -12.78 10.47 -190.30 -1.99 -14.77 16 20 C 0.01 0.26 6.24 88.46 0.55 0.81 16 21 C 0.14 2.05 3.80 30.35 0.12 2.16 16 22 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 23 C -0.14 -1.45 6.62 31.61 0.21 -1.24 16 24 C -0.15 -1.15 7.09 31.61 0.22 -0.92 16 25 C 0.04 0.37 7.63 72.48 0.55 0.92 16 26 O -0.39 -7.45 11.30 -148.98 -1.68 -9.14 16 27 S 0.30 4.88 18.13 -56.49 -1.02 3.86 16 28 H 0.01 0.35 7.27 -2.38 -0.02 0.33 16 29 H 0.02 1.23 7.33 -2.39 -0.02 1.22 16 30 H 0.01 0.63 7.82 -2.39 -0.02 0.61 16 31 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 32 H 0.06 2.38 8.04 -2.39 -0.02 2.37 16 33 H 0.03 1.39 7.85 -2.39 -0.02 1.37 16 34 H 0.05 2.13 7.38 -2.39 -0.02 2.11 16 35 H 0.08 3.17 7.86 -2.39 -0.02 3.15 16 36 H 0.09 1.33 7.78 -2.39 -0.02 1.31 16 37 H 0.09 1.26 4.69 -19.86 -0.09 1.17 16 38 H 0.11 1.80 7.84 -2.39 -0.02 1.79 16 39 H 0.18 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.06 0.92 7.86 -2.39 -0.02 0.90 16 41 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -76.99 379.24 1.79 -75.20 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.91 Total: 7.31 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 7.98 Total: 26.69 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -6.34 Total: -125.16 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.75 Total: -33.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.02 Total: 3.86 kcal Total: -76.99 1.79 -75.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753865146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.032 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds