Wall clock time and date at job start Sat Apr 11 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47023 * 2 1 4 4 C 1.34779 * 120.00156 * 83.89231 * 3 2 1 5 5 O 1.21626 * 119.99632 * 184.96423 * 4 3 2 6 6 C 1.47257 * 119.99876 * 4.96091 * 4 3 2 7 7 C 1.46685 * 126.94528 * 342.65982 * 6 4 3 8 8 C 1.34487 * 106.33442 * 180.15401 * 7 6 4 9 9 N 1.36446 * 108.85612 * 359.60222 * 8 7 6 10 10 H 0.96994 * 124.85329 * 180.25955 * 9 8 7 11 11 C 1.34661 * 110.29647 * 0.26545 * 9 8 7 12 12 C 1.46503 * 119.99614 * 263.88334 * 3 2 1 13 13 H 1.09006 * 109.46604 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47041 * 60.00667 * 12 3 2 15 15 C 1.52992 * 109.47413 * 300.00549 * 12 3 2 16 16 N 1.46506 * 109.47000 * 304.99558 * 15 12 3 17 17 C 1.34777 * 119.99809 * 180.02562 * 16 15 12 18 18 O 1.21279 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99810 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76200 * 99.99866 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00179 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00054 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00119 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99725 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46951 * 90.00353 * 25 23 21 27 27 H 1.48496 * 109.47112 * 209.99925 * 25 23 21 28 28 H 1.48494 * 109.47337 * 330.00498 * 25 23 21 29 29 H 1.09003 * 109.47117 * 305.18066 * 1 2 3 30 30 H 1.09007 * 109.46887 * 65.18003 * 1 2 3 31 31 H 1.08993 * 109.47472 * 185.17884 * 1 2 3 32 32 H 1.08994 * 109.46973 * 239.99491 * 2 1 3 33 33 H 1.09000 * 109.46564 * 119.99836 * 2 1 3 34 34 H 1.08000 * 126.83536 * 0.04350 * 7 6 4 35 35 H 1.07998 * 125.57033 * 179.87077 * 8 7 6 36 36 H 1.08003 * 125.79851 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47008 * 299.99812 * 14 12 3 38 38 H 1.09006 * 109.47101 * 59.99351 * 14 12 3 39 39 H 1.09001 * 109.47315 * 179.97438 * 14 12 3 40 40 H 1.08997 * 109.47764 * 65.00114 * 15 12 3 41 41 H 1.09005 * 109.47211 * 185.00663 * 15 12 3 42 42 H 0.97000 * 120.00358 * 0.02562 * 16 15 12 43 43 H 1.09003 * 109.46970 * 299.99722 * 19 17 16 44 44 H 1.08997 * 109.47462 * 59.99809 * 19 17 16 45 45 H 0.96997 * 120.00275 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1258 2.0580 1.1606 5 8 2.4445 3.2317 1.1527 6 6 1.8575 1.3763 2.4380 7 6 1.1395 0.1115 2.6285 8 6 1.1322 -0.1235 3.9527 9 7 1.7941 0.8889 4.5839 10 1 1.9297 0.9497 5.5424 11 6 2.2322 1.7918 3.6860 12 6 2.3899 2.0267 -1.2616 13 1 2.7275 3.0440 -1.0635 14 6 1.1761 2.0638 -2.1923 15 6 3.5182 1.2356 -1.9263 16 7 4.6359 1.0981 -0.9892 17 6 5.7485 0.4339 -1.3601 18 8 5.8245 -0.0495 -2.4698 19 6 6.8980 0.2919 -0.3960 20 16 8.2329 -0.6438 -1.1824 21 6 9.4103 -0.6576 0.1284 22 1 9.1807 -0.1725 1.0656 23 6 10.6329 -1.2919 -0.0435 24 7 11.5122 -1.3027 0.9359 25 14 11.0297 -2.1316 -1.6643 26 1 11.6860 -1.1611 -2.5769 27 1 11.9438 -3.2757 -1.4182 28 1 9.7749 -2.6253 -2.2863 29 1 -0.3633 0.5921 0.8400 30 1 -0.3633 0.4314 -0.9328 31 1 -0.3634 -1.0234 0.0928 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.7019 -0.5070 1.8588 35 1 0.6804 -0.9767 4.4368 36 1 2.7851 2.6915 3.9129 37 1 0.8388 1.0464 -2.3903 38 1 0.3722 2.6274 -1.7187 39 1 1.4524 2.5445 -3.1308 40 1 3.1538 0.2469 -2.2048 41 1 3.8552 1.7633 -2.8186 42 1 4.5753 1.4850 -0.1018 43 1 7.2623 1.2806 -0.1169 44 1 6.5610 -0.2363 0.4959 45 1 12.3664 -1.7462 0.8160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756847016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:25 Heat of formation + Delta-G solvation = -8.467372 kcal Electronic energy + Delta-G solvation = -27333.767216 eV Core-core repulsion = 23479.243128 eV Total energy + Delta-G solvation = -3854.524087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56674 -40.04007 -38.91979 -36.85431 -34.69051 -32.72857 -32.41164 -30.71248 -30.52156 -29.45984 -29.23014 -25.98598 -25.50132 -23.95728 -23.50392 -21.23861 -20.62884 -20.32040 -19.33732 -18.44692 -17.81171 -16.92509 -16.36484 -16.31100 -15.81396 -15.20604 -15.08721 -14.94067 -14.81629 -14.33834 -14.14364 -13.87719 -13.71431 -13.51452 -13.17682 -13.04340 -12.99078 -12.78438 -12.76534 -12.48212 -12.30957 -12.06957 -11.94053 -11.71207 -11.27665 -11.23734 -11.08418 -10.98578 -10.56969 -9.97842 -9.83488 -9.47663 -9.07112 -8.98706 -8.93785 -8.88274 -8.59240 -8.46646 -6.88250 -6.26514 -3.97630 1.57018 2.14436 2.67900 2.82454 3.02951 3.05855 3.31516 3.34391 3.38889 3.52517 3.72446 4.35525 4.41603 4.60831 4.68421 4.70592 4.79310 4.85722 4.91632 5.00423 5.05454 5.12602 5.13810 5.19701 5.31790 5.34073 5.39743 5.47922 5.50120 5.57194 5.71452 5.72426 5.79273 5.82693 5.90152 6.01015 6.07905 6.36839 6.42614 6.60276 6.63579 7.10944 7.27601 7.68730 7.96728 8.12997 8.44545 8.55793 9.19813 10.82855 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002937 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.833097 B = 9531.090427 C =10884.487012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 N -0.600 5.600 4 C 0.592 3.408 5 O -0.552 6.552 6 C -0.234 4.234 7 C -0.188 4.188 8 C -0.020 4.020 9 N -0.553 5.553 10 H 0.418 0.582 11 C 0.077 3.923 12 C 0.125 3.875 13 H 0.108 0.892 14 C -0.157 4.157 15 C 0.112 3.888 16 N -0.731 5.731 17 C 0.531 3.469 18 O -0.522 6.522 19 C -0.123 4.123 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.087 0.913 23 C 0.096 3.904 24 N -0.882 5.882 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.176 0.824 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.811 4.005 4.628 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.035 4.035 3 N -0.332 5.332 4 C 0.383 3.617 5 O -0.431 6.431 6 C -0.244 4.244 7 C -0.211 4.211 8 C -0.147 4.147 9 N -0.147 5.147 10 H 0.254 0.746 11 C -0.060 4.060 12 C 0.021 3.979 13 H 0.126 0.874 14 C -0.216 4.216 15 C -0.013 4.013 16 N -0.385 5.385 17 C 0.317 3.683 18 O -0.397 6.397 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.518 5.518 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.183 0.817 35 H 0.185 0.815 36 H 0.193 0.807 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.234 0.766 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -27.337 3.732 2.951 27.748 hybrid contribution 0.330 0.272 1.671 1.725 sum -27.007 4.004 4.622 27.691 Atomic orbital electron populations 1.22482 0.95997 1.02372 1.03117 1.22057 0.94164 0.82711 1.04526 1.47759 1.65401 1.14215 1.05867 1.17478 0.75941 0.85364 0.82888 1.90781 1.49316 1.15672 1.87320 1.20264 1.12086 0.99597 0.92466 1.22951 1.05090 0.97383 0.95692 1.21915 1.04118 0.95288 0.93418 1.41691 1.44070 1.19187 1.09753 0.74570 1.21848 1.00654 0.95349 0.88170 1.21350 0.94279 0.98592 0.83666 0.87360 1.22119 0.97394 1.02740 0.99315 1.21673 0.86071 1.00729 0.92811 1.45873 1.16213 1.58352 1.18062 1.20242 0.82726 0.77169 0.88150 1.90689 1.80726 1.46807 1.21490 1.23267 0.97426 1.05300 1.01377 1.84738 1.12602 1.70195 1.23948 1.22333 1.01899 1.41871 1.00719 0.89447 1.24711 0.94822 0.94769 0.96990 1.69938 1.07497 1.42491 1.31903 0.86731 0.80931 0.80233 0.83936 1.19207 1.19978 1.15905 0.91414 0.91902 0.91436 0.90237 0.88322 0.81665 0.81476 0.80665 0.91766 0.91722 0.91069 0.91274 0.90437 0.76639 0.88599 0.88648 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 8.27 37.16 0.31 -0.79 16 2 C 0.09 0.69 4.84 -4.04 -0.02 0.67 16 3 N -0.60 -5.86 1.87 -167.43 -0.31 -6.18 16 4 C 0.59 7.08 7.30 -12.59 -0.09 6.98 16 5 O -0.55 -8.31 16.30 5.25 0.09 -8.22 16 6 C -0.23 -2.39 5.99 -103.35 -0.62 -3.01 16 7 C -0.19 -1.48 7.62 -37.50 -0.29 -1.77 16 8 C -0.02 -0.12 11.89 -16.82 -0.20 -0.32 16 9 N -0.55 -3.35 5.90 -12.85 -0.08 -3.43 16 10 H 0.42 1.23 8.96 -40.82 -0.37 0.87 16 11 C 0.08 0.67 11.74 -16.84 -0.20 0.47 16 12 C 0.12 1.21 2.79 -67.93 -0.19 1.03 16 13 H 0.11 1.23 6.91 -51.93 -0.36 0.88 16 14 C -0.16 -1.16 8.36 37.16 0.31 -0.85 16 15 C 0.11 1.30 4.94 -4.04 -0.02 1.28 16 16 N -0.73 -10.33 5.39 -60.29 -0.32 -10.66 16 17 C 0.53 9.87 7.85 -10.99 -0.09 9.79 16 18 O -0.52 -11.45 15.86 5.56 0.09 -11.36 16 19 C -0.12 -2.50 6.16 36.01 0.22 -2.28 16 20 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 21 C -0.52 -15.27 10.04 30.94 0.31 -14.95 16 22 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 23 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 24 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 25 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 29 H 0.07 0.47 6.61 -51.93 -0.34 0.12 16 30 H 0.06 0.38 6.21 -51.92 -0.32 0.06 16 31 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.08 0.63 6.54 -51.93 -0.34 0.29 16 33 H 0.10 0.79 4.77 -51.93 -0.25 0.55 16 34 H 0.17 1.06 3.72 -52.49 -0.20 0.86 16 35 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.18 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.80 6.87 -51.93 -0.36 0.44 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.40 5.33 7.87 -40.82 -0.32 5.01 16 43 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 44 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -37.31 376.09 -7.61 -44.92 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.15 Total: 4.73 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.66 Total: -1.02 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.06 Total: -46.37 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.17 Total: -19.59 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.31 -7.61 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756847016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.456 kcal (2) G-P(sol) polarization free energy of solvation -37.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds