Wall clock time and date at job start Sat Apr 11 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47023 * 2 1 4 4 C 1.34779 * 120.00156 * 83.89231 * 3 2 1 5 5 O 1.21626 * 119.99632 * 184.96423 * 4 3 2 6 6 C 1.47257 * 119.99876 * 4.96091 * 4 3 2 7 7 C 1.46685 * 126.94528 * 342.65982 * 6 4 3 8 8 C 1.34487 * 106.33442 * 180.15401 * 7 6 4 9 9 N 1.36446 * 108.85612 * 359.60222 * 8 7 6 10 10 H 0.96994 * 124.85329 * 180.25955 * 9 8 7 11 11 C 1.34661 * 110.29647 * 0.26545 * 9 8 7 12 12 C 1.46503 * 119.99614 * 263.88334 * 3 2 1 13 13 H 1.09006 * 109.46604 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47041 * 60.00667 * 12 3 2 15 15 C 1.52992 * 109.47413 * 300.00549 * 12 3 2 16 16 N 1.46506 * 109.47000 * 304.99558 * 15 12 3 17 17 C 1.34777 * 119.99809 * 180.02562 * 16 15 12 18 18 O 1.21279 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99810 * 180.02562 * 17 16 15 20 20 S 1.81004 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76200 * 99.99866 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00179 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00054 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00119 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99725 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46951 * 90.00353 * 25 23 21 27 27 H 1.48496 * 109.47112 * 209.99925 * 25 23 21 28 28 H 1.48494 * 109.47337 * 330.00498 * 25 23 21 29 29 H 1.09003 * 109.47117 * 305.18066 * 1 2 3 30 30 H 1.09007 * 109.46887 * 65.18003 * 1 2 3 31 31 H 1.08993 * 109.47472 * 185.17884 * 1 2 3 32 32 H 1.08994 * 109.46973 * 239.99491 * 2 1 3 33 33 H 1.09000 * 109.46564 * 119.99836 * 2 1 3 34 34 H 1.08000 * 126.83536 * 0.04350 * 7 6 4 35 35 H 1.07998 * 125.57033 * 179.87077 * 8 7 6 36 36 H 1.08003 * 125.79851 * 179.97438 * 11 9 8 37 37 H 1.08998 * 109.47008 * 299.99812 * 14 12 3 38 38 H 1.09006 * 109.47101 * 59.99351 * 14 12 3 39 39 H 1.09001 * 109.47315 * 179.97438 * 14 12 3 40 40 H 1.08997 * 109.47764 * 65.00114 * 15 12 3 41 41 H 1.09005 * 109.47211 * 185.00663 * 15 12 3 42 42 H 0.97000 * 120.00358 * 0.02562 * 16 15 12 43 43 H 1.09003 * 109.46970 * 299.99722 * 19 17 16 44 44 H 1.08997 * 109.47462 * 59.99809 * 19 17 16 45 45 H 0.96997 * 120.00275 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1258 2.0580 1.1606 5 8 2.4445 3.2317 1.1527 6 6 1.8575 1.3763 2.4380 7 6 1.1395 0.1115 2.6285 8 6 1.1322 -0.1235 3.9527 9 7 1.7941 0.8889 4.5839 10 1 1.9297 0.9497 5.5424 11 6 2.2322 1.7918 3.6860 12 6 2.3899 2.0267 -1.2616 13 1 2.7275 3.0440 -1.0635 14 6 1.1761 2.0638 -2.1923 15 6 3.5182 1.2356 -1.9263 16 7 4.6359 1.0981 -0.9892 17 6 5.7485 0.4339 -1.3601 18 8 5.8245 -0.0495 -2.4698 19 6 6.8980 0.2919 -0.3960 20 16 8.2329 -0.6438 -1.1824 21 6 9.4103 -0.6576 0.1284 22 1 9.1807 -0.1725 1.0656 23 6 10.6329 -1.2919 -0.0435 24 7 11.5122 -1.3027 0.9359 25 14 11.0297 -2.1316 -1.6643 26 1 11.6860 -1.1611 -2.5769 27 1 11.9438 -3.2757 -1.4182 28 1 9.7749 -2.6253 -2.2863 29 1 -0.3633 0.5921 0.8400 30 1 -0.3633 0.4314 -0.9328 31 1 -0.3634 -1.0234 0.0928 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 0.7019 -0.5070 1.8588 35 1 0.6804 -0.9767 4.4368 36 1 2.7851 2.6915 3.9129 37 1 0.8388 1.0464 -2.3903 38 1 0.3722 2.6274 -1.7187 39 1 1.4524 2.5445 -3.1308 40 1 3.1538 0.2469 -2.2048 41 1 3.8552 1.7633 -2.8186 42 1 4.5753 1.4850 -0.1018 43 1 7.2623 1.2806 -0.1169 44 1 6.5610 -0.2363 0.4959 45 1 12.3664 -1.7462 0.8160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756847016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:24 Heat of formation + Delta-G solvation = -34.816116 kcal Electronic energy + Delta-G solvation = -27334.909783 eV Core-core repulsion = 23479.243128 eV Total energy + Delta-G solvation = -3855.666655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19764 -41.00896 -40.18644 -37.79518 -35.74772 -34.68493 -33.70051 -31.46380 -31.24347 -30.80739 -29.81238 -27.90886 -26.87300 -24.70538 -24.16684 -21.81339 -21.75800 -21.40827 -20.02174 -19.81945 -19.10364 -17.90508 -17.75551 -17.47703 -17.08344 -16.76699 -16.43264 -16.00461 -15.72624 -15.48786 -15.06040 -14.98092 -14.89896 -14.74421 -14.27117 -14.20504 -13.96802 -13.77989 -13.48651 -13.39148 -13.35216 -13.12066 -13.00382 -12.95394 -12.70833 -12.59551 -12.38373 -11.92293 -11.86273 -11.83060 -11.17857 -11.05430 -10.87102 -10.56714 -10.17023 -9.78563 -9.62146 -9.19847 -9.00975 -8.52373 -6.23673 0.82826 0.96721 1.31780 1.46107 1.52828 1.54949 1.60709 1.95262 2.22244 2.26526 2.51714 2.54175 2.70056 2.85808 3.60221 3.78005 3.91240 4.07908 4.10747 4.15520 4.20462 4.24247 4.41793 4.42136 4.46558 4.56860 4.57432 4.62769 4.67989 4.80107 4.89453 4.98358 5.05490 5.08424 5.18523 5.22838 5.36701 5.48731 5.67456 5.69615 5.82958 6.02353 6.10002 6.34802 6.46304 6.70827 6.92321 7.11412 7.27787 8.60359 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.002937 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.833097 B = 9531.090427 C =10884.487012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 N -0.596 5.596 4 C 0.585 3.415 5 O -0.595 6.595 6 C -0.265 4.265 7 C -0.200 4.200 8 C -0.012 4.012 9 N -0.540 5.540 10 H 0.433 0.567 11 C 0.065 3.935 12 C 0.130 3.870 13 H 0.090 0.910 14 C -0.150 4.150 15 C 0.113 3.887 16 N -0.711 5.711 17 C 0.538 3.462 18 O -0.556 6.556 19 C -0.113 4.113 20 S -0.164 6.164 21 C -0.533 4.533 22 H 0.058 0.942 23 C 0.046 3.954 24 N -0.918 5.918 25 Si 0.916 3.084 26 H -0.262 1.262 27 H -0.257 1.257 28 H -0.235 1.235 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.179 0.821 35 H 0.201 0.799 36 H 0.177 0.823 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.405 0.595 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.806 2.803 4.279 30.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.037 4.037 3 N -0.327 5.327 4 C 0.378 3.622 5 O -0.478 6.478 6 C -0.275 4.275 7 C -0.223 4.223 8 C -0.140 4.140 9 N -0.135 5.135 10 H 0.272 0.728 11 C -0.073 4.073 12 C 0.026 3.974 13 H 0.108 0.892 14 C -0.208 4.208 15 C -0.012 4.012 16 N -0.363 5.363 17 C 0.323 3.677 18 O -0.435 6.435 19 C -0.264 4.264 20 S 0.062 5.938 21 C -0.680 4.680 22 H 0.077 0.923 23 C -0.159 4.159 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.181 1.181 28 H -0.159 1.159 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.196 0.804 35 H 0.218 0.782 36 H 0.195 0.805 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.240 0.760 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.374 2.522 2.640 29.600 hybrid contribution 0.833 0.716 1.903 2.197 sum -28.542 3.238 4.543 29.082 Atomic orbital electron populations 1.22404 0.94308 1.03557 1.02874 1.22217 0.95520 0.81374 1.04569 1.47831 1.64694 1.14863 1.05311 1.17840 0.75381 0.85015 0.83958 1.90746 1.51583 1.17473 1.87968 1.20374 1.13905 1.01070 0.92131 1.23135 1.05458 0.96788 0.96916 1.22472 1.02826 0.95592 0.93138 1.41729 1.43018 1.18418 1.10379 0.72778 1.21969 1.00919 0.95956 0.88493 1.21283 0.94707 0.97218 0.84150 0.89170 1.22071 0.95981 1.03723 0.99012 1.21873 0.85435 1.01500 0.92357 1.45727 1.15543 1.56403 1.18646 1.19841 0.83164 0.77512 0.87140 1.90680 1.81432 1.48762 1.22599 1.23255 0.96321 1.04926 1.01863 1.84587 1.13899 1.71737 1.23558 1.22472 1.03234 1.41557 1.00761 0.92328 1.25582 0.94667 0.95341 1.00319 1.70015 1.08206 1.43466 1.33862 0.85850 0.80924 0.79748 0.79742 1.18699 1.18129 1.15856 0.92233 0.91679 0.89363 0.90042 0.88357 0.80449 0.78207 0.80548 0.90444 0.91783 0.89988 0.90472 0.90330 0.75978 0.87689 0.87347 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.27 71.98 0.60 -1.10 16 2 C 0.08 1.18 4.84 86.38 0.42 1.60 16 3 N -0.60 -11.19 1.87 -801.88 -1.50 -12.69 16 4 C 0.59 14.08 7.30 86.61 0.63 14.71 16 5 O -0.59 -18.55 16.30 -4.11 -0.07 -18.62 16 6 C -0.26 -5.29 5.99 -19.04 -0.11 -5.40 16 7 C -0.20 -2.82 7.62 23.62 0.18 -2.64 16 8 C -0.01 -0.12 11.89 83.12 0.99 0.87 16 9 N -0.54 -5.62 5.90 -194.55 -1.15 -6.77 16 10 H 0.43 1.70 8.96 -92.71 -0.83 0.87 16 11 C 0.07 1.10 11.74 83.91 0.98 2.09 16 12 C 0.13 2.43 2.79 44.99 0.13 2.55 16 13 H 0.09 2.07 6.91 -2.38 -0.02 2.05 16 14 C -0.15 -1.94 8.36 71.98 0.60 -1.34 16 15 C 0.11 2.46 4.94 86.38 0.43 2.89 16 16 N -0.71 -19.42 5.39 -463.06 -2.50 -21.91 16 17 C 0.54 19.52 7.85 87.66 0.69 20.21 16 18 O -0.56 -23.93 15.86 -3.03 -0.05 -23.98 16 19 C -0.11 -4.53 6.16 71.24 0.44 -4.09 16 20 S -0.16 -8.48 18.55 -56.49 -1.05 -9.52 16 21 C -0.53 -31.67 10.04 67.96 0.68 -30.98 16 22 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 23 C 0.05 2.75 5.50 84.86 0.47 3.22 16 24 N -0.92 -56.46 13.97 21.65 0.30 -56.16 16 25 Si 0.92 45.26 27.74 68.60 1.90 47.16 16 26 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.23 -11.52 6.74 99.48 0.67 -10.85 16 29 H 0.06 0.72 6.61 -2.39 -0.02 0.70 16 30 H 0.06 0.62 6.21 -2.38 -0.01 0.61 16 31 H 0.09 0.52 8.12 -2.39 -0.02 0.50 16 32 H 0.08 1.11 6.54 -2.39 -0.02 1.10 16 33 H 0.10 1.42 4.77 -2.39 -0.01 1.41 16 34 H 0.18 1.88 3.72 -2.91 -0.01 1.87 16 35 H 0.20 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.08 0.82 6.56 -2.39 -0.02 0.80 16 38 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.63 6.87 -2.39 -0.02 1.62 16 41 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.41 10.55 7.87 -92.71 -0.73 9.82 16 43 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 44 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 45 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -81.43 376.09 2.46 -78.97 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.55 Total: 20.95 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 7.11 Total: 2.57 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -4.84 Total: -97.53 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.12 Total: -42.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.05 Total: -9.52 kcal Total: -81.43 2.46 -78.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756847016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.151 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds