Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35233 * 126.07184 * 2 1 4 4 C 1.40410 * 107.86918 * 180.13918 * 3 2 1 5 5 N 1.40153 * 125.97598 * 179.82759 * 4 3 2 6 6 C 1.34780 * 119.99759 * 359.71250 * 5 4 3 7 7 O 1.21295 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99864 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.46990 * 180.02562 * 8 6 5 10 10 C 1.35108 * 125.68613 * 125.00185 * 9 8 6 11 11 N 1.36838 * 107.18141 * 180.02562 * 10 9 8 12 12 C 1.36482 * 132.57179 * 179.97438 * 11 10 9 13 13 C 1.34948 * 120.61123 * 179.97438 * 12 11 10 14 14 C 1.40477 * 120.29984 * 0.03985 * 13 12 11 15 15 C 1.36025 * 119.69114 * 359.97438 * 14 13 12 16 16 C 1.37081 * 106.99516 * 0.02562 * 11 10 9 17 17 N 1.32556 * 108.04019 * 359.97438 * 16 11 10 18 18 N 1.31217 * 108.04798 * 359.56057 * 4 3 2 19 19 N 1.34968 * 126.06545 * 179.65468 * 2 1 3 20 20 C 1.46496 * 125.97713 * 359.97438 * 19 2 1 21 21 C 1.50705 * 109.47304 * 270.01635 * 20 19 2 22 22 H 1.08006 * 119.99498 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00527 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99508 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00237 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47252 * 89.99669 * 25 23 21 27 27 H 1.48499 * 109.47458 * 210.00035 * 25 23 21 28 28 H 1.48501 * 109.47348 * 329.99982 * 25 23 21 29 29 H 1.09000 * 109.46879 * 270.34851 * 1 2 3 30 30 H 1.09003 * 109.46769 * 30.34265 * 1 2 3 31 31 H 1.08996 * 109.47221 * 150.34588 * 1 2 3 32 32 H 1.08001 * 126.06436 * 359.96593 * 3 2 1 33 33 H 0.96997 * 120.00003 * 179.71302 * 5 4 3 34 34 H 1.08999 * 109.46706 * 60.00311 * 8 6 5 35 35 H 1.09004 * 109.47466 * 300.00276 * 8 6 5 36 36 H 1.08005 * 126.41030 * 0.02562 * 10 9 8 37 37 H 1.08003 * 119.69297 * 0.03648 * 12 11 10 38 38 H 1.07998 * 119.85026 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.15010 * 180.25917 * 14 13 12 40 40 H 1.08000 * 120.33361 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.47607 * 30.01341 * 20 19 2 42 42 H 1.09000 * 109.47157 * 150.01862 * 20 19 2 43 43 H 0.96996 * 119.99532 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 -0.0032 5 7 4.7735 1.4747 -0.0077 6 6 4.6368 2.8155 -0.0151 7 8 3.5302 3.3123 -0.0174 8 6 5.8587 3.6976 -0.0193 9 6 5.4344 5.1436 -0.0268 10 6 5.8163 6.0816 0.8675 11 7 5.2115 7.2546 0.5059 12 6 5.2378 8.5101 1.0407 13 6 4.5339 9.5128 0.4749 14 6 3.7620 9.2762 -0.6747 15 6 3.7268 8.0295 -1.2177 16 6 4.4670 6.9928 -0.6149 17 7 4.6177 5.7111 -0.9176 18 7 3.6336 -0.6577 0.0045 19 7 2.3016 -1.0910 0.0066 20 6 1.8499 -2.4845 0.0155 21 6 1.6952 -2.9534 1.4394 22 1 1.9113 -2.2803 2.2560 23 6 1.2778 -4.2414 1.6997 24 7 1.0142 -5.0608 0.7052 25 14 1.0867 -4.8227 3.4645 26 1 -0.2960 -4.5455 3.9300 27 1 1.3498 -6.2824 3.5362 28 1 2.0543 -4.1022 4.3305 29 1 -0.3633 0.0063 1.0277 30 1 -0.3633 0.8869 -0.5192 31 1 -0.3633 -0.8930 -0.5084 32 1 1.9720 2.1210 -0.0005 33 1 5.6584 1.0774 -0.0055 34 1 6.4544 3.4887 -0.9079 35 1 6.4537 3.4984 0.8720 36 1 6.4756 5.9334 1.7100 37 1 5.8282 8.7030 1.9242 38 1 4.5639 10.5017 0.9081 39 1 3.2029 10.0814 -1.1279 40 1 3.1372 7.8361 -2.1017 41 1 0.8912 -2.5591 -0.4977 42 1 2.5845 -3.1079 -0.4944 43 1 0.7209 -5.9670 0.8883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271141663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = 113.482987 kcal Electronic energy + Delta-G solvation = -27382.223289 eV Core-core repulsion = 23429.836166 eV Total energy + Delta-G solvation = -3952.387123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.70301 -42.27122 -40.53646 -38.27421 -36.27573 -35.27971 -34.54530 -33.38803 -32.77568 -32.45555 -30.20240 -29.10056 -28.24902 -27.87892 -25.14722 -24.27714 -23.59675 -23.12250 -21.54716 -21.22560 -20.55280 -18.81840 -18.68914 -17.95185 -17.64422 -17.59911 -17.10376 -16.75704 -16.54557 -16.45886 -16.09346 -15.73989 -15.41465 -15.02486 -14.92049 -14.64991 -14.33469 -13.98811 -13.82044 -13.79874 -13.57016 -13.40143 -13.15004 -13.02718 -12.84382 -12.66560 -12.56815 -12.45399 -12.25225 -12.07787 -11.94258 -11.54611 -11.32794 -10.99511 -10.79448 -10.72737 -9.63706 -9.57556 -9.12273 -8.74364 -8.32846 -6.50666 -0.09776 0.38862 0.94753 1.33043 1.37627 1.38569 1.46873 1.51185 1.75480 1.90907 2.24708 2.31955 2.46659 2.66737 2.96489 3.23549 3.51692 3.68850 3.88374 3.96448 4.06725 4.16385 4.22870 4.30789 4.37301 4.43434 4.55795 4.59522 4.68783 4.81024 4.86742 4.88136 4.97333 5.00950 5.01328 5.14306 5.18464 5.25878 5.32717 5.53396 5.63168 5.67191 5.80655 5.96477 6.21834 6.25550 6.34718 6.61620 6.99889 7.03070 7.20033 7.22761 8.73119 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.001972 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.790599 B =14193.198655 C =14364.922039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.086 3.914 3 C -0.301 4.301 4 C 0.276 3.724 5 N -0.625 5.625 6 C 0.518 3.482 7 O -0.538 6.538 8 C -0.041 4.041 9 C 0.043 3.957 10 C -0.087 4.087 11 N -0.369 5.369 12 C 0.043 3.957 13 C -0.142 4.142 14 C -0.087 4.087 15 C -0.115 4.115 16 C 0.194 3.806 17 N -0.520 5.520 18 N -0.357 5.357 19 N -0.343 5.343 20 C 0.275 3.725 21 C -0.552 4.552 22 H 0.049 0.951 23 C 0.021 3.979 24 N -0.918 5.918 25 Si 0.973 3.027 26 H -0.265 1.265 27 H -0.273 1.273 28 H -0.276 1.276 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.427 0.573 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.222 0.778 37 H 0.198 0.802 38 H 0.190 0.810 39 H 0.172 0.828 40 H 0.146 0.854 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 30.828 1.184 32.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 C -0.332 4.332 4 C 0.022 3.978 5 N -0.276 5.276 6 C 0.305 3.695 7 O -0.412 6.412 8 C -0.081 4.081 9 C -0.090 4.090 10 C -0.218 4.218 11 N -0.041 5.041 12 C -0.078 4.078 13 C -0.162 4.162 14 C -0.111 4.111 15 C -0.135 4.135 16 C -0.050 4.050 17 N -0.240 5.240 18 N -0.188 5.188 19 N -0.125 5.125 20 C 0.156 3.844 21 C -0.590 4.590 22 H 0.067 0.933 23 C -0.180 4.180 24 N -0.556 5.556 25 Si 0.797 3.203 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.201 1.201 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.265 0.735 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.239 0.761 37 H 0.215 0.785 38 H 0.207 0.793 39 H 0.190 0.810 40 H 0.164 0.836 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.433 29.429 0.516 31.228 hybrid contribution 0.056 -0.196 1.079 1.098 sum 10.488 29.233 1.595 31.099 Atomic orbital electron populations 1.20452 0.85470 1.04077 1.03907 1.21711 0.96609 0.86559 0.99615 1.21379 0.90395 0.99577 1.21875 1.19348 0.88954 0.89193 1.00305 1.42668 1.06826 1.05063 1.73076 1.21372 0.92511 0.80775 0.74799 1.90668 1.28811 1.74094 1.47616 1.20049 0.93884 0.85346 1.08841 1.20442 0.98320 0.96041 0.94156 1.22877 1.09148 0.83529 1.06248 1.43037 1.31127 1.09099 1.20789 1.22401 1.02941 0.81166 1.01265 1.21368 0.97367 1.00616 0.96831 1.21498 0.97931 0.96176 0.95486 1.20524 1.00178 0.90869 1.01936 1.21392 1.00002 0.93390 0.90209 1.70573 1.20049 1.04165 1.29200 1.77164 0.99893 1.09914 1.31834 1.48769 1.01815 1.07435 1.54506 1.19251 0.94898 0.72382 0.97864 1.21420 1.47577 0.98376 0.91663 0.93312 1.25757 0.93944 0.95855 1.02399 1.70007 1.45040 1.07389 1.33168 0.85330 0.78945 0.77581 0.78468 1.18979 1.19798 1.20053 0.89790 0.87953 0.91133 0.82392 0.73482 0.84692 0.82459 0.76148 0.78526 0.79311 0.81015 0.83613 0.93127 0.95683 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.93 10.11 71.24 0.72 -2.21 16 2 C 0.09 3.86 6.92 41.38 0.29 4.14 16 3 C -0.30 -13.39 9.52 22.11 0.21 -13.18 16 4 C 0.28 11.88 8.11 133.33 1.08 12.96 16 5 N -0.63 -19.72 5.45 -307.51 -1.68 -21.39 16 6 C 0.52 15.64 7.79 87.66 0.68 16.33 16 7 O -0.54 -21.40 12.69 -3.08 -0.04 -21.44 16 8 C -0.04 -0.76 6.26 29.10 0.18 -0.58 16 9 C 0.04 1.05 5.85 41.58 0.24 1.30 16 10 C -0.09 -1.57 11.63 83.19 0.97 -0.60 16 11 N -0.37 -7.05 2.95 -352.15 -1.04 -8.09 16 12 C 0.04 0.45 10.95 83.21 0.91 1.36 16 13 C -0.14 -1.04 9.99 22.06 0.22 -0.82 16 14 C -0.09 -0.93 10.07 22.30 0.22 -0.71 16 15 C -0.11 -2.21 10.11 22.42 0.23 -1.99 16 16 C 0.19 4.99 7.81 134.11 1.05 6.03 16 17 N -0.52 -16.26 10.67 -182.40 -1.95 -18.21 16 18 N -0.36 -17.48 12.59 -54.45 -0.69 -18.17 16 19 N -0.34 -17.37 3.59 -338.45 -1.22 -18.59 16 20 C 0.27 15.01 5.99 85.64 0.51 15.53 16 21 C -0.55 -31.68 9.39 25.60 0.24 -31.44 16 22 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 23 C 0.02 1.19 5.46 84.65 0.46 1.65 16 24 N -0.92 -52.62 13.29 21.45 0.28 -52.34 16 25 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 26 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 29 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.07 2.57 7.07 -2.39 -0.02 2.55 16 32 H 0.16 7.04 5.92 -2.91 -0.02 7.02 16 33 H 0.43 10.07 8.82 -92.71 -0.82 9.26 16 34 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.16 1.43 8.10 -2.38 -0.02 1.42 16 36 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.20 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.19 -0.18 8.06 -2.91 -0.02 -0.21 16 39 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.05 2.74 7.04 -2.39 -0.02 2.72 16 42 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -88.03 373.94 4.18 -83.86 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.24 Total: 20.86 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 8.22 Total: 7.77 kcal Atomic # 7 Polarization: -130.51 SS G_CDS: -6.28 Total: -136.78 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.04 Total: -21.44 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -88.03 4.18 -83.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271141663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.342 kcal (2) G-P(sol) polarization free energy of solvation -88.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds