Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35239 * 126.06907 * 2 1 4 4 C 1.40408 * 107.86803 * 179.84883 * 3 2 1 5 5 N 1.40179 * 125.97405 * 180.16572 * 4 3 2 6 6 C 1.34775 * 120.00022 * 0.27327 * 5 4 3 7 7 O 1.21590 * 120.00366 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00126 * 179.97438 * 6 5 4 9 9 C 1.39959 * 120.00303 * 175.38957 * 8 6 5 10 10 C 1.38991 * 119.99797 * 214.84012 * 9 8 6 11 11 C 1.38221 * 120.23856 * 179.72401 * 10 9 8 12 12 C 1.50693 * 119.88522 * 180.29262 * 11 10 9 13 13 C 1.38010 * 120.22572 * 0.54229 * 11 10 9 14 14 C 1.39638 * 119.98594 * 359.73076 * 13 11 10 15 15 C 1.43200 * 120.11490 * 179.97438 * 14 13 11 16 16 N 8.37966 * 96.02164 * 10.73411 * 2 1 3 17 17 C 1.38577 * 119.99495 * 35.10465 * 9 8 6 18 18 N 1.31211 * 108.04917 * 0.41913 * 4 3 2 19 19 N 1.34960 * 126.06693 * 180.30773 * 2 1 3 20 20 C 1.46498 * 125.98200 * 359.96627 * 19 2 1 21 21 C 1.50703 * 109.46954 * 89.99835 * 20 19 2 22 22 H 1.08003 * 120.00160 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99771 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00138 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99966 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46743 * 90.00133 * 25 23 21 27 27 H 1.48497 * 109.47014 * 210.00027 * 25 23 21 28 28 H 1.48500 * 109.47046 * 330.00387 * 25 23 21 29 29 H 1.08997 * 109.47195 * 269.69040 * 1 2 3 30 30 H 1.09003 * 109.47312 * 149.69123 * 1 2 3 31 31 H 1.08997 * 109.46903 * 29.68932 * 1 2 3 32 32 H 1.08003 * 126.06546 * 359.97438 * 3 2 1 33 33 H 0.97002 * 119.99740 * 180.26610 * 5 4 3 34 34 H 0.97001 * 119.99623 * 355.38956 * 8 6 5 35 35 H 1.08005 * 119.88035 * 359.97438 * 10 9 8 36 36 H 1.09004 * 109.47561 * 270.24689 * 12 11 10 37 37 H 1.09003 * 109.47616 * 30.25392 * 12 11 10 38 38 H 1.09011 * 109.46836 * 150.25263 * 12 11 10 39 39 H 1.07999 * 120.00772 * 179.74921 * 13 11 10 40 40 H 1.07999 * 120.11458 * 359.97438 * 17 9 8 41 41 H 1.09000 * 109.47414 * 209.99857 * 20 19 2 42 42 H 1.09003 * 109.46731 * 330.00164 * 20 19 2 43 43 H 0.97006 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6546 0.0035 5 7 4.7737 1.4751 0.0080 6 6 4.6369 2.8158 0.0147 7 8 3.5277 3.3138 0.0165 8 7 5.7297 3.6047 0.0195 9 6 5.5900 4.9944 -0.0709 10 6 6.5354 5.7444 -0.7606 11 6 6.3994 7.1165 -0.8578 12 6 7.4255 7.9211 -1.6131 13 6 5.3297 7.7526 -0.2613 14 6 4.3774 7.0089 0.4387 15 6 3.2667 7.6662 1.0592 16 7 2.3861 8.1876 1.5521 17 6 4.5121 5.6230 0.5318 18 7 3.6337 -0.6575 -0.0036 19 7 2.3016 -1.0909 -0.0059 20 6 1.8501 -2.4846 -0.0126 21 6 1.6946 -2.9552 -1.4358 22 1 1.9109 -2.2836 -2.2535 23 6 1.2762 -4.2433 -1.6940 24 7 1.0123 -5.0611 -0.6984 25 14 1.0827 -4.8266 -3.4581 26 1 2.3632 -5.4132 -3.9287 27 1 0.0131 -5.8546 -3.5250 28 1 0.7180 -3.6757 -4.3228 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3634 -0.8872 -0.5186 31 1 -0.3633 0.8927 -0.5090 32 1 1.9720 2.1211 -0.0004 33 1 5.6586 1.0778 0.0063 34 1 6.6130 3.2093 0.0856 35 1 7.3772 5.2529 -1.2256 36 1 8.2204 8.2267 -0.9326 37 1 7.8465 7.3132 -2.4139 38 1 6.9519 8.8057 -2.0390 39 1 5.2290 8.8253 -0.3361 40 1 3.7786 5.0424 1.0714 41 1 2.5850 -3.1071 0.4977 42 1 0.8917 -2.5584 0.5013 43 1 0.7182 -5.9675 -0.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455960992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = 108.343321 kcal Electronic energy + Delta-G solvation = -27260.352528 eV Core-core repulsion = 23307.742532 eV Total energy + Delta-G solvation = -3952.609996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23863 -40.40268 -39.24499 -36.78931 -35.47391 -34.90070 -33.45817 -32.94278 -31.57285 -30.94915 -30.06009 -27.39227 -26.69768 -26.37300 -24.31051 -23.79309 -22.64116 -21.12476 -20.17135 -19.65346 -18.93802 -17.86245 -16.72570 -16.69581 -16.59393 -16.15276 -15.78822 -15.43433 -15.07576 -14.68594 -14.47137 -14.29292 -14.06516 -13.71316 -13.70286 -13.36950 -13.20122 -13.04887 -12.70944 -12.50080 -12.40214 -12.35054 -12.17503 -12.08401 -11.83980 -11.66515 -11.44437 -11.13845 -10.86555 -10.69343 -10.48316 -10.29874 -10.09317 -9.76854 -9.58650 -9.14156 -8.66900 -8.56945 -7.99216 -7.49469 -6.28028 -4.35863 0.41892 0.90657 2.05980 2.42511 2.46561 2.67603 2.97062 3.19915 3.26301 3.29908 3.39594 3.54078 3.61181 3.72298 4.10228 4.29080 4.35590 4.66437 4.70208 4.78509 4.96446 5.05588 5.19439 5.22636 5.28424 5.37668 5.53775 5.64525 5.76383 5.87962 5.95480 5.98176 6.03475 6.08328 6.11026 6.42599 6.44586 6.52766 6.57980 6.89837 6.96093 7.03343 7.25755 7.39385 7.64385 7.72437 7.86035 8.01173 8.30390 8.59618 8.72059 9.30702 10.79173 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.002124 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.326320 B =13179.248470 C =13902.658704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.288 4.288 4 C 0.277 3.723 5 N -0.636 5.636 6 C 0.713 3.287 7 O -0.547 6.547 8 N -0.684 5.684 9 C 0.176 3.824 10 C -0.118 4.118 11 C -0.068 4.068 12 C -0.114 4.114 13 C -0.091 4.091 14 C -0.006 4.006 15 C 0.258 3.742 16 N -0.416 5.416 17 C -0.078 4.078 18 N -0.320 5.320 19 N -0.316 5.316 20 C 0.258 3.742 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.409 0.591 34 H 0.411 0.589 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.154 0.846 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.833 22.202 0.613 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.024 3.976 5 N -0.285 5.285 6 C 0.412 3.588 7 O -0.421 6.421 8 N -0.332 5.332 9 C 0.080 3.920 10 C -0.140 4.140 11 C -0.069 4.069 12 C -0.171 4.171 13 C -0.112 4.112 14 C -0.010 4.010 15 C -0.058 4.058 16 N -0.091 5.091 17 C -0.101 4.101 18 N -0.150 5.150 19 N -0.098 5.098 20 C 0.141 3.859 21 C -0.575 4.575 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.196 1.196 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.244 0.756 34 H 0.247 0.753 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.171 0.829 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.045 21.995 1.418 25.118 hybrid contribution 0.760 -0.584 -1.123 1.476 sum 12.805 21.411 0.295 24.950 Atomic orbital electron populations 1.20387 0.87879 1.03925 1.02580 1.21067 0.94961 0.87077 1.00712 1.21227 0.89598 0.99885 1.21203 1.18603 0.86290 0.89298 1.03380 1.41273 1.08033 1.03315 1.75882 1.15569 0.84351 0.80697 0.78144 1.90900 1.23236 1.72964 1.54993 1.42467 1.09164 1.04148 1.77462 1.17158 0.96361 0.81556 0.96918 1.20985 1.00285 0.93660 0.99074 1.19525 0.96068 0.93089 0.98193 1.20807 0.97157 0.99593 0.99514 1.20997 0.93148 0.99963 0.97103 1.15767 0.91815 0.92180 1.01206 1.25604 0.93073 0.93479 0.93599 1.81249 1.10088 1.08699 1.09024 1.21392 0.98531 0.92191 0.97960 1.77249 1.00114 1.08170 1.29494 1.48999 1.00794 1.07830 1.52216 1.19703 0.96009 0.71263 0.98952 1.21320 1.46854 0.97995 0.91345 0.91732 1.24931 0.94655 0.96061 0.98146 1.69921 1.44856 1.06983 1.31145 0.86356 0.78021 0.78582 0.83738 1.20341 1.20865 1.19640 0.91045 0.89870 0.90578 0.82195 0.75606 0.75269 0.84813 0.90720 0.91086 0.91089 0.84964 0.82856 0.92982 0.92731 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.01 0.36 -1.16 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -5.72 9.52 -39.83 -0.38 -6.10 16 4 C 0.28 5.35 8.11 -154.37 -1.25 4.10 16 5 N -0.64 -8.85 5.45 -15.51 -0.08 -8.93 16 6 C 0.71 9.24 8.38 -86.92 -0.73 8.51 16 7 O -0.55 -8.90 10.90 5.29 0.06 -8.84 16 8 N -0.68 -5.70 5.34 -14.26 -0.08 -5.78 16 9 C 0.18 1.50 6.29 -83.74 -0.53 0.97 16 10 C -0.12 -0.72 9.61 -39.31 -0.38 -1.09 16 11 C -0.07 -0.38 5.87 -104.72 -0.61 -1.00 16 12 C -0.11 -0.37 10.00 36.00 0.36 -0.01 16 13 C -0.09 -0.61 9.40 -39.14 -0.37 -0.97 16 14 C -0.01 -0.05 5.73 -106.96 -0.61 -0.66 16 15 C 0.26 2.90 15.33 -22.48 -0.34 2.55 16 16 N -0.42 -5.62 18.54 41.83 0.78 -4.84 16 17 C -0.08 -0.79 8.40 -38.97 -0.33 -1.12 16 18 N -0.32 -7.09 12.59 31.44 0.40 -6.70 16 19 N -0.32 -7.31 3.59 -58.33 -0.21 -7.52 16 20 C 0.26 6.50 5.81 -5.19 -0.03 6.47 16 21 C -0.54 -14.55 9.39 -34.44 -0.32 -14.87 16 22 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 23 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 25 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.16 3.11 5.91 -52.48 -0.31 2.80 16 33 H 0.41 4.28 8.84 -40.82 -0.36 3.92 16 34 H 0.41 1.90 8.84 -40.82 -0.36 1.53 16 35 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 36 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 38 H 0.07 0.19 8.08 -51.92 -0.42 -0.23 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.15 1.90 6.22 -52.49 -0.33 1.57 16 41 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.05 1.36 7.65 -51.93 -0.40 0.97 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -33.70 380.80 -8.60 -42.30 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.08 Total: 4.11 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -5.83 Total: -1.37 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 1.54 Total: -57.78 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.06 Total: -8.84 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.70 -8.60 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455960992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.641 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds