Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46852 * 67.24551 * 3 2 1 5 5 C 1.36980 * 119.99996 * 274.93642 * 4 3 2 6 6 H 1.07992 * 119.99883 * 38.71229 * 5 4 3 7 7 C 1.38983 * 119.99797 * 218.71397 * 5 4 3 8 8 N 1.31404 * 119.99803 * 7.80161 * 7 5 4 9 9 Si 1.86791 * 119.99755 * 187.79815 * 7 5 4 10 10 H 1.48507 * 109.47227 * 60.00123 * 9 7 5 11 11 H 1.48493 * 109.47251 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47359 * 300.00524 * 9 7 5 13 13 C 1.34780 * 120.00015 * 94.94064 * 4 3 2 14 14 O 1.21629 * 119.99964 * 186.72940 * 13 4 3 15 15 C 1.47336 * 120.00181 * 6.72296 * 13 4 3 16 16 C 1.41364 * 126.41567 * 328.86483 * 15 13 4 17 17 N 1.30475 * 108.07091 * 179.71690 * 16 15 13 18 18 N 1.39933 * 108.92918 * 0.43888 * 17 16 15 19 19 C 1.40146 * 125.76385 * 179.80770 * 18 17 16 20 20 C 1.38845 * 120.07308 * 324.69601 * 19 18 17 21 21 C 1.38110 * 119.93623 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.06479 * 359.97438 * 21 20 19 23 23 C 1.38280 * 120.13521 * 0.02562 * 22 21 20 24 24 C 1.38106 * 120.06880 * 359.97438 * 23 22 21 25 25 C 1.34562 * 108.46482 * 359.55267 * 18 17 16 26 26 C 1.50696 * 126.31726 * 180.22205 * 25 18 17 27 27 O 1.42897 * 109.47102 * 89.99916 * 26 25 18 28 28 C 1.42901 * 114.00700 * 179.97438 * 27 26 25 29 29 H 4.40637 * 5.51275 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47145 * 307.24319 * 3 2 1 31 31 H 1.08997 * 109.46475 * 187.23884 * 3 2 1 32 32 H 0.97005 * 119.99521 * 184.76191 * 8 7 5 33 33 H 1.07998 * 125.96740 * 0.02562 * 16 15 13 34 34 H 1.08004 * 120.03015 * 0.04497 * 20 19 18 35 35 H 1.08001 * 119.97018 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.93050 * 179.75150 * 22 21 20 37 37 H 1.07997 * 119.96132 * 179.97438 * 23 22 21 38 38 H 1.08006 * 120.03775 * 180.02562 * 24 23 22 39 39 H 1.08997 * 109.47543 * 209.99660 * 26 25 18 40 40 H 1.09000 * 109.47313 * 329.99864 * 26 25 18 41 41 H 1.09002 * 109.47188 * 300.00493 * 28 27 26 42 42 H 1.08999 * 109.46403 * 59.99800 * 28 27 26 43 43 H 1.08994 * 109.47818 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.5334 -1.2737 5 6 3.2672 -1.8861 -1.4435 6 1 2.5299 -2.5572 -1.0285 7 6 4.3507 -2.3949 -2.1497 8 7 5.3257 -1.5965 -2.5220 9 14 4.4209 -4.2137 -2.5695 10 1 3.2470 -4.5747 -3.4044 11 1 5.6691 -4.5004 -3.3211 12 1 4.4020 -5.0119 -1.3174 13 6 3.4536 0.3064 -2.2786 14 8 3.7414 -0.1374 -3.3738 15 6 3.4535 1.7619 -2.0503 16 6 2.6215 2.4708 -1.1538 17 7 2.9259 3.7370 -1.2343 18 7 3.9452 3.8997 -2.1792 19 6 4.5356 5.1167 -2.5457 20 6 3.7703 6.2741 -2.5958 21 6 4.3549 7.4718 -2.9580 22 6 5.7013 7.5191 -3.2700 23 6 6.4662 6.3681 -3.2210 24 6 5.8872 5.1675 -2.8596 25 6 4.2664 2.6895 -2.6722 26 6 5.3183 2.3998 -3.7116 27 8 6.5702 2.1560 -3.0673 28 6 7.6416 1.8688 -3.9683 29 1 -1.0498 0.0002 -0.0001 30 1 3.0097 -0.6211 0.8181 31 1 3.0088 1.0203 0.1295 32 1 6.0474 -1.9368 -3.0737 33 1 1.8690 2.0390 -0.5106 34 1 2.7189 6.2378 -2.3515 35 1 3.7602 8.3725 -2.9967 36 1 6.1554 8.4561 -3.5568 37 1 7.5173 6.4082 -3.4657 38 1 6.4852 4.2689 -2.8212 39 1 5.0284 1.5205 -4.2867 40 1 5.4142 3.2556 -4.3799 41 1 7.3996 0.9782 -4.5484 42 1 7.7858 2.7133 -4.6421 43 1 8.5564 1.6953 -3.4016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490964083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = 107.915508 kcal Electronic energy + Delta-G solvation = -29679.577794 eV Core-core repulsion = 25694.656496 eV Total energy + Delta-G solvation = -3984.921298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.89430 -40.28495 -39.54668 -38.84052 -36.52764 -34.88819 -34.19968 -32.96250 -32.61559 -31.79203 -30.22280 -28.63189 -28.15185 -26.88622 -26.04236 -24.43546 -24.03413 -22.70928 -21.79290 -20.49698 -19.39093 -19.14876 -17.99993 -17.73738 -17.57412 -17.42563 -16.83306 -16.52365 -16.47589 -16.06921 -15.73134 -15.68673 -15.40102 -15.07547 -15.01715 -14.40293 -14.34905 -14.09035 -13.84940 -13.54032 -13.47969 -13.22639 -12.93833 -12.80826 -12.62703 -12.53525 -12.45423 -12.29364 -12.11667 -11.96555 -11.43468 -11.26932 -10.97341 -10.85923 -10.76478 -10.11036 -10.04061 -9.98262 -9.21666 -9.15639 -8.03293 -5.94858 -0.27268 0.31269 0.72174 1.19188 1.21874 1.43236 1.49609 1.53419 1.85979 1.96102 2.41132 2.66802 2.73187 2.87936 3.29372 3.30090 3.57689 3.60914 3.73008 3.73982 3.90547 3.96068 4.22024 4.23661 4.27540 4.38147 4.40925 4.44325 4.48879 4.53590 4.57362 4.66399 4.76689 4.81367 4.89205 5.01539 5.16707 5.19691 5.34848 5.40858 5.48037 5.50795 5.73372 6.03877 6.09508 6.21282 6.39574 6.76307 7.04321 7.22937 7.66892 8.40288 8.96111 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.004183 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.283115 B = 6692.469423 C = 8453.827497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.232 4.232 3 C 0.194 3.806 4 N -0.458 5.458 5 C -0.354 4.354 6 H 0.081 0.919 7 C 0.003 3.997 8 N -0.842 5.842 9 Si 0.978 3.022 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.260 1.260 13 C 0.538 3.462 14 O -0.560 6.560 15 C -0.254 4.254 16 C 0.067 3.933 17 N -0.296 5.296 18 N -0.306 5.306 19 C 0.110 3.890 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.109 4.109 23 C -0.097 4.097 24 C -0.147 4.147 25 C 0.119 3.881 26 C 0.138 3.862 27 O -0.396 6.396 28 C 0.032 3.968 29 H 0.254 0.746 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.257 0.743 33 H 0.212 0.788 34 H 0.127 0.873 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.131 0.869 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.572 17.952 -0.806 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.234 4.234 3 C 0.071 3.929 4 N -0.179 5.179 5 C -0.481 4.481 6 H 0.099 0.901 7 C -0.204 4.204 8 N -0.477 5.477 9 Si 0.803 3.197 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.327 3.673 14 O -0.440 6.440 15 C -0.269 4.269 16 C -0.118 4.118 17 N -0.115 5.115 18 N -0.082 5.082 19 C 0.020 3.980 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.167 4.167 25 C -0.010 4.010 26 C 0.060 3.940 27 O -0.315 6.315 28 C -0.063 4.063 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.228 0.772 34 H 0.145 0.855 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.178 0.822 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.761 18.943 -0.786 19.041 hybrid contribution -0.061 -2.346 -0.616 2.427 sum 1.700 16.597 -1.402 16.743 Atomic orbital electron populations 1.25696 0.96476 0.99228 0.98474 1.24017 0.95493 1.01799 1.02052 1.18885 0.84461 1.00820 0.88762 1.43188 1.59745 1.05451 1.09466 1.19309 1.07201 0.81533 1.40071 0.90127 1.26074 0.93871 1.02599 0.97816 1.70131 1.09085 1.36987 1.31506 0.85249 0.76962 0.78961 0.78510 1.20633 1.21145 1.18468 1.17130 0.82257 0.83573 0.84379 1.90491 1.50716 1.77675 1.25129 1.20651 1.04905 0.95492 1.05815 1.24720 0.99410 0.89854 0.97848 1.77091 1.06080 1.18908 1.09409 1.45696 1.28371 1.04493 1.29597 1.18022 0.93031 0.83130 1.03782 1.21158 1.00249 0.91726 1.00964 1.21447 0.96016 0.96932 0.97260 1.21742 0.93609 0.99571 0.97789 1.21394 1.01653 0.90661 0.97835 1.21603 0.91975 1.01327 1.01778 1.21199 0.97467 0.84671 0.97614 1.20764 0.81773 1.01062 0.90421 1.87888 1.17431 1.91150 1.35007 1.22906 0.89111 1.00000 0.94333 0.72945 0.88907 0.88280 0.93375 0.77166 0.85533 0.81915 0.81501 0.82219 0.85081 0.91294 0.90130 0.95016 0.91169 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.57 19.25 74.32 1.43 -4.13 16 2 C -0.23 -8.76 11.73 31.13 0.37 -8.39 16 3 C 0.19 8.28 5.43 84.58 0.46 8.74 16 4 N -0.46 -24.60 2.54 -649.21 -1.65 -26.24 16 5 C -0.35 -20.25 9.31 84.07 0.78 -19.46 16 6 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 7 C 0.00 0.20 4.74 84.94 0.40 0.60 16 8 N -0.84 -51.22 10.63 21.67 0.23 -50.99 16 9 Si 0.98 45.69 29.56 68.60 2.03 47.71 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.54 30.06 6.61 86.64 0.57 30.63 16 14 O -0.56 -35.12 12.50 -4.12 -0.05 -35.17 16 15 C -0.25 -12.13 5.62 -20.14 -0.11 -12.24 16 16 C 0.07 2.74 9.57 85.66 0.82 3.56 16 17 N -0.30 -11.54 12.25 -56.21 -0.69 -12.23 16 18 N -0.31 -11.74 3.71 -174.45 -0.65 -12.39 16 19 C 0.11 3.42 6.26 38.10 0.24 3.66 16 20 C -0.12 -3.03 9.75 22.38 0.22 -2.81 16 21 C -0.10 -1.63 10.04 22.25 0.22 -1.40 16 22 C -0.11 -1.52 10.04 22.29 0.22 -1.30 16 23 C -0.10 -1.72 10.04 22.25 0.22 -1.50 16 24 C -0.15 -3.90 8.25 22.39 0.18 -3.72 16 25 C 0.12 5.17 6.46 42.11 0.27 5.44 16 26 C 0.14 5.52 4.95 71.23 0.35 5.87 16 27 O -0.40 -15.66 8.96 -148.98 -1.34 -17.00 16 28 C 0.03 0.96 11.01 113.37 1.25 2.21 16 29 H 0.25 5.13 7.80 -4.42 -0.03 5.10 16 30 H 0.09 3.80 8.08 -2.39 -0.02 3.78 16 31 H 0.10 4.01 4.44 -2.39 -0.01 4.00 16 32 H 0.26 15.09 8.32 -92.70 -0.77 14.32 16 33 H 0.21 7.71 4.57 -2.91 -0.01 7.70 16 34 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.13 3.91 4.99 -2.91 -0.01 3.89 16 39 H 0.07 3.25 6.49 -2.39 -0.02 3.24 16 40 H 0.08 2.64 6.86 -2.39 -0.02 2.63 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -80.96 366.59 6.84 -74.12 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 1.05 Total: 26.43 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 7.90 Total: 5.76 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -2.75 Total: -101.85 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -1.39 Total: -52.17 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -80.96 6.84 -74.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.032 kcal (2) G-P(sol) polarization free energy of solvation -80.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds