Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47660 * 355.94177 * 3 2 1 5 5 C 1.36888 * 119.99759 * 94.85494 * 4 3 2 6 6 H 1.07999 * 119.99824 * 303.33470 * 5 4 3 7 7 C 1.39033 * 119.99716 * 123.06007 * 5 4 3 8 8 N 1.31369 * 119.99776 * 174.87097 * 7 5 4 9 9 Si 1.86803 * 120.00116 * 354.87299 * 7 5 4 10 10 H 1.48501 * 109.47177 * 95.43655 * 9 7 5 11 11 H 1.48502 * 109.46807 * 215.43893 * 9 7 5 12 12 H 1.48496 * 109.46946 * 335.43426 * 9 7 5 13 13 C 1.34772 * 119.99556 * 274.85246 * 4 3 2 14 14 O 1.21605 * 120.00488 * 354.03474 * 13 4 3 15 15 C 1.47617 * 119.99551 * 174.02718 * 13 4 3 16 16 C 1.41645 * 126.43691 * 173.13061 * 15 13 4 17 17 C 1.35272 * 105.56180 * 179.97438 * 16 15 13 18 18 C 1.50697 * 126.44432 * 179.97438 * 17 16 15 19 19 N 1.36011 * 107.11264 * 359.97438 * 17 16 15 20 20 C 1.39513 * 124.96369 * 180.02562 * 19 17 16 21 21 N 1.32315 * 119.19350 * 359.73184 * 20 19 17 22 22 C 1.32264 * 120.76537 * 179.75895 * 21 20 19 23 23 C 1.50699 * 120.41741 * 180.25445 * 22 21 20 24 24 C 1.38630 * 119.16650 * 0.50453 * 22 21 20 25 25 C 1.38627 * 118.51775 * 359.75486 * 24 22 21 26 26 C 1.50701 * 120.41809 * 180.02562 * 25 24 22 27 27 N 1.32267 * 119.16527 * 359.97438 * 25 24 22 28 28 N 1.28484 * 110.06944 * 359.75508 * 19 17 16 29 29 H 4.40639 * 5.51408 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46712 * 235.93520 * 3 2 1 31 31 H 1.09004 * 109.47006 * 115.94697 * 3 2 1 32 32 H 0.97005 * 120.00335 * 180.02562 * 8 7 5 33 33 H 1.08005 * 127.22032 * 359.93934 * 16 15 13 34 34 H 1.08999 * 109.47203 * 89.97324 * 18 17 16 35 35 H 1.08995 * 109.47432 * 209.97457 * 18 17 16 36 36 H 1.09003 * 109.46995 * 329.97608 * 18 17 16 37 37 H 1.08999 * 109.46984 * 270.25787 * 23 22 21 38 38 H 1.09004 * 109.47233 * 30.25664 * 23 22 21 39 39 H 1.08999 * 109.47417 * 150.25221 * 23 22 21 40 40 H 1.08003 * 120.74038 * 179.73059 * 24 22 21 41 41 H 1.08999 * 109.47126 * 269.97214 * 26 25 24 42 42 H 1.08999 * 109.47203 * 29.97916 * 26 25 24 43 43 H 1.09004 * 109.46514 * 149.97372 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3768 0.0977 5 6 3.4582 -2.0705 -1.0373 6 1 2.7236 -2.2005 -1.8182 7 6 4.7338 -2.6029 -1.1871 8 7 5.0142 -3.3533 -2.2283 9 14 6.0489 -2.2511 0.0920 10 1 6.0947 -3.3642 1.0739 11 1 7.3690 -2.1262 -0.5767 12 1 5.7285 -0.9832 0.7956 13 6 3.2669 -1.9609 1.3051 14 8 3.0846 -1.3124 2.3176 15 6 3.6325 -3.3880 1.3986 16 6 3.9389 -4.1022 2.5828 17 6 4.2098 -5.3662 2.1845 18 6 4.5943 -6.5216 3.0724 19 7 4.0701 -5.3983 0.8320 20 6 4.2633 -6.5268 0.0348 21 7 4.6145 -7.6677 0.6055 22 6 4.8012 -8.7578 -0.1199 23 6 5.1956 -10.0544 0.5389 24 6 4.6346 -8.6912 -1.4946 25 6 4.2715 -7.4784 -2.0593 26 6 4.0783 -7.3578 -3.5490 27 7 4.0957 -6.4286 -1.2741 28 7 3.7287 -4.2387 0.3964 29 1 -1.0497 -0.0005 0.0002 30 1 3.0090 0.5765 0.8514 31 1 3.0091 0.4505 -0.9241 32 1 5.9040 -3.7250 -2.3327 33 1 3.9536 -3.7180 3.5921 34 1 3.6952 -7.0466 3.3951 35 1 5.2364 -7.2070 2.5192 36 1 5.1292 -6.1469 3.9451 37 1 6.2824 -10.1204 0.5896 38 1 4.7820 -10.0904 1.5468 39 1 4.8076 -10.8904 -0.0430 40 1 4.7848 -9.5647 -2.1118 41 1 5.0233 -7.0819 -4.0168 42 1 3.7395 -8.3131 -3.9500 43 1 3.3321 -6.5911 -3.7576 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491020995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = 198.149495 kcal Electronic energy + Delta-G solvation = -30002.239391 eV Core-core repulsion = 26053.523683 eV Total energy + Delta-G solvation = -3948.715708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37035 -40.79903 -38.60540 -34.97536 -34.87983 -34.20719 -32.85070 -32.07034 -31.37064 -30.82891 -29.34098 -27.54934 -27.12631 -26.44582 -24.85056 -23.83699 -22.29672 -21.39475 -20.16373 -19.25856 -17.88768 -17.44932 -17.20590 -16.64441 -16.27890 -15.64744 -15.51004 -15.03081 -14.63220 -14.31983 -14.04268 -13.75949 -13.51948 -13.44613 -13.04166 -12.93648 -12.80478 -12.72677 -12.68316 -12.59385 -12.52482 -12.24879 -12.07392 -11.89336 -11.65173 -10.95796 -10.73957 -10.65985 -10.25135 -10.09508 -9.90577 -9.88180 -9.65389 -9.42842 -9.07086 -8.97734 -8.59162 -8.21740 -8.19861 -7.58480 -6.20012 -4.02795 0.69640 1.12746 2.38120 2.50886 2.71081 3.23889 3.32716 3.35926 3.43969 3.54373 3.88484 3.89364 4.29416 4.31467 4.41298 4.47998 4.61508 4.96355 5.05657 5.10845 5.19909 5.24737 5.26072 5.29632 5.31116 5.52336 5.60079 5.66624 5.70726 5.84862 5.89419 6.04830 6.10933 6.17659 6.21702 6.32904 6.39079 6.42727 6.53738 6.58639 6.95583 7.05867 7.49090 7.73086 7.89566 8.05880 8.28869 8.63634 8.76687 9.12715 9.38901 9.71498 10.86187 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.004691 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.332821 B = 5967.790965 C = 6666.448125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.163 4.163 3 C 0.211 3.789 4 N -0.450 5.450 5 C -0.340 4.340 6 H 0.099 0.901 7 C 0.118 3.882 8 N -0.827 5.827 9 Si 0.843 3.157 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.259 1.259 13 C 0.563 3.437 14 O -0.582 6.582 15 C 0.009 3.991 16 C -0.182 4.182 17 C 0.014 3.986 18 C -0.080 4.080 19 N -0.246 5.246 20 C 0.561 3.439 21 N -0.538 5.538 22 C 0.193 3.807 23 C -0.102 4.102 24 C -0.254 4.254 25 C 0.207 3.793 26 C -0.103 4.103 27 N -0.468 5.468 28 N -0.144 5.144 29 H 0.210 0.790 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.266 0.734 33 H 0.162 0.838 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -13.808 1.038 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.165 4.165 3 C 0.089 3.911 4 N -0.170 5.170 5 C -0.468 4.468 6 H 0.117 0.883 7 C -0.094 4.094 8 N -0.460 5.460 9 Si 0.670 3.330 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.183 1.183 13 C 0.351 3.649 14 O -0.464 6.464 15 C -0.157 4.157 16 C -0.210 4.210 17 C -0.104 4.104 18 C -0.138 4.138 19 N -0.032 5.032 20 C 0.208 3.792 21 N -0.259 5.259 22 C 0.047 3.953 23 C -0.159 4.159 24 C -0.277 4.277 25 C 0.060 3.940 26 C -0.161 4.161 27 N -0.185 5.185 28 N 0.028 4.972 29 H 0.227 0.773 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.179 0.821 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.821 -12.937 0.766 12.986 hybrid contribution 0.870 -0.542 0.895 1.361 sum 1.691 -13.480 1.661 13.686 Atomic orbital electron populations 1.24643 0.95677 1.01246 1.03689 1.23925 0.95154 0.99314 0.98076 1.18564 0.83207 0.86397 1.02970 1.43439 1.57843 1.10045 1.05696 1.18757 0.97767 1.33718 0.96605 0.88334 1.25225 0.96303 0.93552 0.94273 1.69568 1.20809 1.28489 1.27117 0.87380 0.82257 0.80582 0.82816 1.19626 1.21693 1.18338 1.17550 0.79376 0.83845 0.84120 1.90633 1.55818 1.63746 1.36154 1.22195 1.07470 0.95876 0.90125 1.21556 1.07915 0.91740 0.99771 1.21647 1.06994 0.98082 0.83715 1.20469 1.02123 0.94233 0.96979 1.42817 1.49887 1.06434 1.04105 1.18598 0.91499 0.83763 0.85379 1.67610 1.18890 0.98626 1.40805 1.21485 0.90117 0.93280 0.90425 1.20758 1.02608 0.90878 1.01665 1.22537 1.08121 1.00643 0.96415 1.21779 0.87955 0.86889 0.97415 1.20782 1.04557 1.03497 0.87226 1.68004 1.16330 1.31564 1.02602 1.75307 1.11605 0.87687 1.22574 0.77292 0.89308 0.87896 0.92393 0.82093 0.91191 0.88843 0.91090 0.89645 0.89869 0.89931 0.83370 0.89304 0.90474 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.41 19.25 29.55 0.57 -3.84 16 2 C -0.16 -3.50 13.63 -37.12 -0.51 -4.01 16 3 C 0.21 4.69 5.86 -6.83 -0.04 4.65 16 4 N -0.45 -11.75 1.94 -119.09 -0.23 -11.98 16 5 C -0.34 -9.40 8.47 -15.00 -0.13 -9.53 16 6 H 0.10 2.93 8.06 -52.49 -0.42 2.51 16 7 C 0.12 3.27 3.53 -17.45 -0.06 3.21 16 8 N -0.83 -22.99 13.95 55.50 0.77 -22.22 16 9 Si 0.84 22.36 24.05 -169.99 -4.09 18.27 16 10 H -0.27 -7.34 6.14 56.52 0.35 -6.99 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.26 -6.98 6.95 56.52 0.39 -6.58 16 13 C 0.56 15.14 5.60 -12.43 -0.07 15.07 16 14 O -0.58 -16.02 16.56 5.27 0.09 -15.93 16 15 C 0.01 0.23 4.05 -82.75 -0.33 -0.10 16 16 C -0.18 -4.06 10.37 -39.34 -0.41 -4.47 16 17 C 0.01 0.29 6.91 -81.80 -0.56 -0.28 16 18 C -0.08 -1.21 9.57 36.00 0.34 -0.86 16 19 N -0.25 -5.70 3.50 -9.94 -0.03 -5.74 16 20 C 0.56 11.66 8.39 -321.63 -2.70 8.96 16 21 N -0.54 -9.01 7.07 -9.95 -0.07 -9.08 16 22 C 0.19 2.47 6.82 -82.26 -0.56 1.91 16 23 C -0.10 -0.79 10.22 36.01 0.37 -0.42 16 24 C -0.25 -3.07 9.54 -39.29 -0.37 -3.45 16 25 C 0.21 3.24 6.82 -82.26 -0.56 2.68 16 26 C -0.10 -1.28 10.22 36.01 0.37 -0.91 16 27 N -0.47 -9.75 10.08 -9.95 -0.10 -9.85 16 28 N -0.14 -3.74 7.04 33.43 0.24 -3.50 16 29 H 0.21 2.99 7.80 -54.11 -0.42 2.57 16 30 H 0.09 1.91 7.49 -51.93 -0.39 1.52 16 31 H 0.10 2.07 8.00 -51.93 -0.42 1.65 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.16 3.16 8.06 -52.48 -0.42 2.74 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.40 5.92 -51.93 -0.31 1.09 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 40 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -35.85 370.36 -7.88 -43.73 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.38 Total: 2.10 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -4.66 Total: 8.61 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.57 Total: -62.37 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.09 Total: -15.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.09 Total: 18.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.85 -7.88 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.880 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds