Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47660 * 355.94177 * 3 2 1 5 5 C 1.36888 * 119.99759 * 94.85494 * 4 3 2 6 6 H 1.07999 * 119.99824 * 303.33470 * 5 4 3 7 7 C 1.39033 * 119.99716 * 123.06007 * 5 4 3 8 8 N 1.31369 * 119.99776 * 174.87097 * 7 5 4 9 9 Si 1.86803 * 120.00116 * 354.87299 * 7 5 4 10 10 H 1.48501 * 109.47177 * 95.43655 * 9 7 5 11 11 H 1.48502 * 109.46807 * 215.43893 * 9 7 5 12 12 H 1.48496 * 109.46946 * 335.43426 * 9 7 5 13 13 C 1.34772 * 119.99556 * 274.85246 * 4 3 2 14 14 O 1.21605 * 120.00488 * 354.03474 * 13 4 3 15 15 C 1.47617 * 119.99551 * 174.02718 * 13 4 3 16 16 C 1.41645 * 126.43691 * 173.13061 * 15 13 4 17 17 C 1.35272 * 105.56180 * 179.97438 * 16 15 13 18 18 C 1.50697 * 126.44432 * 179.97438 * 17 16 15 19 19 N 1.36011 * 107.11264 * 359.97438 * 17 16 15 20 20 C 1.39513 * 124.96369 * 180.02562 * 19 17 16 21 21 N 1.32315 * 119.19350 * 359.73184 * 20 19 17 22 22 C 1.32264 * 120.76537 * 179.75895 * 21 20 19 23 23 C 1.50699 * 120.41741 * 180.25445 * 22 21 20 24 24 C 1.38630 * 119.16650 * 0.50453 * 22 21 20 25 25 C 1.38627 * 118.51775 * 359.75486 * 24 22 21 26 26 C 1.50701 * 120.41809 * 180.02562 * 25 24 22 27 27 N 1.32267 * 119.16527 * 359.97438 * 25 24 22 28 28 N 1.28484 * 110.06944 * 359.75508 * 19 17 16 29 29 H 4.40639 * 5.51408 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46712 * 235.93520 * 3 2 1 31 31 H 1.09004 * 109.47006 * 115.94697 * 3 2 1 32 32 H 0.97005 * 120.00335 * 180.02562 * 8 7 5 33 33 H 1.08005 * 127.22032 * 359.93934 * 16 15 13 34 34 H 1.08999 * 109.47203 * 89.97324 * 18 17 16 35 35 H 1.08995 * 109.47432 * 209.97457 * 18 17 16 36 36 H 1.09003 * 109.46995 * 329.97608 * 18 17 16 37 37 H 1.08999 * 109.46984 * 270.25787 * 23 22 21 38 38 H 1.09004 * 109.47233 * 30.25664 * 23 22 21 39 39 H 1.08999 * 109.47417 * 150.25221 * 23 22 21 40 40 H 1.08003 * 120.74038 * 179.73059 * 24 22 21 41 41 H 1.08999 * 109.47126 * 269.97214 * 26 25 24 42 42 H 1.08999 * 109.47203 * 29.97916 * 26 25 24 43 43 H 1.09004 * 109.46514 * 149.97372 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3768 0.0977 5 6 3.4582 -2.0705 -1.0373 6 1 2.7236 -2.2005 -1.8182 7 6 4.7338 -2.6029 -1.1871 8 7 5.0142 -3.3533 -2.2283 9 14 6.0489 -2.2511 0.0920 10 1 6.0947 -3.3642 1.0739 11 1 7.3690 -2.1262 -0.5767 12 1 5.7285 -0.9832 0.7956 13 6 3.2669 -1.9609 1.3051 14 8 3.0846 -1.3124 2.3176 15 6 3.6325 -3.3880 1.3986 16 6 3.9389 -4.1022 2.5828 17 6 4.2098 -5.3662 2.1845 18 6 4.5943 -6.5216 3.0724 19 7 4.0701 -5.3983 0.8320 20 6 4.2633 -6.5268 0.0348 21 7 4.6145 -7.6677 0.6055 22 6 4.8012 -8.7578 -0.1199 23 6 5.1956 -10.0544 0.5389 24 6 4.6346 -8.6912 -1.4946 25 6 4.2715 -7.4784 -2.0593 26 6 4.0783 -7.3578 -3.5490 27 7 4.0957 -6.4286 -1.2741 28 7 3.7287 -4.2387 0.3964 29 1 -1.0497 -0.0005 0.0002 30 1 3.0090 0.5765 0.8514 31 1 3.0091 0.4505 -0.9241 32 1 5.9040 -3.7250 -2.3327 33 1 3.9536 -3.7180 3.5921 34 1 3.6952 -7.0466 3.3951 35 1 5.2364 -7.2070 2.5192 36 1 5.1292 -6.1469 3.9451 37 1 6.2824 -10.1204 0.5896 38 1 4.7820 -10.0904 1.5468 39 1 4.8076 -10.8904 -0.0430 40 1 4.7848 -9.5647 -2.1118 41 1 5.0233 -7.0819 -4.0168 42 1 3.7395 -8.3131 -3.9500 43 1 3.3321 -6.5911 -3.7576 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491020995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = 176.560689 kcal Electronic energy + Delta-G solvation = -30003.175552 eV Core-core repulsion = 26053.523683 eV Total energy + Delta-G solvation = -3949.651869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.99876 -42.05984 -40.58120 -36.97200 -36.03180 -35.54206 -34.62346 -33.59587 -33.29959 -32.27888 -30.36649 -28.93286 -28.35102 -27.93164 -26.77357 -25.52155 -23.76201 -22.73380 -21.62731 -21.20599 -19.58278 -18.90751 -18.59021 -18.36921 -17.97349 -17.37400 -16.95525 -16.64779 -16.25699 -15.88613 -15.86186 -15.20433 -14.91164 -14.69273 -14.51705 -14.50629 -14.33361 -14.18025 -13.95010 -13.83500 -13.62951 -13.53994 -13.30217 -13.27535 -12.93808 -12.92626 -12.81844 -12.20252 -11.86071 -11.65992 -11.59924 -11.42126 -11.13139 -11.03730 -11.02128 -10.63703 -10.20348 -9.91061 -9.77361 -9.58735 -8.36275 -6.19409 -0.59829 0.03234 0.72045 0.95834 1.05784 1.16463 1.18248 1.28030 1.69499 1.94338 2.15662 2.40525 2.68211 2.70883 2.78612 3.08324 3.18602 3.42909 3.60091 3.71822 3.80131 4.02493 4.07485 4.26579 4.39082 4.44211 4.55269 4.60910 4.65015 4.67707 4.73703 4.76788 4.80048 4.86915 4.93249 4.95299 5.08886 5.15077 5.23120 5.34335 5.43294 5.70555 5.73194 5.78227 6.13280 6.38410 6.66861 6.71533 6.98887 7.20366 7.30974 7.64429 8.71697 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.004691 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.332821 B = 5967.790965 C = 6666.448125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.227 4.227 3 C 0.208 3.792 4 N -0.457 5.457 5 C -0.338 4.338 6 H 0.068 0.932 7 C 0.106 3.894 8 N -0.841 5.841 9 Si 0.883 3.117 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.555 3.445 14 O -0.599 6.599 15 C -0.029 4.029 16 C -0.205 4.205 17 C 0.026 3.974 18 C -0.073 4.073 19 N -0.253 5.253 20 C 0.520 3.480 21 N -0.535 5.535 22 C 0.184 3.816 23 C -0.096 4.096 24 C -0.221 4.221 25 C 0.178 3.822 26 C -0.098 4.098 27 N -0.521 5.521 28 N -0.177 5.177 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.265 0.735 33 H 0.179 0.821 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.203 0.797 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -17.512 1.404 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.228 4.228 3 C 0.087 3.913 4 N -0.177 5.177 5 C -0.466 4.466 6 H 0.086 0.914 7 C -0.104 4.104 8 N -0.475 5.475 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.344 3.656 14 O -0.483 6.483 15 C -0.193 4.193 16 C -0.232 4.232 17 C -0.093 4.093 18 C -0.131 4.131 19 N -0.040 5.040 20 C 0.166 3.834 21 N -0.256 5.256 22 C 0.039 3.961 23 C -0.153 4.153 24 C -0.243 4.243 25 C 0.033 3.967 26 C -0.155 4.155 27 N -0.239 5.239 28 N -0.007 5.007 29 H 0.272 0.728 30 H 0.108 0.892 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.196 0.804 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.220 0.780 41 H 0.109 0.891 42 H 0.142 0.858 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.112 -16.654 1.082 16.726 hybrid contribution 0.689 0.351 0.712 1.051 sum 1.801 -16.303 1.794 16.500 Atomic orbital electron populations 1.25677 0.96574 0.98023 1.00744 1.24020 0.95690 1.02235 1.00865 1.18615 0.84490 0.84512 1.03713 1.43566 1.57862 1.11305 1.04982 1.18339 0.97104 1.34902 0.96271 0.91418 1.25368 0.96958 0.93275 0.94821 1.69616 1.20909 1.29056 1.27884 0.86784 0.81285 0.79367 0.81542 1.20637 1.21104 1.19488 1.17853 0.79081 0.84574 0.84117 1.90580 1.56814 1.64421 1.36454 1.22260 1.09596 0.95623 0.91789 1.21843 1.09311 0.92315 0.99750 1.22434 1.04522 0.98983 0.83353 1.20639 1.03288 0.92454 0.96675 1.42997 1.49135 1.06487 1.05379 1.18745 0.94647 0.84341 0.85625 1.67688 1.18482 0.98263 1.41196 1.22548 0.88630 0.93773 0.91174 1.20960 1.03732 0.88642 1.01969 1.23088 1.03912 1.00611 0.96696 1.22417 0.88689 0.87387 0.98252 1.20857 1.03816 1.04976 0.85832 1.67854 1.17969 1.34646 1.03459 1.75096 1.12820 0.89110 1.23643 0.72846 0.89159 0.86676 0.92459 0.80369 0.89136 0.88412 0.88564 0.87931 0.89573 0.86478 0.78031 0.89079 0.85823 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.03 19.25 74.32 1.43 -5.60 16 2 C -0.23 -9.91 13.63 31.13 0.42 -9.49 16 3 C 0.21 9.67 5.86 84.57 0.50 10.16 16 4 N -0.46 -25.01 1.94 -648.95 -1.26 -26.27 16 5 C -0.34 -19.68 8.47 84.09 0.71 -18.97 16 6 H 0.07 4.31 8.06 -2.91 -0.02 4.29 16 7 C 0.11 6.13 3.53 84.95 0.30 6.43 16 8 N -0.84 -48.67 13.95 21.68 0.30 -48.37 16 9 Si 0.88 47.96 24.05 68.60 1.65 49.61 16 10 H -0.28 -15.61 6.14 99.48 0.61 -15.00 16 11 H -0.28 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.27 -14.97 6.95 99.48 0.69 -14.28 16 13 C 0.55 31.14 5.60 86.72 0.49 31.63 16 14 O -0.60 -34.22 16.56 -4.05 -0.07 -34.29 16 15 C -0.03 -1.54 4.05 42.47 0.17 -1.37 16 16 C -0.20 -9.31 10.37 22.43 0.23 -9.07 16 17 C 0.03 1.09 6.91 41.23 0.28 1.37 16 18 C -0.07 -2.04 9.57 71.24 0.68 -1.36 16 19 N -0.25 -11.99 3.50 -185.35 -0.65 -12.64 16 20 C 0.52 21.73 8.39 261.07 2.19 23.92 16 21 N -0.53 -16.95 7.07 -185.39 -1.31 -18.26 16 22 C 0.18 4.03 6.82 42.59 0.29 4.33 16 23 C -0.10 -0.97 10.22 71.24 0.73 -0.25 16 24 C -0.22 -4.47 9.54 22.46 0.21 -4.25 16 25 C 0.18 5.35 6.82 42.59 0.29 5.64 16 26 C -0.10 -2.32 10.22 71.24 0.73 -1.59 16 27 N -0.52 -22.14 10.08 -185.38 -1.87 -24.01 16 28 N -0.18 -9.58 7.04 -48.15 -0.34 -9.92 16 29 H 0.26 6.42 7.80 -4.43 -0.03 6.38 16 30 H 0.09 4.07 7.49 -2.39 -0.02 4.05 16 31 H 0.12 4.87 8.00 -2.38 -0.02 4.85 16 32 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 33 H 0.18 7.10 8.06 -2.91 -0.02 7.07 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 2.69 5.92 -2.39 -0.01 2.67 16 36 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.12 0.45 8.10 -2.39 -0.02 0.43 16 40 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.12 1.67 8.10 -2.39 -0.02 1.65 16 43 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -85.94 370.36 7.05 -78.89 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.93 Total: 13.72 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 9.66 Total: 31.54 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -5.12 Total: -139.47 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.07 Total: -34.29 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.65 Total: 49.61 kcal Total: -85.94 7.05 -78.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.454 kcal (2) G-P(sol) polarization free energy of solvation -85.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds