Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34648 * 117.00053 * 2 1 4 4 O 1.21517 * 119.99940 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00342 * 179.97438 * 3 2 1 6 6 C 1.40078 * 120.00090 * 175.45627 * 5 3 2 7 7 C 1.38704 * 120.04345 * 34.71114 * 6 5 3 8 8 C 1.38747 * 119.88732 * 179.97438 * 7 6 5 9 9 N 1.40024 * 120.01533 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00027 * 144.90639 * 9 8 7 11 11 O 1.21284 * 120.00055 * 4.54626 * 10 9 8 12 12 C 1.50701 * 120.00018 * 184.53892 * 10 9 8 13 13 H 1.08997 * 109.47321 * 320.00367 * 12 10 9 14 14 N 1.46891 * 109.47329 * 200.00070 * 12 10 9 15 15 C 1.53003 * 109.46802 * 80.00241 * 12 10 9 16 16 C 1.52997 * 109.46970 * 185.00376 * 15 12 10 17 17 C 1.50697 * 109.47029 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00502 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99888 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99559 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99921 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46736 * 90.00346 * 21 19 17 23 23 H 1.48498 * 109.46893 * 209.99784 * 21 19 17 24 24 H 1.48493 * 109.47355 * 330.00269 * 21 19 17 25 25 C 1.38894 * 119.96930 * 359.97438 * 8 7 6 26 26 C 1.38183 * 120.08164 * 0.26205 * 25 8 7 27 27 C 1.38321 * 120.11492 * 359.48199 * 26 25 8 28 28 F 1.35098 * 119.98897 * 180.25666 * 27 26 25 29 29 H 1.09002 * 109.46720 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47227 * 299.99998 * 1 2 3 31 31 H 1.08996 * 109.47205 * 60.00147 * 1 2 3 32 32 H 0.97002 * 119.99918 * 355.45972 * 5 3 2 33 33 H 1.08006 * 120.05385 * 359.97438 * 7 6 5 34 34 H 0.97003 * 119.99823 * 324.90108 * 9 8 7 35 35 H 1.00907 * 110.99861 * 300.00272 * 14 12 10 36 36 H 1.00902 * 111.00331 * 63.95811 * 14 12 10 37 37 H 1.09008 * 109.47000 * 304.99744 * 15 12 10 38 38 H 1.08993 * 109.47340 * 64.99915 * 15 12 10 39 39 H 1.09006 * 109.47244 * 299.99651 * 16 15 12 40 40 H 1.09000 * 109.47801 * 59.99794 * 16 15 12 41 41 H 0.97003 * 119.99794 * 180.02562 * 20 19 17 42 42 H 1.08000 * 119.95758 * 179.97438 * 25 8 7 43 43 H 1.07996 * 119.94225 * 179.74604 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0454 2.5146 -0.0956 7 6 3.4783 3.6322 0.4988 8 6 4.1114 4.8630 0.4020 9 7 3.5410 5.9931 1.0006 10 6 4.3320 6.9409 1.5413 11 8 5.5375 6.8566 1.4373 12 6 3.7187 8.1056 2.2751 13 1 2.8277 8.4409 1.7444 14 7 4.6895 9.2057 2.3460 15 6 3.3357 7.6714 3.6914 16 6 2.6010 8.8147 4.3941 17 6 2.2232 8.3869 5.7888 18 1 2.4808 7.3982 6.1389 19 6 1.5484 9.2577 6.6180 20 7 1.2191 8.8845 7.8354 21 14 1.1033 10.9680 6.0129 22 1 -0.2356 10.9331 5.3716 23 1 1.0775 11.9084 7.1618 24 1 2.1141 11.4219 5.0242 25 6 5.3113 4.9736 -0.2888 26 6 5.8726 3.8603 -0.8846 27 6 5.2471 2.6306 -0.7858 28 9 5.8008 1.5429 -1.3649 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9374 0.4595 0.0674 33 1 2.5454 3.5445 1.0360 34 1 2.5766 6.0938 1.0260 35 1 5.5251 8.9197 2.8339 36 1 4.9097 9.5536 1.4248 37 1 2.6848 6.7985 3.6402 38 1 4.2368 7.4205 4.2507 39 1 3.2518 9.6877 4.4452 40 1 1.6997 9.0657 3.8348 41 1 0.7441 9.4969 8.4187 42 1 5.8037 5.9318 -0.3644 43 1 6.8035 3.9497 -1.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496217716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = -128.415134 kcal Electronic energy + Delta-G solvation = -28718.256453 eV Core-core repulsion = 24292.317864 eV Total energy + Delta-G solvation = -4425.938589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.18709 -41.33431 -40.63049 -38.97815 -37.11606 -35.77141 -35.34069 -34.46145 -32.80496 -30.64656 -30.53033 -29.54904 -27.82137 -26.78573 -24.15107 -24.05541 -22.49095 -21.78562 -20.49115 -20.02487 -19.55904 -18.38646 -17.84058 -17.62489 -17.06516 -16.90585 -16.72781 -16.36153 -15.92375 -15.73635 -15.55602 -14.73236 -14.55941 -14.47389 -14.21589 -14.15682 -14.09344 -13.61278 -13.47982 -13.15264 -12.84985 -12.62676 -12.51431 -12.47083 -11.95968 -11.72158 -11.28574 -11.15466 -11.09891 -10.91363 -10.86944 -10.52252 -10.19459 -9.96817 -9.82394 -9.62798 -9.13942 -8.88180 -8.58612 -8.47323 -8.21896 -6.01005 -3.98977 0.70377 0.86646 1.58164 2.26206 2.47078 2.86456 3.34520 3.34880 3.42882 3.50154 3.67365 3.86905 4.41829 4.49929 4.59145 4.73220 4.79500 4.83086 4.85110 4.91714 5.02023 5.13028 5.25944 5.26584 5.34768 5.55614 5.65348 5.74780 5.82548 5.92583 6.02210 6.17370 6.23764 6.40429 6.65737 6.74137 6.81531 7.09296 7.27855 7.33335 7.54179 7.57308 7.74387 7.83958 7.96490 8.55816 9.03554 9.61680 11.12453 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.002620 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.474178 B =10683.974783 C =12579.501631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.367 6.367 3 C 0.651 3.349 4 O -0.549 6.549 5 N -0.646 5.646 6 C 0.144 3.856 7 C -0.121 4.121 8 C 0.163 3.837 9 N -0.670 5.670 10 C 0.486 3.514 11 O -0.530 6.530 12 C 0.078 3.922 13 H 0.103 0.897 14 N -0.809 5.809 15 C -0.089 4.089 16 C -0.004 4.004 17 C -0.523 4.523 18 H 0.069 0.931 19 C 0.066 3.934 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.260 1.260 25 C -0.105 4.105 26 C -0.114 4.114 27 C 0.057 3.943 28 F -0.138 7.138 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.421 0.579 33 H 0.157 0.843 34 H 0.418 0.582 35 H 0.351 0.649 36 H 0.337 0.663 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.009 0.991 41 H 0.262 0.738 42 H 0.151 0.849 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -16.147 -21.684 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.280 6.280 3 C 0.405 3.595 4 O -0.436 6.436 5 N -0.298 5.298 6 C 0.049 3.951 7 C -0.143 4.143 8 C 0.067 3.933 9 N -0.316 5.316 10 C 0.273 3.727 11 O -0.406 6.406 12 C -0.038 4.038 13 H 0.121 0.879 14 N -0.337 5.337 15 C -0.127 4.127 16 C -0.041 4.041 17 C -0.561 4.561 18 H 0.087 0.913 19 C -0.135 4.135 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.184 1.184 25 C -0.126 4.126 26 C -0.134 4.134 27 C 0.035 3.965 28 F -0.117 7.117 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.258 0.742 33 H 0.174 0.826 34 H 0.255 0.745 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.169 0.831 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.783 -15.302 -21.132 26.363 hybrid contribution -0.020 -0.480 -0.767 0.905 sum 3.763 -15.781 -21.899 27.254 Atomic orbital electron populations 1.23317 0.73394 1.03951 1.03259 1.86245 1.24911 1.30207 1.86652 1.18016 0.82773 0.82675 0.76081 1.91029 1.64263 1.34511 1.53801 1.41686 1.03830 1.08793 1.75515 1.17023 0.92825 0.85200 1.00061 1.20975 1.03017 0.89436 1.00908 1.17651 0.94447 0.86653 0.94577 1.43826 1.11365 1.19568 1.56821 1.23014 0.87781 0.84510 0.77364 1.90651 1.14740 1.76638 1.58571 1.21918 0.96493 0.86634 0.98773 0.87918 1.59014 1.18390 1.33232 1.23062 1.21507 1.00857 1.00428 0.89905 1.19486 0.94891 0.94379 0.95370 1.21170 1.36520 1.01860 0.96506 0.91306 1.25021 0.95332 0.98476 0.94681 1.69926 1.40736 1.36443 1.07399 0.86766 0.79279 0.84622 0.78629 1.20498 1.21610 1.18389 1.21206 0.95505 0.99996 0.95898 1.20877 1.01054 0.90119 1.01373 1.17348 0.94608 0.84417 1.00119 1.91476 1.85015 1.52701 1.82494 0.87554 0.91270 0.91493 0.74158 0.82564 0.74544 0.83408 0.85131 0.92035 0.92024 0.94715 0.97260 0.92815 0.83120 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.56 101.05 1.07 1.40 16 2 O -0.37 -3.24 10.62 -40.35 -0.43 -3.67 16 3 C 0.65 7.03 8.60 54.06 0.46 7.50 16 4 O -0.55 -7.28 13.55 -19.29 -0.26 -7.54 16 5 N -0.65 -6.18 5.23 -14.22 -0.07 -6.25 16 6 C 0.14 1.58 6.31 -83.61 -0.53 1.05 16 7 C -0.12 -1.44 8.61 -39.22 -0.34 -1.78 16 8 C 0.16 1.97 6.30 -83.68 -0.53 1.45 16 9 N -0.67 -7.91 5.34 -9.86 -0.05 -7.96 16 10 C 0.49 6.68 6.91 -10.98 -0.08 6.60 16 11 O -0.53 -8.32 13.69 5.55 0.08 -8.24 16 12 C 0.08 1.12 3.15 -68.87 -0.22 0.91 16 13 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 14 N -0.81 -11.61 8.44 -5.66 -0.05 -11.66 16 15 C -0.09 -1.63 4.78 -26.73 -0.13 -1.76 16 16 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 17 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 18 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 19 C 0.07 1.91 5.47 -17.81 -0.10 1.82 16 20 N -0.91 -28.02 13.96 55.43 0.77 -27.24 16 21 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 25 C -0.11 -1.22 8.69 -39.36 -0.34 -1.56 16 26 C -0.11 -1.14 10.01 -39.57 -0.40 -1.54 16 27 C 0.06 0.60 7.31 -39.24 -0.29 0.31 16 28 F -0.14 -1.38 16.95 2.25 0.04 -1.34 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.42 2.99 8.77 -40.82 -0.36 2.63 16 33 H 0.16 1.97 6.19 -52.48 -0.33 1.65 16 34 H 0.42 4.10 8.82 -40.82 -0.36 3.74 16 35 H 0.35 5.17 8.58 -39.29 -0.34 4.83 16 36 H 0.34 4.04 9.06 -39.29 -0.36 3.68 16 37 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 40 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.15 1.83 6.22 -52.49 -0.33 1.50 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -34.57 371.50 -6.25 -40.82 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.35 Total: 11.33 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.85 Total: -0.85 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.60 Total: -53.12 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.61 Total: -19.45 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.57 -6.25 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496217716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.597 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds