Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34648 * 117.00053 * 2 1 4 4 O 1.21517 * 119.99940 * 359.97438 * 3 2 1 5 5 N 1.34782 * 120.00342 * 179.97438 * 3 2 1 6 6 C 1.40078 * 120.00090 * 175.45627 * 5 3 2 7 7 C 1.38704 * 120.04345 * 34.71114 * 6 5 3 8 8 C 1.38747 * 119.88732 * 179.97438 * 7 6 5 9 9 N 1.40024 * 120.01533 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00027 * 144.90639 * 9 8 7 11 11 O 1.21284 * 120.00055 * 4.54626 * 10 9 8 12 12 C 1.50701 * 120.00018 * 184.53892 * 10 9 8 13 13 H 1.08997 * 109.47321 * 320.00367 * 12 10 9 14 14 N 1.46891 * 109.47329 * 200.00070 * 12 10 9 15 15 C 1.53003 * 109.46802 * 80.00241 * 12 10 9 16 16 C 1.52997 * 109.46970 * 185.00376 * 15 12 10 17 17 C 1.50697 * 109.47029 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00502 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99888 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99559 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99921 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46736 * 90.00346 * 21 19 17 23 23 H 1.48498 * 109.46893 * 209.99784 * 21 19 17 24 24 H 1.48493 * 109.47355 * 330.00269 * 21 19 17 25 25 C 1.38894 * 119.96930 * 359.97438 * 8 7 6 26 26 C 1.38183 * 120.08164 * 0.26205 * 25 8 7 27 27 C 1.38321 * 120.11492 * 359.48199 * 26 25 8 28 28 F 1.35098 * 119.98897 * 180.25666 * 27 26 25 29 29 H 1.09002 * 109.46720 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47227 * 299.99998 * 1 2 3 31 31 H 1.08996 * 109.47205 * 60.00147 * 1 2 3 32 32 H 0.97002 * 119.99918 * 355.45972 * 5 3 2 33 33 H 1.08006 * 120.05385 * 359.97438 * 7 6 5 34 34 H 0.97003 * 119.99823 * 324.90108 * 9 8 7 35 35 H 1.00907 * 110.99861 * 300.00272 * 14 12 10 36 36 H 1.00902 * 111.00331 * 63.95811 * 14 12 10 37 37 H 1.09008 * 109.47000 * 304.99744 * 15 12 10 38 38 H 1.08993 * 109.47340 * 64.99915 * 15 12 10 39 39 H 1.09006 * 109.47244 * 299.99651 * 16 15 12 40 40 H 1.09000 * 109.47801 * 59.99794 * 16 15 12 41 41 H 0.97003 * 119.99794 * 180.02562 * 20 19 17 42 42 H 1.08000 * 119.95758 * 179.97438 * 25 8 7 43 43 H 1.07996 * 119.94225 * 179.74604 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0454 2.5146 -0.0956 7 6 3.4783 3.6322 0.4988 8 6 4.1114 4.8630 0.4020 9 7 3.5410 5.9931 1.0006 10 6 4.3320 6.9409 1.5413 11 8 5.5375 6.8566 1.4373 12 6 3.7187 8.1056 2.2751 13 1 2.8277 8.4409 1.7444 14 7 4.6895 9.2057 2.3460 15 6 3.3357 7.6714 3.6914 16 6 2.6010 8.8147 4.3941 17 6 2.2232 8.3869 5.7888 18 1 2.4808 7.3982 6.1389 19 6 1.5484 9.2577 6.6180 20 7 1.2191 8.8845 7.8354 21 14 1.1033 10.9680 6.0129 22 1 -0.2356 10.9331 5.3716 23 1 1.0775 11.9084 7.1618 24 1 2.1141 11.4219 5.0242 25 6 5.3113 4.9736 -0.2888 26 6 5.8726 3.8603 -0.8846 27 6 5.2471 2.6306 -0.7858 28 9 5.8008 1.5429 -1.3649 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.9374 0.4595 0.0674 33 1 2.5454 3.5445 1.0360 34 1 2.5766 6.0938 1.0260 35 1 5.5251 8.9197 2.8339 36 1 4.9097 9.5536 1.4248 37 1 2.6848 6.7985 3.6402 38 1 4.2368 7.4205 4.2507 39 1 3.2518 9.6877 4.4452 40 1 1.6997 9.0657 3.8348 41 1 0.7441 9.4969 8.4187 42 1 5.8037 5.9318 -0.3644 43 1 6.8035 3.9497 -1.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496217716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = -155.450113 kcal Electronic energy + Delta-G solvation = -28719.428778 eV Core-core repulsion = 24292.317864 eV Total energy + Delta-G solvation = -4427.110913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.00166 -42.18588 -41.61169 -39.88358 -37.92784 -36.94532 -36.46721 -35.38933 -34.78477 -32.29392 -31.47144 -30.46475 -28.47992 -28.24951 -25.61430 -24.88579 -23.53047 -22.76068 -21.96983 -21.22433 -20.37773 -19.25787 -19.02432 -18.70001 -18.40192 -17.86463 -17.74580 -17.27080 -17.00558 -16.68980 -16.54003 -16.26046 -15.72789 -15.54691 -15.16417 -15.06353 -15.04711 -14.83505 -14.68713 -14.31928 -14.12859 -13.95634 -13.69534 -13.47199 -13.05958 -12.81034 -12.80042 -12.56058 -12.09819 -11.95639 -11.92245 -11.76158 -11.72407 -11.59132 -11.32440 -11.18847 -11.04616 -10.70184 -9.79927 -9.65464 -9.11408 -8.24233 -6.27648 -0.17746 0.00259 0.84801 1.30992 1.41383 1.44852 1.51490 1.58647 1.89208 2.42697 2.46965 2.96104 3.04029 3.12623 3.45864 3.62962 3.72866 3.98566 4.03377 4.05686 4.19846 4.24987 4.27801 4.33710 4.40244 4.68139 4.70615 4.79795 4.82493 4.97484 5.04221 5.07670 5.13875 5.17638 5.29353 5.50927 5.66693 5.74524 5.76818 5.98315 6.04671 6.28230 6.33066 6.53224 6.81520 6.93239 6.96422 7.36976 8.92774 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.002620 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.474178 B =10683.974783 C =12579.501631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.365 6.365 3 C 0.648 3.352 4 O -0.577 6.577 5 N -0.639 5.639 6 C 0.139 3.861 7 C -0.128 4.128 8 C 0.150 3.850 9 N -0.661 5.661 10 C 0.492 3.508 11 O -0.550 6.550 12 C 0.089 3.911 13 H 0.127 0.873 14 N -0.816 5.816 15 C -0.081 4.081 16 C 0.002 3.998 17 C -0.532 4.532 18 H 0.027 0.973 19 C 0.001 3.999 20 N -0.957 5.957 21 Si 0.953 3.047 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.241 1.241 25 C -0.112 4.112 26 C -0.105 4.105 27 C 0.061 3.939 28 F -0.133 7.133 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.433 0.567 33 H 0.147 0.853 34 H 0.427 0.573 35 H 0.348 0.652 36 H 0.352 0.648 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.032 0.968 40 H 0.024 0.976 41 H 0.264 0.736 42 H 0.147 0.853 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -15.867 -24.098 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.278 6.278 3 C 0.403 3.597 4 O -0.467 6.467 5 N -0.292 5.292 6 C 0.044 3.956 7 C -0.151 4.151 8 C 0.054 3.946 9 N -0.307 5.307 10 C 0.279 3.721 11 O -0.427 6.427 12 C -0.027 4.027 13 H 0.145 0.855 14 N -0.346 5.346 15 C -0.120 4.120 16 C -0.035 4.035 17 C -0.570 4.570 18 H 0.045 0.955 19 C -0.195 4.195 20 N -0.598 5.598 21 Si 0.777 3.223 22 H -0.190 1.190 23 H -0.217 1.217 24 H -0.164 1.164 25 C -0.132 4.132 26 C -0.125 4.125 27 C 0.038 3.962 28 F -0.112 7.112 29 H 0.158 0.842 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.272 0.728 33 H 0.165 0.835 34 H 0.265 0.735 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.165 0.835 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.909 -15.070 -23.584 28.259 hybrid contribution -0.055 -0.740 0.002 0.742 sum 3.854 -15.810 -23.581 28.651 Atomic orbital electron populations 1.23620 0.71918 1.06081 1.02982 1.86269 1.26322 1.28979 1.86226 1.18186 0.83005 0.82868 0.75663 1.91008 1.64941 1.35572 1.55148 1.41646 1.03661 1.08900 1.74969 1.17118 0.93089 0.85464 0.99931 1.20899 1.02861 0.89856 1.01476 1.17768 0.94983 0.86635 0.95231 1.43689 1.11748 1.19075 1.56156 1.22737 0.87459 0.84512 0.77398 1.90647 1.15534 1.77023 1.59512 1.21691 0.97621 0.87089 0.96324 0.85523 1.59001 1.18278 1.33062 1.24237 1.21282 0.99603 0.99054 0.92032 1.19374 0.95722 0.95624 0.92793 1.21586 1.35969 1.00223 0.99242 0.95508 1.26045 0.95370 1.03405 0.94706 1.70092 1.42240 1.38332 1.09117 0.85607 0.79850 0.78534 0.78358 1.19036 1.21689 1.16414 1.21231 0.95337 1.00372 0.96304 1.21119 1.01571 0.89293 1.00513 1.17358 0.94313 0.84723 0.99790 1.91492 1.84872 1.52502 1.82347 0.84224 0.91829 0.91547 0.72792 0.83545 0.73488 0.83785 0.83409 0.91754 0.93900 0.94956 0.95816 0.92693 0.83534 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -6.08 10.62 -55.57 -0.59 -6.67 16 3 C 0.65 13.68 8.60 129.79 1.12 14.79 16 4 O -0.58 -15.30 13.55 19.79 0.27 -15.03 16 5 N -0.64 -11.65 5.23 -429.31 -2.25 -13.90 16 6 C 0.14 2.94 6.31 38.13 0.24 3.18 16 7 C -0.13 -3.02 8.61 22.50 0.19 -2.82 16 8 C 0.15 3.51 6.30 38.11 0.24 3.75 16 9 N -0.66 -14.91 5.34 -303.50 -1.62 -16.53 16 10 C 0.49 12.88 6.91 87.66 0.61 13.49 16 11 O -0.55 -16.66 13.69 -3.04 -0.04 -16.70 16 12 C 0.09 2.40 3.15 44.17 0.14 2.54 16 13 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 14 N -0.82 -21.87 8.44 -171.81 -1.45 -23.32 16 15 C -0.08 -2.95 4.78 30.59 0.15 -2.81 16 16 C 0.00 0.11 3.93 29.85 0.12 0.22 16 17 C -0.53 -30.54 9.66 25.60 0.25 -30.29 16 18 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 19 C 0.00 0.04 5.47 84.66 0.46 0.51 16 20 N -0.96 -60.67 13.96 21.45 0.30 -60.37 16 21 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 25 C -0.11 -2.43 8.69 22.41 0.19 -2.24 16 26 C -0.11 -1.90 10.01 22.28 0.22 -1.67 16 27 C 0.06 1.16 7.31 22.49 0.16 1.32 16 28 F -0.13 -2.39 16.95 44.97 0.76 -1.63 16 29 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.43 5.62 8.77 -92.71 -0.81 4.81 16 33 H 0.15 3.74 6.19 -2.91 -0.02 3.72 16 34 H 0.43 7.88 8.82 -92.71 -0.82 7.06 16 35 H 0.35 9.83 8.58 -89.69 -0.77 9.06 16 36 H 0.35 7.60 9.06 -89.69 -0.81 6.79 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.03 1.47 6.81 -2.38 -0.02 1.45 16 40 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.15 3.36 6.22 -2.91 -0.02 3.34 16 43 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -75.46 371.50 0.40 -75.06 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -2.15 Total: 31.23 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 5.29 Total: 1.69 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -5.02 Total: -114.13 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.36 Total: -38.41 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.76 Total: -1.63 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -75.46 0.40 -75.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496217716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.387 kcal (2) G-P(sol) polarization free energy of solvation -75.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds