Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.41452 * 126.47146 * 252.69000 * 3 2 1 5 5 N 1.30353 * 108.37840 * 179.77835 * 4 3 2 6 6 N 1.39910 * 109.25617 * 0.38824 * 5 4 3 7 7 C 1.39734 * 125.83629 * 179.86810 * 6 5 4 8 8 C 1.39083 * 119.92659 * 324.69527 * 7 6 5 9 9 C 1.37707 * 120.07867 * 180.02562 * 8 7 6 10 10 C 1.39720 * 119.92215 * 0.25835 * 9 8 7 11 11 C 1.47640 * 120.07859 * 179.70133 * 10 9 8 12 12 O 1.21580 * 119.99548 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00017 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47256 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47126 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00227 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00208 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47306 * 120.00052 * 21 19 17 24 24 H 1.48501 * 109.47081 * 240.00467 * 21 19 17 25 25 C 1.39734 * 119.84854 * 359.44005 * 10 9 8 26 26 C 1.37708 * 119.91666 * 0.60452 * 25 10 9 27 27 C 1.35859 * 108.32283 * 359.60898 * 6 5 4 28 28 N 1.38118 * 126.50773 * 180.20438 * 27 6 5 29 29 H 1.07998 * 125.81079 * 0.02862 * 4 3 2 30 30 H 1.07999 * 119.95980 * 359.97438 * 8 7 6 31 31 H 1.08002 * 120.03601 * 179.97438 * 9 8 7 32 32 H 0.96998 * 119.99913 * 0.02562 * 13 11 10 33 33 H 1.09002 * 109.47323 * 299.99832 * 14 13 11 34 34 H 1.09000 * 109.47576 * 59.99855 * 14 13 11 35 35 H 1.09002 * 109.46617 * 300.00019 * 15 14 13 36 36 H 1.09002 * 109.46742 * 59.99995 * 15 14 13 37 37 H 1.08994 * 109.47769 * 299.99927 * 16 15 14 38 38 H 1.09008 * 109.47319 * 60.00072 * 16 15 14 39 39 H 0.96998 * 120.00220 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.04380 * 180.25789 * 25 10 9 41 41 H 1.07996 * 119.95446 * 179.67531 * 26 25 10 42 42 H 0.97002 * 119.99787 * 359.97438 * 28 27 6 43 43 H 0.96998 * 120.00067 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4087 0.3395 1.0860 5 7 4.6478 0.2150 0.7009 6 7 4.6764 -0.1958 -0.6362 7 6 5.8257 -0.4319 -1.3951 8 6 6.9576 0.3530 -1.2027 9 6 8.0918 0.1234 -1.9492 10 6 8.1028 -0.8959 -2.9046 11 6 9.3147 -1.1408 -3.7115 12 8 10.3045 -0.4547 -3.5452 13 7 9.3237 -2.1249 -4.6324 14 6 10.5265 -2.3682 -5.4326 15 6 10.2724 -3.5304 -6.3948 16 6 11.5283 -3.7840 -7.2310 17 6 11.2783 -4.9291 -8.1783 18 1 10.3194 -5.4259 -8.1837 19 6 12.2738 -5.3424 -9.0380 20 7 13.4417 -4.7378 -9.0311 21 14 11.9637 -6.7614 -10.2128 22 1 10.5803 -7.2671 -10.0238 23 1 12.1330 -6.2922 -11.6114 24 1 12.9313 -7.8534 -9.9363 25 6 6.9659 -1.6868 -3.0910 26 6 5.8349 -1.4510 -2.3416 27 6 3.3957 -0.3315 -1.0688 28 7 2.9916 -0.7240 -2.3299 29 1 3.0799 0.6450 2.0683 30 1 6.9468 1.1441 -0.4674 31 1 8.9703 0.7336 -1.7995 32 1 8.5339 -2.6720 -4.7653 33 1 10.7711 -1.4719 -6.0027 34 1 11.3576 -2.6172 -4.7729 35 1 10.0276 -4.4268 -5.8251 36 1 9.4414 -3.2808 -7.0546 37 1 11.7728 -2.8875 -7.8007 38 1 12.3597 -4.0334 -6.5715 39 1 14.1421 -5.0288 -9.6357 40 1 6.9723 -2.4782 -3.8257 41 1 4.9542 -2.0584 -2.4888 42 1 3.6530 -0.9337 -3.0077 43 1 2.0464 -0.7898 -2.5377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505502022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = 91.097944 kcal Electronic energy + Delta-G solvation = -26420.100172 eV Core-core repulsion = 22466.742360 eV Total energy + Delta-G solvation = -3953.357812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28662 -40.36525 -38.68217 -36.76996 -35.78885 -35.57199 -34.04695 -33.40191 -31.81345 -31.23579 -29.91860 -29.58477 -26.91380 -24.88456 -23.91569 -23.15611 -22.32969 -21.77891 -20.83980 -20.32576 -19.50161 -18.25801 -18.06336 -16.90374 -16.62023 -16.37553 -16.22633 -15.69128 -15.46705 -15.23879 -14.87826 -14.48219 -14.36987 -14.16481 -14.13780 -13.89372 -13.70145 -13.44642 -13.06333 -13.02201 -12.78405 -12.35945 -12.10930 -11.93774 -11.82914 -11.76684 -11.32688 -10.97789 -10.82522 -10.63731 -10.57934 -10.14269 -9.95895 -9.69069 -9.49565 -9.17514 -9.04065 -8.79614 -8.59673 -8.43171 -6.07534 -4.10944 0.01248 0.70390 1.18326 1.39102 1.66290 2.31869 2.52662 2.82108 3.14006 3.17964 3.25668 3.33598 3.36443 3.40747 3.66019 4.05984 4.15488 4.26619 4.35767 4.39272 4.49639 4.67291 4.84097 4.88172 4.95764 5.28497 5.32420 5.39315 5.50757 5.59480 5.67006 5.77849 5.83265 5.89517 6.05241 6.13871 6.31462 6.42675 6.49350 6.65027 6.70598 6.90567 7.05615 7.28687 7.50384 7.56978 7.68591 7.90687 8.16077 8.31585 8.95849 9.53698 11.03676 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.001656 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.201267 B =16907.620524 C =18157.563253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.297 3.703 3 C -0.260 4.260 4 C 0.139 3.861 5 N -0.285 5.285 6 N -0.344 5.344 7 C 0.171 3.829 8 C -0.112 4.112 9 C -0.036 4.036 10 C -0.127 4.127 11 C 0.550 3.450 12 O -0.535 6.535 13 N -0.718 5.718 14 C 0.115 3.885 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.892 5.892 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.059 4.059 26 C -0.153 4.153 27 C 0.434 3.566 28 N -0.832 5.832 29 H 0.201 0.799 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.412 0.588 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.774 10.112 17.833 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.017 4.017 3 C -0.281 4.281 4 C -0.054 4.054 5 N -0.101 5.101 6 N -0.125 5.125 7 C 0.080 3.920 8 C -0.132 4.132 9 C -0.056 4.056 10 C -0.131 4.131 11 C 0.336 3.664 12 O -0.413 6.413 13 N -0.369 5.369 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.015 4.015 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.079 4.079 26 C -0.174 4.174 27 C 0.201 3.799 28 N -0.381 5.381 29 H 0.218 0.782 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.245 0.755 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -20.298 10.693 18.180 29.273 hybrid contribution -0.972 -1.334 -1.370 2.145 sum -21.270 9.360 16.811 28.681 Atomic orbital electron populations 1.81319 1.11464 1.12392 1.07007 1.24308 0.90924 0.92341 0.94143 1.15126 0.85694 1.31687 0.95604 1.23905 0.88382 0.94299 0.98791 1.77439 1.20157 1.23828 0.88653 1.45459 1.01538 1.55691 1.09762 1.17574 0.85426 0.96166 0.92864 1.20975 0.91496 0.99728 1.00995 1.21275 0.97828 0.94967 0.91500 1.20238 0.94704 0.98720 0.99393 1.18124 0.87226 0.80842 0.80223 1.90805 1.34821 1.47769 1.67937 1.46150 1.17808 1.34581 1.38353 1.21727 0.85812 0.99905 0.93272 1.21903 1.02123 0.95025 0.96875 1.19038 0.91167 0.97092 0.94165 1.21225 0.99010 1.16341 1.19605 0.92593 1.25029 0.95155 0.96876 0.97373 1.69970 1.03828 1.41199 1.38148 0.86529 0.78237 0.82316 0.80857 1.19784 1.20981 1.20977 1.21194 0.91109 0.97862 0.97718 1.20870 1.00253 0.97466 0.98815 1.18128 0.84619 0.90692 0.86498 1.41939 1.12276 1.74938 1.08924 0.78192 0.83747 0.83242 0.76795 0.91420 0.91407 0.92652 0.92674 0.96206 0.96197 0.92935 0.84089 0.84670 0.75512 0.74417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.53 18.54 41.83 0.78 -3.75 16 2 C 0.30 2.34 15.57 -22.47 -0.35 1.99 16 3 C -0.26 -1.68 6.01 -106.39 -0.64 -2.32 16 4 C 0.14 0.80 11.98 -16.96 -0.20 0.60 16 5 N -0.29 -2.22 12.21 30.88 0.38 -1.84 16 6 N -0.34 -2.50 3.73 -9.35 -0.03 -2.54 16 7 C 0.17 1.24 6.38 -83.63 -0.53 0.71 16 8 C -0.11 -0.86 9.73 -39.46 -0.38 -1.24 16 9 C -0.04 -0.32 9.58 -39.22 -0.38 -0.70 16 10 C -0.13 -1.21 5.88 -104.95 -0.62 -1.82 16 11 C 0.55 7.24 7.77 -12.42 -0.10 7.15 16 12 O -0.54 -9.16 16.34 5.30 0.09 -9.08 16 13 N -0.72 -8.98 5.51 -61.32 -0.34 -9.31 16 14 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 15 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 16 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 17 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 21 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.06 -0.39 9.53 -39.22 -0.37 -0.77 16 26 C -0.15 -0.88 8.40 -39.46 -0.33 -1.21 16 27 C 0.43 2.61 7.75 -152.80 -1.18 1.43 16 28 N -0.83 -2.68 8.64 31.59 0.27 -2.41 16 29 H 0.20 0.47 8.06 -52.49 -0.42 0.05 16 30 H 0.14 1.00 8.05 -52.49 -0.42 0.58 16 31 H 0.15 1.33 7.64 -52.49 -0.40 0.93 16 32 H 0.40 3.69 6.49 -40.82 -0.27 3.43 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.14 0.63 6.39 -52.49 -0.34 0.30 16 41 H 0.14 0.48 6.27 -52.49 -0.33 0.15 16 42 H 0.41 0.83 6.18 -40.82 -0.25 0.57 16 43 H 0.42 0.86 8.68 -40.82 -0.35 0.50 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -34.96 380.83 -8.07 -43.02 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.86 Total: -1.11 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -5.80 Total: -9.22 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 1.79 Total: -45.26 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.96 -8.07 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505502022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.122 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds