Wall clock time and date at job start Sat Apr 11 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.41452 * 126.47146 * 252.69000 * 3 2 1 5 5 N 1.30353 * 108.37840 * 179.77835 * 4 3 2 6 6 N 1.39910 * 109.25617 * 0.38824 * 5 4 3 7 7 C 1.39734 * 125.83629 * 179.86810 * 6 5 4 8 8 C 1.39083 * 119.92659 * 324.69527 * 7 6 5 9 9 C 1.37707 * 120.07867 * 180.02562 * 8 7 6 10 10 C 1.39720 * 119.92215 * 0.25835 * 9 8 7 11 11 C 1.47640 * 120.07859 * 179.70133 * 10 9 8 12 12 O 1.21580 * 119.99548 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00017 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47256 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47070 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47126 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00227 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00208 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47306 * 120.00052 * 21 19 17 24 24 H 1.48501 * 109.47081 * 240.00467 * 21 19 17 25 25 C 1.39734 * 119.84854 * 359.44005 * 10 9 8 26 26 C 1.37708 * 119.91666 * 0.60452 * 25 10 9 27 27 C 1.35859 * 108.32283 * 359.60898 * 6 5 4 28 28 N 1.38118 * 126.50773 * 180.20438 * 27 6 5 29 29 H 1.07998 * 125.81079 * 0.02862 * 4 3 2 30 30 H 1.07999 * 119.95980 * 359.97438 * 8 7 6 31 31 H 1.08002 * 120.03601 * 179.97438 * 9 8 7 32 32 H 0.96998 * 119.99913 * 0.02562 * 13 11 10 33 33 H 1.09002 * 109.47323 * 299.99832 * 14 13 11 34 34 H 1.09000 * 109.47576 * 59.99855 * 14 13 11 35 35 H 1.09002 * 109.46617 * 300.00019 * 15 14 13 36 36 H 1.09002 * 109.46742 * 59.99995 * 15 14 13 37 37 H 1.08994 * 109.47769 * 299.99927 * 16 15 14 38 38 H 1.09008 * 109.47319 * 60.00072 * 16 15 14 39 39 H 0.96998 * 120.00220 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.04380 * 180.25789 * 25 10 9 41 41 H 1.07996 * 119.95446 * 179.67531 * 26 25 10 42 42 H 0.97002 * 119.99787 * 359.97438 * 28 27 6 43 43 H 0.96998 * 120.00067 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4087 0.3395 1.0860 5 7 4.6478 0.2150 0.7009 6 7 4.6764 -0.1958 -0.6362 7 6 5.8257 -0.4319 -1.3951 8 6 6.9576 0.3530 -1.2027 9 6 8.0918 0.1234 -1.9492 10 6 8.1028 -0.8959 -2.9046 11 6 9.3147 -1.1408 -3.7115 12 8 10.3045 -0.4547 -3.5452 13 7 9.3237 -2.1249 -4.6324 14 6 10.5265 -2.3682 -5.4326 15 6 10.2724 -3.5304 -6.3948 16 6 11.5283 -3.7840 -7.2310 17 6 11.2783 -4.9291 -8.1783 18 1 10.3194 -5.4259 -8.1837 19 6 12.2738 -5.3424 -9.0380 20 7 13.4417 -4.7378 -9.0311 21 14 11.9637 -6.7614 -10.2128 22 1 10.5803 -7.2671 -10.0238 23 1 12.1330 -6.2922 -11.6114 24 1 12.9313 -7.8534 -9.9363 25 6 6.9659 -1.6868 -3.0910 26 6 5.8349 -1.4510 -2.3416 27 6 3.3957 -0.3315 -1.0688 28 7 2.9916 -0.7240 -2.3299 29 1 3.0799 0.6450 2.0683 30 1 6.9468 1.1441 -0.4674 31 1 8.9703 0.7336 -1.7995 32 1 8.5339 -2.6720 -4.7653 33 1 10.7711 -1.4719 -6.0027 34 1 11.3576 -2.6172 -4.7729 35 1 10.0276 -4.4268 -5.8251 36 1 9.4414 -3.2808 -7.0546 37 1 11.7728 -2.8875 -7.8007 38 1 12.3597 -4.0334 -6.5715 39 1 14.1421 -5.0288 -9.6357 40 1 6.9723 -2.4782 -3.8257 41 1 4.9542 -2.0584 -2.4888 42 1 3.6530 -0.9337 -3.0077 43 1 2.0464 -0.7898 -2.5377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505502022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:03 Heat of formation + Delta-G solvation = 68.461962 kcal Electronic energy + Delta-G solvation = -26421.081742 eV Core-core repulsion = 22466.742360 eV Total energy + Delta-G solvation = -3954.339381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.77653 -41.23281 -39.49106 -37.42350 -36.99516 -36.17261 -35.26847 -34.56123 -33.11855 -32.13855 -30.69268 -30.05739 -28.52035 -25.86999 -24.64677 -24.37205 -22.92186 -22.50290 -22.22144 -21.33843 -19.98624 -19.05803 -18.69276 -18.44572 -17.41360 -17.20912 -16.78955 -16.69060 -16.57681 -16.38022 -15.91469 -15.53596 -15.43688 -15.07612 -14.72206 -14.58801 -14.39593 -14.22903 -14.08009 -13.78745 -13.77276 -13.70827 -13.43837 -13.40028 -12.77426 -12.55669 -12.50713 -12.36959 -12.28638 -11.82980 -11.65873 -11.61411 -11.23135 -11.15778 -10.98704 -10.54637 -10.24154 -10.16875 -9.43806 -9.04781 -8.18238 -6.29372 -0.61599 0.16195 0.65467 0.90832 1.18057 1.42834 1.43414 1.55931 1.69525 1.76134 2.10479 2.43488 2.44190 2.61320 2.67656 3.13273 3.16069 3.53371 3.62596 3.68420 3.81161 3.90780 4.08614 4.18380 4.24003 4.32141 4.42048 4.44974 4.57220 4.79732 4.87027 4.96657 4.98239 5.00509 5.18251 5.22225 5.29065 5.39575 5.42742 5.54583 5.63782 5.73250 5.86385 6.07817 6.23648 6.26798 6.52123 6.65699 6.70747 6.88940 7.16722 7.40466 8.93903 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019893 B = 0.001656 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.201267 B =16907.620524 C =18157.563253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.322 3.678 3 C -0.273 4.273 4 C 0.150 3.850 5 N -0.315 5.315 6 N -0.353 5.353 7 C 0.173 3.827 8 C -0.115 4.115 9 C -0.042 4.042 10 C -0.145 4.145 11 C 0.550 3.450 12 O -0.584 6.584 13 N -0.706 5.706 14 C 0.128 3.872 15 C -0.102 4.102 16 C 0.021 3.979 17 C -0.539 4.539 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.257 1.257 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.045 4.045 26 C -0.142 4.142 27 C 0.441 3.559 28 N -0.817 5.817 29 H 0.230 0.770 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.416 0.584 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.071 0.929 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.420 0.580 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.671 8.710 17.858 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C 0.009 3.991 3 C -0.294 4.294 4 C -0.042 4.042 5 N -0.130 5.130 6 N -0.133 5.133 7 C 0.080 3.920 8 C -0.135 4.135 9 C -0.061 4.061 10 C -0.148 4.148 11 C 0.339 3.661 12 O -0.465 6.465 13 N -0.358 5.358 14 C 0.004 3.996 15 C -0.140 4.140 16 C -0.017 4.017 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.180 1.180 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.064 4.064 26 C -0.163 4.163 27 C 0.206 3.794 28 N -0.366 5.366 29 H 0.246 0.754 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.254 0.746 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.186 0.814 41 H 0.182 0.818 42 H 0.255 0.745 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -23.259 9.268 18.192 30.949 hybrid contribution -0.103 -0.847 -1.325 1.576 sum -23.362 8.421 16.868 30.020 Atomic orbital electron populations 1.81349 1.12696 1.14216 1.08469 1.24351 0.90889 0.91062 0.92839 1.15142 0.84959 1.32946 0.96345 1.24415 0.87566 0.92578 0.99670 1.77440 1.21188 1.25211 0.89145 1.45450 1.01723 1.56322 1.09847 1.17767 0.85266 0.96082 0.92835 1.20944 0.91425 1.00148 1.01019 1.21206 0.98009 0.95028 0.91898 1.19954 0.94237 1.00583 1.00064 1.18656 0.87788 0.79832 0.79865 1.90781 1.36946 1.49462 1.69351 1.45853 1.17288 1.34899 1.37734 1.21286 0.86936 0.98475 0.92859 1.21604 0.99318 0.96347 0.96696 1.18966 0.93308 0.95355 0.94048 1.21726 0.99428 1.16785 1.19736 0.91336 1.26009 0.94898 0.99791 0.99420 1.70117 1.04960 1.43131 1.39334 0.85389 0.78785 0.78619 0.78177 1.18045 1.20750 1.20797 1.21414 0.89943 0.97354 0.97664 1.21099 1.00813 0.96820 0.97571 1.18226 0.84136 0.89852 0.87175 1.41992 1.13057 1.73543 1.08039 0.75411 0.83502 0.84378 0.74555 0.92956 0.93063 0.91108 0.90996 0.98921 0.98990 0.92907 0.81432 0.81843 0.74543 0.73522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -9.47 18.54 19.00 0.35 -9.12 16 2 C 0.32 4.55 15.57 88.33 1.38 5.92 16 3 C -0.27 -2.93 6.01 -21.01 -0.13 -3.05 16 4 C 0.15 1.40 11.98 85.70 1.03 2.43 16 5 N -0.31 -4.31 12.21 -56.21 -0.69 -5.00 16 6 N -0.35 -4.30 3.73 -183.51 -0.68 -4.99 16 7 C 0.17 2.11 6.38 38.29 0.24 2.35 16 8 C -0.12 -1.66 9.73 22.35 0.22 -1.44 16 9 C -0.04 -0.73 9.58 22.50 0.22 -0.51 16 10 C -0.14 -2.59 5.88 -20.08 -0.12 -2.70 16 11 C 0.55 14.37 7.77 86.73 0.67 15.04 16 12 O -0.58 -20.77 16.34 -3.97 -0.06 -20.84 16 13 N -0.71 -16.76 5.51 -466.17 -2.57 -19.33 16 14 C 0.13 4.14 5.67 86.38 0.49 4.63 16 15 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 16 C 0.02 1.04 4.97 29.85 0.15 1.19 16 17 C -0.54 -28.94 9.11 25.60 0.23 -28.71 16 18 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 21 Si 0.97 42.58 29.54 68.60 2.03 44.61 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 C -0.04 -0.45 9.53 22.51 0.21 -0.24 16 26 C -0.14 -1.14 8.40 22.35 0.19 -0.95 16 27 C 0.44 4.13 7.75 132.31 1.02 5.15 16 28 N -0.82 -2.64 8.64 -53.98 -0.47 -3.11 16 29 H 0.23 0.50 8.06 -2.91 -0.02 0.47 16 30 H 0.15 1.98 8.05 -2.91 -0.02 1.95 16 31 H 0.14 2.65 7.64 -2.91 -0.02 2.63 16 32 H 0.42 6.52 6.49 -92.71 -0.60 5.92 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 39 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.17 0.74 6.39 -2.91 -0.02 0.73 16 41 H 0.16 0.37 6.27 -2.91 -0.02 0.36 16 42 H 0.42 0.08 6.18 -92.71 -0.57 -0.49 16 43 H 0.43 0.47 8.68 -92.71 -0.81 -0.34 16 Total: -1.00 -78.27 380.83 3.75 -74.51 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -0.87 Total: 2.97 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 6.43 Total: -4.04 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -3.77 Total: -97.21 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.06 Total: -20.84 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -78.27 3.75 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505502022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.976 kcal (2) G-P(sol) polarization free energy of solvation -78.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds