Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36026 * 120.33815 * 2 1 4 4 C 1.40471 * 119.69646 * 180.02562 * 3 2 1 5 5 C 1.34951 * 120.29622 * 0.02562 * 4 3 2 6 6 N 1.36486 * 120.61551 * 359.97438 * 5 4 3 7 7 C 1.36827 * 132.57215 * 180.31163 * 6 5 4 8 8 C 1.35103 * 107.18366 * 180.10114 * 7 6 5 9 9 C 1.50693 * 125.69330 * 179.87746 * 8 7 6 10 10 C 1.50702 * 109.47154 * 124.71387 * 9 8 7 11 11 O 1.21293 * 120.00255 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72352 * 10 9 8 13 13 C 1.40163 * 120.00089 * 180.27440 * 12 10 9 14 14 C 1.40404 * 125.97288 * 359.72467 * 13 12 10 15 15 C 1.35232 * 107.86944 * 179.82485 * 14 13 12 16 16 N 1.34968 * 107.85994 * 0.42744 * 15 14 13 17 17 C 1.46497 * 125.97985 * 179.69200 * 16 15 14 18 18 C 1.50697 * 109.47552 * 125.01400 * 17 16 15 19 19 H 1.08008 * 119.99778 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00544 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99874 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00226 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47286 * 89.99773 * 22 20 18 24 24 H 1.48495 * 109.47137 * 209.99642 * 22 20 18 25 25 H 1.48507 * 109.47073 * 329.99522 * 22 20 18 26 26 N 1.31223 * 125.97159 * 180.02562 * 13 12 10 27 27 N 1.33520 * 108.61778 * 359.61052 * 8 7 6 28 28 C 1.32551 * 109.16127 * 0.24475 * 27 8 7 29 29 H 1.09001 * 109.47832 * 269.93459 * 1 2 3 30 30 H 1.09002 * 109.47005 * 29.93941 * 1 2 3 31 31 H 1.09001 * 109.46963 * 149.93594 * 1 2 3 32 32 H 1.08004 * 120.14625 * 0.04720 * 3 2 1 33 33 H 1.07996 * 119.85333 * 180.02562 * 4 3 2 34 34 H 1.08006 * 119.69366 * 180.02562 * 5 4 3 35 35 H 1.08007 * 126.41356 * 359.95431 * 7 6 5 36 36 H 1.09004 * 109.47069 * 4.71591 * 9 8 7 37 37 H 1.09000 * 109.47667 * 244.71780 * 9 8 7 38 38 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 39 39 H 1.08008 * 126.06400 * 359.97438 * 14 13 12 40 40 H 1.07996 * 126.07335 * 180.15566 * 15 14 13 41 41 H 1.08995 * 109.47696 * 245.02150 * 17 16 15 42 42 H 1.09012 * 109.46965 * 5.02001 * 17 16 15 43 43 H 0.96993 * 120.00131 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5986 1.1583 -0.0005 5 6 4.2663 -0.0145 -0.0016 6 7 3.5895 -1.1997 -0.0016 7 6 4.0054 -2.5032 0.0030 8 6 2.8971 -3.2758 -0.0020 9 6 2.8758 -4.7826 -0.0021 10 6 2.0545 -5.2735 1.1622 11 8 1.5369 -4.4780 1.9175 12 7 1.8900 -6.5964 1.3606 13 6 1.1213 -7.0529 2.4401 14 6 0.4739 -6.2475 3.3906 15 6 -0.1620 -7.0632 4.2617 16 7 0.0788 -8.3373 3.8870 17 6 -0.4163 -9.5406 4.5601 18 6 -1.1579 -10.4011 3.5699 19 1 -1.2508 -10.0835 2.5418 20 6 -1.7179 -11.5937 3.9763 21 7 -1.6044 -11.9806 5.2281 22 14 -2.6366 -12.6605 2.7487 23 1 -1.6888 -13.6091 2.1106 24 1 -3.6999 -13.4215 3.4525 25 1 -3.2514 -11.7990 1.7069 26 7 0.8856 -8.3079 2.7424 27 7 1.8238 -2.4816 -0.0008 28 6 2.2188 -1.2164 -0.0005 29 1 -0.3635 -0.0012 1.0276 30 1 -0.3633 0.8905 -0.5129 31 1 -0.3633 -0.8894 -0.5148 32 1 1.6619 2.1139 0.0008 33 1 4.1467 2.0888 -0.0001 34 1 5.3464 -0.0152 -0.0016 35 1 5.0283 -2.8498 0.0071 36 1 3.8944 -5.1604 0.0868 37 1 2.4359 -5.1398 -0.9333 38 1 2.3036 -7.2326 0.7564 39 1 0.4804 -5.1678 3.4193 40 1 -0.7535 -6.7509 5.1096 41 1 0.4248 -10.1002 4.9694 42 1 -1.0896 -9.2539 5.3682 43 1 -1.9986 -12.8194 5.5142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524227759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = 138.391563 kcal Electronic energy + Delta-G solvation = -27279.453315 eV Core-core repulsion = 23328.146309 eV Total energy + Delta-G solvation = -3951.307006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.03154 -40.56391 -39.17267 -37.75166 -34.80145 -34.56802 -33.32071 -32.36412 -30.95884 -30.37045 -29.23794 -28.13952 -27.25125 -26.46566 -23.38507 -23.03184 -22.50880 -21.70885 -20.71954 -19.95214 -19.39974 -17.81692 -17.25339 -16.82645 -16.57138 -16.46117 -15.95972 -15.86114 -15.27327 -15.15805 -14.50633 -14.33021 -14.29260 -13.84792 -13.74414 -13.48436 -13.19745 -12.99573 -12.70154 -12.57831 -12.24980 -12.15470 -12.06953 -11.97899 -11.78640 -11.64418 -10.99348 -10.85724 -10.82359 -10.33415 -10.22319 -10.15434 -9.90799 -9.47155 -9.42692 -8.87833 -8.60241 -8.04712 -8.00222 -7.38369 -6.21186 -4.25993 0.46443 1.03202 2.32814 2.47349 2.53851 2.95328 3.04131 3.26261 3.30781 3.31807 3.37709 3.80771 3.90639 3.97678 4.10920 4.35196 4.36953 4.47195 4.63633 4.81962 4.89621 4.98685 5.08190 5.13905 5.24830 5.28041 5.44854 5.46170 5.57848 5.63976 5.68359 5.83915 5.89019 6.01893 6.24287 6.35063 6.41608 6.58106 6.72309 6.84597 6.91660 7.09522 7.51076 7.66611 7.74815 7.75971 7.93964 8.10807 8.41830 8.70710 8.84642 9.39434 10.87513 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.001911 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.396582 B =14647.449887 C =14855.223432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.035 4.035 3 C -0.120 4.120 4 C -0.137 4.137 5 C 0.045 3.955 6 N -0.361 5.361 7 C -0.091 4.091 8 C 0.077 3.923 9 C -0.054 4.054 10 C 0.520 3.480 11 O -0.496 6.496 12 N -0.635 5.635 13 C 0.260 3.740 14 C -0.286 4.286 15 C 0.050 3.950 16 N -0.320 5.320 17 C 0.258 3.742 18 C -0.527 4.527 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 N -0.307 5.307 27 N -0.454 5.454 28 C 0.222 3.778 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.220 26.095 -12.133 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.037 4.037 3 C -0.144 4.144 4 C -0.158 4.158 5 C -0.077 4.077 6 N -0.033 5.033 7 C -0.222 4.222 8 C -0.057 4.057 9 C -0.096 4.096 10 C 0.305 3.695 11 O -0.367 6.367 12 N -0.283 5.283 13 C 0.007 3.993 14 C -0.318 4.318 15 C -0.100 4.100 16 N -0.102 5.102 17 C 0.141 3.859 18 C -0.565 4.565 19 H 0.087 0.913 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 N -0.138 5.138 27 N -0.173 5.173 28 C -0.021 4.021 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.200 0.800 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.245 0.755 39 H 0.176 0.824 40 H 0.184 0.816 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.206 24.909 -11.715 30.111 hybrid contribution 0.579 0.018 -0.530 0.785 sum 12.785 24.927 -12.245 30.574 Atomic orbital electron populations 1.20688 0.88862 1.03479 1.03317 1.19074 0.97065 0.88391 0.99184 1.20897 0.93706 0.97830 1.01959 1.20751 0.94804 0.97065 1.03201 1.21542 0.98515 0.83341 1.04296 1.42753 1.08832 1.05908 1.45762 1.22304 1.00840 0.80682 1.18420 1.20002 0.88385 0.94749 1.02527 1.19923 1.01955 0.89116 0.98559 1.20294 0.81585 0.81130 0.86531 1.90687 1.46350 1.54145 1.45553 1.42478 1.50666 1.07427 1.27759 1.19105 0.97151 0.91975 0.91059 1.21523 1.09743 1.01144 0.99347 1.22545 1.01526 0.84964 1.00981 1.49053 1.35558 1.06744 1.18873 1.19727 0.95026 0.78869 0.92284 1.21267 1.34278 1.04547 0.96443 0.91294 1.24951 0.96150 0.97379 0.95675 1.69918 1.45027 1.22902 1.15577 0.86321 0.79256 0.80082 0.80798 1.20352 1.21017 1.19709 1.77320 1.16281 1.16040 1.04139 1.70644 1.29065 0.97485 1.20123 1.20780 0.80064 0.94378 1.06925 0.90285 0.91032 0.90183 0.84214 0.83368 0.82210 0.79979 0.86965 0.86833 0.75530 0.82382 0.81614 0.93771 0.92592 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.03 36.00 0.36 -0.58 16 2 C -0.03 -0.35 5.90 -104.40 -0.62 -0.97 16 3 C -0.12 -0.86 9.72 -39.54 -0.38 -1.25 16 4 C -0.14 -0.81 9.99 -39.91 -0.40 -1.21 16 5 C 0.04 0.32 10.95 -16.65 -0.18 0.13 16 6 N -0.36 -3.80 2.94 -62.66 -0.18 -3.98 16 7 C -0.09 -0.91 11.63 -16.44 -0.19 -1.10 16 8 C 0.08 0.96 5.85 -82.98 -0.49 0.48 16 9 C -0.05 -0.55 6.26 -29.04 -0.18 -0.73 16 10 C 0.52 7.81 7.79 -10.98 -0.09 7.72 16 11 O -0.50 -9.44 12.69 5.55 0.07 -9.37 16 12 N -0.63 -9.98 5.45 -11.13 -0.06 -10.04 16 13 C 0.26 5.39 8.11 -154.38 -1.25 4.14 16 14 C -0.29 -5.97 9.60 -39.84 -0.38 -6.36 16 15 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 16 N -0.32 -7.67 3.67 -62.57 -0.23 -7.90 16 17 C 0.26 6.71 6.26 -5.20 -0.03 6.67 16 18 C -0.53 -14.90 9.24 -34.44 -0.32 -15.22 16 19 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.63 13.29 55.43 0.74 -24.90 16 22 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 26 N -0.31 -7.23 12.42 31.44 0.39 -6.83 16 27 N -0.45 -6.81 10.66 -9.01 -0.10 -6.91 16 28 C 0.22 2.86 7.52 -156.05 -1.17 1.68 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 34 H 0.16 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.11 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 5.03 8.82 -40.82 -0.36 4.67 16 39 H 0.16 3.29 5.92 -52.48 -0.31 2.98 16 40 H 0.17 2.86 8.06 -52.49 -0.42 2.43 16 41 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.43 8.07 -51.92 -0.42 1.01 16 43 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -37.80 375.64 -9.63 -47.43 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.28 Total: 4.35 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -5.62 Total: -4.13 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.56 Total: -60.56 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.07 Total: -9.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.80 -9.63 -47.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524227759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.818 kcal (2) G-P(sol) polarization free energy of solvation -37.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds