Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39756 * 125.83921 * 2 1 4 4 C 1.36104 * 107.82450 * 180.14165 * 3 2 1 5 5 N 1.39475 * 126.21033 * 179.84622 * 4 3 2 6 6 C 1.34774 * 120.00413 * 359.69477 * 5 4 3 7 7 O 1.21290 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00153 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.46810 * 180.02562 * 8 6 5 10 10 C 1.39687 * 119.09006 * 270.01980 * 9 8 6 11 11 C 1.35652 * 121.72754 * 179.97438 * 10 9 8 12 12 C 1.41133 * 119.53232 * 0.03925 * 11 10 9 13 13 C 1.38244 * 134.81064 * 180.02562 * 12 11 10 14 14 N 1.33991 * 107.90445 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.02386 * 179.97438 * 14 13 12 16 16 N 1.39958 * 109.95453 * 0.02562 * 14 13 12 17 17 C 1.32064 * 108.96017 * 359.97438 * 16 14 13 18 18 C 1.35629 * 119.09216 * 90.00451 * 9 8 6 19 19 N 1.35256 * 107.57226 * 359.58805 * 4 3 2 20 20 C 1.46498 * 126.04664 * 180.22575 * 19 4 3 21 21 C 1.50701 * 109.47163 * 90.00248 * 20 19 4 22 22 H 1.07996 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99910 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00055 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99952 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46753 * 90.00049 * 25 23 21 27 27 H 1.48497 * 109.47114 * 209.99830 * 25 23 21 28 28 H 1.48498 * 109.46905 * 330.00102 * 25 23 21 29 29 N 1.30848 * 125.83734 * 179.67397 * 2 1 3 30 30 H 1.08994 * 109.47210 * 270.29813 * 1 2 3 31 31 H 1.08994 * 109.46872 * 30.29697 * 1 2 3 32 32 H 1.08999 * 109.46671 * 150.30019 * 1 2 3 33 33 H 1.08001 * 126.08482 * 359.97438 * 3 2 1 34 34 H 0.97007 * 120.00097 * 179.68945 * 5 4 3 35 35 H 1.08997 * 109.46662 * 59.99890 * 8 6 5 36 36 H 1.08998 * 109.47118 * 299.99813 * 8 6 5 37 37 H 1.07999 * 119.13844 * 359.97438 * 10 9 8 38 38 H 1.07996 * 120.23190 * 180.02562 * 11 10 9 39 39 H 1.07994 * 126.05393 * 359.95169 * 13 12 11 40 40 H 1.08002 * 120.20640 * 0.03864 * 18 9 8 41 41 H 1.09001 * 109.46711 * 209.99634 * 20 19 4 42 42 H 1.09000 * 109.47539 * 329.99829 * 20 19 4 43 43 H 0.97005 * 120.00208 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6197 0.7120 -0.0032 5 7 4.7513 1.5274 -0.0073 6 6 4.6157 2.8683 -0.0146 7 8 3.5097 3.3660 -0.0181 8 6 5.8385 3.7493 -0.0185 9 6 5.4154 5.1956 -0.0259 10 6 5.2249 5.8412 -1.2499 11 6 4.8440 7.1413 -1.3191 12 6 4.6331 7.8687 -0.1281 13 6 4.2536 9.1647 0.1677 14 7 4.2192 9.2896 1.5013 15 1 3.9827 10.1002 1.9787 16 7 4.5761 8.0778 2.1039 17 6 4.8347 7.1897 1.1613 18 6 5.2298 5.8345 1.1560 19 7 3.6093 -0.6405 0.0041 20 6 4.7871 -1.5116 0.0085 21 6 5.1913 -1.8027 1.4308 22 1 4.6276 -1.3806 2.2496 23 6 6.2809 -2.6078 1.6868 24 7 6.9672 -3.1222 0.6898 25 14 6.7825 -2.9681 3.4498 26 1 6.0822 -4.1887 3.9240 27 1 8.2504 -3.1836 3.5127 28 1 6.4134 -1.8183 4.3142 29 7 2.2732 -1.0607 0.0060 30 1 -0.3633 0.0053 1.0276 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3632 -0.8927 -0.5092 33 1 1.9903 2.1597 -0.0004 34 1 5.6359 1.1294 -0.0048 35 1 6.4342 3.5399 -0.9069 36 1 6.4330 3.5496 0.8730 37 1 5.3851 5.2909 -2.1653 38 1 4.7033 7.6164 -2.2786 39 1 4.0256 9.9396 -0.5491 40 1 5.3848 5.3102 2.0873 41 1 4.5497 -2.4460 -0.5002 42 1 5.6083 -1.0150 -0.5083 43 1 7.7335 -3.6890 0.8698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527526764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = 134.110820 kcal Electronic energy + Delta-G solvation = -27820.153718 eV Core-core repulsion = 23868.661085 eV Total energy + Delta-G solvation = -3951.492633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43720 -40.79759 -39.32149 -37.41403 -34.64503 -33.71649 -32.65865 -32.16309 -32.00169 -29.34453 -28.99518 -28.68998 -27.42677 -26.00011 -23.90156 -22.86896 -22.06548 -21.00998 -20.78623 -19.65561 -19.18449 -18.28058 -17.00220 -16.86494 -16.65830 -16.31251 -15.62412 -15.50275 -15.06383 -14.82567 -14.56326 -14.28575 -14.09352 -13.88192 -13.79180 -13.07894 -12.81418 -12.74729 -12.46895 -12.27108 -12.07870 -11.88718 -11.83689 -11.71597 -11.63591 -11.53835 -11.05024 -10.87611 -10.48952 -10.46700 -10.34100 -10.29105 -9.87168 -9.79016 -9.43775 -8.79720 -8.70638 -7.87255 -7.77241 -7.38175 -6.31987 -4.40276 0.45013 1.63753 2.28221 2.33594 2.47134 2.90686 3.16859 3.18370 3.25325 3.30169 3.65628 3.69042 3.91992 4.06971 4.26331 4.36171 4.62591 4.87216 4.93534 5.01508 5.01609 5.10219 5.34408 5.38119 5.41013 5.49311 5.54715 5.69150 6.02117 6.07214 6.19826 6.24047 6.28897 6.32619 6.36420 6.48704 6.54789 6.70999 6.74689 6.82687 6.86943 7.07418 7.39423 7.56537 7.61651 7.68628 7.81847 7.97157 8.38093 8.65395 8.74732 9.27386 10.75092 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.002733 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.278360 B =10243.852110 C =11505.321790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.303 3.697 5 N -0.642 5.642 6 C 0.520 3.480 7 O -0.505 6.505 8 C -0.102 4.102 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.048 4.048 12 C -0.204 4.204 13 C 0.077 3.923 14 N -0.429 5.429 15 H 0.442 0.558 16 N -0.307 5.307 17 C 0.110 3.890 18 C -0.089 4.089 19 N -0.345 5.345 20 C 0.257 3.743 21 C -0.539 4.539 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 N -0.287 5.287 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.416 0.584 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.187 0.813 40 H 0.129 0.871 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 23.590 -4.697 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.081 3.919 5 N -0.289 5.289 6 C 0.306 3.694 7 O -0.378 6.378 8 C -0.142 4.142 9 C -0.024 4.024 10 C -0.152 4.152 11 C -0.068 4.068 12 C -0.214 4.214 13 C -0.080 4.080 14 N -0.129 5.129 15 H 0.286 0.714 16 N -0.136 5.136 17 C -0.044 4.044 18 C -0.110 4.110 19 N -0.131 5.131 20 C 0.139 3.861 21 C -0.578 4.578 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.197 1.197 29 N -0.112 5.112 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.178 0.822 34 H 0.253 0.747 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.204 0.796 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.141 22.716 -3.433 23.073 hybrid contribution 0.874 0.562 0.364 1.101 sum -1.267 23.278 -3.069 23.513 Atomic orbital electron populations 1.20012 0.87684 1.02261 1.02106 1.22023 0.96469 0.91107 1.01897 1.21268 0.89119 1.00408 1.21991 1.17935 0.88100 0.83297 1.02593 1.42829 1.08223 1.05620 1.72231 1.20448 0.91375 0.81127 0.76440 1.90669 1.26700 1.73599 1.46837 1.20722 0.96181 0.90938 1.06327 1.18714 0.97312 0.93372 0.92960 1.20393 1.02954 0.94775 0.97057 1.20137 0.97435 0.93730 0.95522 1.19657 1.13094 0.93525 0.95131 1.22663 1.00888 0.98035 0.86422 1.46310 1.49184 1.12449 1.04979 0.71398 1.77701 1.26918 0.90642 1.18312 1.20851 0.98187 0.94720 0.90631 1.19679 1.02861 0.90229 0.98255 1.49336 1.06492 1.02229 1.55034 1.19608 0.77864 0.89772 0.98859 1.21348 1.13236 1.31829 0.91379 0.91723 1.24931 0.95695 0.94883 0.98159 1.69917 1.19256 1.32521 1.31126 0.86362 0.77610 0.79097 0.83692 1.20243 1.20847 1.19651 1.77342 0.86175 1.21822 1.25894 0.91371 0.91197 0.91598 0.82174 0.74708 0.87070 0.87064 0.85893 0.85804 0.79645 0.85353 0.92614 0.93776 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.58 16 2 C 0.05 1.03 7.21 -82.44 -0.59 0.43 16 3 C -0.30 -6.20 9.58 -39.78 -0.38 -6.58 16 4 C 0.30 6.44 7.66 -153.16 -1.17 5.27 16 5 N -0.64 -11.02 5.42 -11.46 -0.06 -11.08 16 6 C 0.52 8.00 7.79 -10.98 -0.09 7.91 16 7 O -0.51 -9.32 13.16 5.55 0.07 -9.24 16 8 C -0.10 -1.09 5.77 -29.03 -0.17 -1.26 16 9 C -0.02 -0.22 4.33 -105.01 -0.45 -0.67 16 10 C -0.13 -1.42 9.51 -39.97 -0.38 -1.80 16 11 C -0.05 -0.47 10.09 -39.41 -0.40 -0.87 16 12 C -0.20 -2.21 6.33 -105.19 -0.67 -2.87 16 13 C 0.08 0.56 12.08 -16.61 -0.20 0.36 16 14 N -0.43 -3.46 7.18 30.84 0.22 -3.24 16 15 H 0.44 1.77 8.96 -182.70 -1.64 0.13 16 16 N -0.31 -3.94 12.70 33.25 0.42 -3.52 16 17 C 0.11 1.46 7.49 -83.05 -0.62 0.84 16 18 C -0.09 -1.16 9.65 -39.41 -0.38 -1.54 16 19 N -0.35 -8.16 3.60 -61.57 -0.22 -8.39 16 20 C 0.26 6.41 6.01 -5.19 -0.03 6.38 16 21 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 22 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 25 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 N -0.29 -6.79 12.56 33.65 0.42 -6.37 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.16 3.30 5.83 -52.49 -0.31 3.00 16 34 H 0.42 6.47 7.97 -40.82 -0.33 6.14 16 35 H 0.11 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.11 1.00 8.06 -51.93 -0.42 0.58 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.19 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.04 1.05 7.50 -51.93 -0.39 0.67 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -36.13 374.87 -9.78 -45.91 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.42 Total: 6.25 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -5.58 Total: -8.14 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 1.52 Total: -56.13 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.13 -9.78 -45.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527526764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.020 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds