Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.39756 * 125.83921 * 2 1 4 4 C 1.36104 * 107.82450 * 180.14165 * 3 2 1 5 5 N 1.39475 * 126.21033 * 179.84622 * 4 3 2 6 6 C 1.34774 * 120.00413 * 359.69477 * 5 4 3 7 7 O 1.21290 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00153 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.46810 * 180.02562 * 8 6 5 10 10 C 1.39687 * 119.09006 * 270.01980 * 9 8 6 11 11 C 1.35652 * 121.72754 * 179.97438 * 10 9 8 12 12 C 1.41133 * 119.53232 * 0.03925 * 11 10 9 13 13 C 1.38244 * 134.81064 * 180.02562 * 12 11 10 14 14 N 1.33991 * 107.90445 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.02386 * 179.97438 * 14 13 12 16 16 N 1.39958 * 109.95453 * 0.02562 * 14 13 12 17 17 C 1.32064 * 108.96017 * 359.97438 * 16 14 13 18 18 C 1.35629 * 119.09216 * 90.00451 * 9 8 6 19 19 N 1.35256 * 107.57226 * 359.58805 * 4 3 2 20 20 C 1.46498 * 126.04664 * 180.22575 * 19 4 3 21 21 C 1.50701 * 109.47163 * 90.00248 * 20 19 4 22 22 H 1.07996 * 120.00134 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99910 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00055 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99952 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46753 * 90.00049 * 25 23 21 27 27 H 1.48497 * 109.47114 * 209.99830 * 25 23 21 28 28 H 1.48498 * 109.46905 * 330.00102 * 25 23 21 29 29 N 1.30848 * 125.83734 * 179.67397 * 2 1 3 30 30 H 1.08994 * 109.47210 * 270.29813 * 1 2 3 31 31 H 1.08994 * 109.46872 * 30.29697 * 1 2 3 32 32 H 1.08999 * 109.46671 * 150.30019 * 1 2 3 33 33 H 1.08001 * 126.08482 * 359.97438 * 3 2 1 34 34 H 0.97007 * 120.00097 * 179.68945 * 5 4 3 35 35 H 1.08997 * 109.46662 * 59.99890 * 8 6 5 36 36 H 1.08998 * 109.47118 * 299.99813 * 8 6 5 37 37 H 1.07999 * 119.13844 * 359.97438 * 10 9 8 38 38 H 1.07996 * 120.23190 * 180.02562 * 11 10 9 39 39 H 1.07994 * 126.05393 * 359.95169 * 13 12 11 40 40 H 1.08002 * 120.20640 * 0.03864 * 18 9 8 41 41 H 1.09001 * 109.46711 * 209.99634 * 20 19 4 42 42 H 1.09000 * 109.47539 * 329.99829 * 20 19 4 43 43 H 0.97005 * 120.00208 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6197 0.7120 -0.0032 5 7 4.7513 1.5274 -0.0073 6 6 4.6157 2.8683 -0.0146 7 8 3.5097 3.3660 -0.0181 8 6 5.8385 3.7493 -0.0185 9 6 5.4154 5.1956 -0.0259 10 6 5.2249 5.8412 -1.2499 11 6 4.8440 7.1413 -1.3191 12 6 4.6331 7.8687 -0.1281 13 6 4.2536 9.1647 0.1677 14 7 4.2192 9.2896 1.5013 15 1 3.9827 10.1002 1.9787 16 7 4.5761 8.0778 2.1039 17 6 4.8347 7.1897 1.1613 18 6 5.2298 5.8345 1.1560 19 7 3.6093 -0.6405 0.0041 20 6 4.7871 -1.5116 0.0085 21 6 5.1913 -1.8027 1.4308 22 1 4.6276 -1.3806 2.2496 23 6 6.2809 -2.6078 1.6868 24 7 6.9672 -3.1222 0.6898 25 14 6.7825 -2.9681 3.4498 26 1 6.0822 -4.1887 3.9240 27 1 8.2504 -3.1836 3.5127 28 1 6.4134 -1.8183 4.3142 29 7 2.2732 -1.0607 0.0060 30 1 -0.3633 0.0053 1.0276 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3632 -0.8927 -0.5092 33 1 1.9903 2.1597 -0.0004 34 1 5.6359 1.1294 -0.0048 35 1 6.4342 3.5399 -0.9069 36 1 6.4330 3.5496 0.8730 37 1 5.3851 5.2909 -2.1653 38 1 4.7033 7.6164 -2.2786 39 1 4.0256 9.9396 -0.5491 40 1 5.3848 5.3102 2.0873 41 1 4.5497 -2.4460 -0.5002 42 1 5.6083 -1.0150 -0.5083 43 1 7.7335 -3.6890 0.8698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527526764.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = 110.229937 kcal Electronic energy + Delta-G solvation = -27821.189271 eV Core-core repulsion = 23868.661085 eV Total energy + Delta-G solvation = -3952.528186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.41761 -42.12674 -40.64661 -38.28389 -36.21129 -35.54359 -33.82649 -33.47345 -32.92474 -30.84741 -30.16906 -29.69887 -28.62806 -27.79315 -24.93663 -24.54239 -23.16648 -22.04121 -21.60365 -21.19216 -20.63095 -18.97112 -18.86247 -18.35470 -17.79608 -17.54922 -16.74936 -16.72995 -16.36058 -15.94933 -15.82333 -15.76035 -15.18208 -15.10733 -14.81216 -14.52271 -14.39256 -14.02453 -13.79728 -13.61942 -13.37349 -13.14486 -13.02137 -12.88426 -12.72973 -12.71390 -12.62187 -12.43241 -12.28820 -11.88323 -11.66260 -11.43680 -11.26079 -11.22075 -10.87527 -10.75624 -9.61149 -9.59286 -9.02917 -8.54806 -8.35655 -6.52705 -0.28057 0.82870 0.84841 1.36515 1.37897 1.41625 1.49639 1.56328 1.68710 1.91634 2.09940 2.24774 2.37653 2.91840 2.94859 3.32475 3.62907 3.77717 3.85640 3.94716 4.17090 4.28987 4.35624 4.40576 4.59690 4.63772 4.65449 4.72439 4.75244 4.80603 4.85971 4.88995 4.95014 4.97885 5.23332 5.24311 5.26743 5.49105 5.52195 5.60231 5.74050 5.78380 5.98154 6.00173 6.19935 6.33061 6.34366 6.59063 6.64178 7.01693 7.08718 7.19473 8.70773 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.002733 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.278360 B =10243.852110 C =11505.321790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.310 4.310 4 C 0.303 3.697 5 N -0.640 5.640 6 C 0.522 3.478 7 O -0.535 6.535 8 C -0.093 4.093 9 C -0.016 4.016 10 C -0.163 4.163 11 C -0.033 4.033 12 C -0.240 4.240 13 C 0.116 3.884 14 N -0.417 5.417 15 H 0.459 0.541 16 N -0.361 5.361 17 C 0.082 3.918 18 C -0.126 4.126 19 N -0.367 5.367 20 C 0.272 3.728 21 C -0.555 4.555 22 H 0.045 0.955 23 C 0.029 3.971 24 N -0.913 5.913 25 Si 0.967 3.033 26 H -0.278 1.278 27 H -0.268 1.268 28 H -0.272 1.272 29 N -0.333 5.333 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.423 0.577 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.243 0.757 40 H 0.116 0.884 41 H 0.026 0.974 42 H 0.052 0.948 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 26.097 -5.494 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.342 4.342 4 C 0.080 3.920 5 N -0.289 5.289 6 C 0.311 3.689 7 O -0.410 6.410 8 C -0.132 4.132 9 C -0.021 4.021 10 C -0.182 4.182 11 C -0.053 4.053 12 C -0.249 4.249 13 C -0.043 4.043 14 N -0.119 5.119 15 H 0.306 0.694 16 N -0.191 5.191 17 C -0.070 4.070 18 C -0.147 4.147 19 N -0.153 5.153 20 C 0.154 3.846 21 C -0.593 4.593 22 H 0.063 0.937 23 C -0.173 4.173 24 N -0.551 5.551 25 Si 0.791 3.209 26 H -0.203 1.203 27 H -0.192 1.192 28 H -0.197 1.197 29 N -0.158 5.158 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.182 0.818 34 H 0.261 0.739 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.176 0.824 39 H 0.259 0.741 40 H 0.134 0.866 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.059 25.247 -4.214 25.679 hybrid contribution 0.763 -0.009 0.552 0.942 sum -1.296 25.239 -3.661 25.536 Atomic orbital electron populations 1.20211 0.84073 1.04008 1.03584 1.22867 0.98683 0.90140 0.99120 1.21449 0.89257 1.00653 1.22846 1.18330 0.89696 0.82802 1.01157 1.43052 1.07488 1.05985 1.72333 1.21316 0.92447 0.80455 0.74668 1.90641 1.28437 1.73843 1.48029 1.20816 0.94214 0.89385 1.08776 1.18866 0.96521 0.93516 0.93190 1.20649 1.04734 0.95757 0.97077 1.20563 0.94728 0.93317 0.96641 1.20119 1.15140 0.95062 0.94620 1.23540 0.96512 0.97738 0.86524 1.46381 1.47826 1.11992 1.05665 0.69372 1.77609 1.29570 0.92294 1.19586 1.21099 0.98593 0.95046 0.92240 1.19758 1.05454 0.91090 0.98405 1.49161 1.06265 1.02926 1.56944 1.19231 0.78668 0.89024 0.97719 1.21398 1.13659 1.32625 0.91665 0.93657 1.25643 0.95378 0.94305 1.01927 1.69982 1.19555 1.32651 1.32872 0.85421 0.77926 0.78545 0.78984 1.20326 1.19212 1.19685 1.77288 0.86521 1.23583 1.28385 0.89878 0.88716 0.90566 0.81789 0.73902 0.83666 0.85337 0.84259 0.82362 0.74064 0.86569 0.95546 0.93053 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 10.44 71.24 0.74 -1.03 16 2 C 0.06 2.36 7.21 43.08 0.31 2.67 16 3 C -0.31 -13.14 9.58 22.14 0.21 -12.92 16 4 C 0.30 13.14 7.66 131.32 1.01 14.14 16 5 N -0.64 -22.20 5.42 -308.57 -1.67 -23.87 16 6 C 0.52 16.04 7.79 87.66 0.68 16.72 16 7 O -0.53 -19.92 13.16 -3.06 -0.04 -19.96 16 8 C -0.09 -1.91 5.77 29.10 0.17 -1.74 16 9 C -0.02 -0.38 4.33 -20.12 -0.09 -0.46 16 10 C -0.16 -3.26 9.51 22.02 0.21 -3.05 16 11 C -0.03 -0.56 10.09 22.38 0.23 -0.33 16 12 C -0.24 -4.71 6.33 -20.23 -0.13 -4.84 16 13 C 0.12 1.26 12.08 84.36 1.02 2.28 16 14 N -0.42 -5.90 7.18 -56.35 -0.40 -6.30 16 15 H 0.46 2.61 8.96 -213.41 -1.91 0.70 16 16 N -0.36 -9.34 12.70 -48.70 -0.62 -9.96 16 17 C 0.08 2.22 7.49 42.16 0.32 2.54 16 18 C -0.13 -3.43 9.65 22.38 0.22 -3.21 16 19 N -0.37 -17.93 3.60 -348.72 -1.26 -19.19 16 20 C 0.27 14.10 6.01 85.63 0.51 14.62 16 21 C -0.56 -30.60 9.39 25.60 0.24 -30.36 16 22 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 23 C 0.03 1.56 5.46 84.66 0.46 2.02 16 24 N -0.91 -49.94 13.29 21.45 0.28 -49.65 16 25 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 N -0.33 -16.16 12.56 -47.44 -0.60 -16.76 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.16 6.81 5.83 -2.91 -0.02 6.79 16 34 H 0.42 13.23 7.97 -92.70 -0.74 12.50 16 35 H 0.15 2.01 8.07 -2.39 -0.02 1.99 16 36 H 0.13 2.23 8.06 -2.39 -0.02 2.21 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 38 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.24 -0.29 8.06 -2.91 -0.02 -0.32 16 40 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 2.53 7.50 -2.39 -0.02 2.51 16 43 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -82.31 374.87 2.27 -80.04 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -1.57 Total: 24.09 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 6.11 Total: -2.95 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -4.26 Total: -125.73 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.04 Total: -19.96 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -82.31 2.27 -80.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527526764.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.272 kcal (2) G-P(sol) polarization free energy of solvation -82.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds