Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39735 * 125.78230 * 2 1 4 4 C 1.36140 * 107.85858 * 180.16725 * 3 2 1 5 5 N 1.39387 * 126.26073 * 179.84790 * 4 3 2 6 6 C 1.34774 * 120.00020 * 359.69278 * 5 4 3 7 7 O 1.21627 * 120.00053 * 359.97438 * 6 5 4 8 8 C 1.47349 * 120.00110 * 179.97438 * 6 5 4 9 9 N 1.31590 * 126.82299 * 0.02562 * 8 6 5 10 10 N 1.28385 * 111.96210 * 179.97438 * 9 8 6 11 11 C 1.46498 * 124.36780 * 179.97438 * 10 9 8 12 12 C 1.37043 * 111.25891 * 359.97438 * 10 9 8 13 13 C 1.39125 * 134.72182 * 180.02562 * 12 10 9 14 14 C 1.36686 * 119.78553 * 180.02562 * 13 12 10 15 15 C 1.38897 * 120.89320 * 359.97438 * 14 13 12 16 16 C 1.36724 * 120.52130 * 0.02562 * 15 14 13 17 17 C 1.39184 * 119.51258 * 0.02562 * 16 15 14 18 18 N 1.35806 * 107.47605 * 359.58298 * 4 3 2 19 19 C 1.46501 * 126.09263 * 180.23951 * 18 4 3 20 20 C 1.50697 * 109.46810 * 90.00681 * 19 18 4 21 21 H 1.08002 * 120.00796 * 359.97438 * 20 19 18 22 22 C 1.37887 * 120.00148 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99300 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00273 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46942 * 90.00172 * 24 22 20 26 26 H 1.48498 * 109.47030 * 209.99743 * 24 22 20 27 27 H 1.48504 * 109.47213 * 330.00212 * 24 22 20 28 28 N 1.30834 * 125.77842 * 179.70202 * 2 1 3 29 29 H 1.08996 * 109.47491 * 270.27776 * 1 2 3 30 30 H 1.09004 * 109.46770 * 30.27416 * 1 2 3 31 31 H 1.08998 * 109.47400 * 150.27367 * 1 2 3 32 32 H 1.08000 * 126.06586 * 0.02562 * 3 2 1 33 33 H 0.96997 * 119.99436 * 179.68530 * 5 4 3 34 34 H 1.08995 * 109.47238 * 270.02385 * 11 10 9 35 35 H 1.09007 * 109.47195 * 30.02589 * 11 10 9 36 36 H 1.08997 * 109.47024 * 150.02040 * 11 10 9 37 37 H 1.07996 * 120.10990 * 359.72027 * 13 12 10 38 38 H 1.07998 * 119.55591 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.74210 * 179.97438 * 15 14 13 40 40 H 1.08003 * 120.24410 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.46914 * 210.00048 * 19 18 4 42 42 H 1.08994 * 109.47565 * 330.00349 * 19 18 4 43 43 H 0.97001 * 119.99936 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6193 0.7146 -0.0038 5 7 4.7496 1.5303 -0.0081 6 6 4.6130 2.8711 -0.0150 7 8 3.5035 3.3693 -0.0180 8 6 5.8079 3.7334 -0.0189 9 7 7.0638 3.3407 -0.0169 10 7 7.8774 4.3339 -0.0220 11 6 9.3369 4.2074 -0.0208 12 6 7.2042 5.5276 -0.0288 13 6 7.5844 6.8659 -0.0364 14 6 6.6288 7.8432 -0.0414 15 6 5.2780 7.5198 -0.0395 16 6 4.8769 6.2128 -0.0320 17 6 5.8338 5.2020 -0.0258 18 7 3.6087 -0.6434 0.0034 19 6 4.7858 -1.5156 0.0074 20 6 5.1898 -1.8073 1.4296 21 1 4.6266 -1.3849 2.2486 22 6 6.2788 -2.6135 1.6855 23 7 6.9644 -3.1283 0.6882 24 14 6.7801 -2.9745 3.4483 25 1 6.0788 -4.1947 3.9224 26 1 8.2478 -3.1914 3.5110 27 1 6.4121 -1.8246 4.3130 28 7 2.2719 -1.0614 0.0055 29 1 -0.3634 0.0050 1.0276 30 1 -0.3633 0.8876 -0.5181 31 1 -0.3634 -0.8924 -0.5096 32 1 1.9875 2.1598 0.0004 33 1 5.6344 1.1328 -0.0059 34 1 9.6985 4.1812 1.0071 35 1 9.6222 3.2867 -0.5300 36 1 9.7759 5.0600 -0.5388 37 1 8.6311 7.1317 -0.0334 38 1 6.9281 8.8809 -0.0469 39 1 4.5387 8.3071 -0.0431 40 1 3.8254 5.9664 -0.0302 41 1 4.5476 -2.4497 -0.5014 42 1 5.6074 -1.0196 -0.5093 43 1 7.7303 -3.6957 0.8681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528141161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = 118.559607 kcal Electronic energy + Delta-G solvation = -28392.562403 eV Core-core repulsion = 24440.395419 eV Total energy + Delta-G solvation = -3952.166984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.61140 -42.38449 -40.42028 -38.77264 -36.32392 -35.65577 -34.69709 -33.84495 -31.53771 -31.22715 -30.84148 -30.11134 -28.19759 -27.80930 -25.24384 -24.72417 -23.90972 -23.14388 -22.05630 -21.29810 -20.53855 -18.98276 -18.84557 -18.40414 -17.99591 -17.49583 -17.08461 -16.72674 -16.54930 -16.24636 -16.07562 -15.55805 -15.53951 -15.08058 -14.73947 -14.57830 -14.44543 -14.06064 -13.98371 -13.61434 -13.58613 -13.41978 -13.14129 -12.98510 -12.91245 -12.86001 -12.74259 -12.33668 -12.23390 -12.04293 -12.01324 -11.72908 -11.55524 -11.16339 -11.05947 -10.79187 -9.81133 -9.66747 -9.21027 -8.95892 -8.39146 -6.56716 -0.34193 0.30825 0.61722 1.08806 1.18201 1.32896 1.34543 1.43023 1.46784 1.84844 2.11349 2.19051 2.31861 2.79688 2.90802 2.99490 3.36171 3.54681 3.80196 4.00796 4.09966 4.19540 4.31464 4.36017 4.41315 4.45488 4.57963 4.62377 4.68908 4.75340 4.77928 4.81422 4.91496 4.94197 5.02377 5.17784 5.20062 5.22327 5.45664 5.47867 5.56902 5.67771 5.73441 5.94229 5.96743 6.02622 6.17431 6.51061 6.64646 6.83014 6.97710 7.14817 8.67789 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.003726 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.179446 B = 7512.400959 C = 9890.021954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.061 3.939 3 C -0.299 4.299 4 C 0.295 3.705 5 N -0.630 5.630 6 C 0.616 3.384 7 O -0.521 6.521 8 C -0.038 4.038 9 N -0.216 5.216 10 N -0.303 5.303 11 C 0.078 3.922 12 C 0.049 3.951 13 C -0.109 4.109 14 C -0.080 4.080 15 C -0.126 4.126 16 C -0.076 4.076 17 C -0.129 4.129 18 N -0.369 5.369 19 C 0.274 3.726 20 C -0.558 4.558 21 H 0.046 0.954 22 C 0.027 3.973 23 N -0.913 5.913 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.266 1.266 27 H -0.274 1.274 28 N -0.325 5.325 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.172 0.828 33 H 0.420 0.580 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 24.433 -2.318 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 C -0.331 4.331 4 C 0.073 3.927 5 N -0.276 5.276 6 C 0.403 3.597 7 O -0.394 6.394 8 C -0.205 4.205 9 N -0.049 5.049 10 N -0.098 5.098 11 C -0.060 4.060 12 C -0.063 4.063 13 C -0.130 4.130 14 C -0.100 4.100 15 C -0.145 4.145 16 C -0.096 4.096 17 C -0.136 4.136 18 N -0.155 5.155 19 C 0.155 3.845 20 C -0.596 4.596 21 H 0.065 0.935 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.794 3.206 25 H -0.197 1.197 26 H -0.191 1.191 27 H -0.199 1.199 28 N -0.149 5.149 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.189 0.811 33 H 0.258 0.742 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.183 0.817 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.143 0.857 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.104 22.363 -2.377 23.061 hybrid contribution 0.514 0.074 0.730 0.896 sum 5.618 22.437 -1.647 23.188 Atomic orbital electron populations 1.20243 0.83524 1.04214 1.03843 1.22906 0.98860 0.89767 0.98915 1.21501 0.88698 1.01086 1.21814 1.18377 0.89093 0.82905 1.02275 1.42640 1.08079 1.05479 1.71415 1.16773 0.87459 0.79735 0.75755 1.90671 1.25323 1.73952 1.49427 1.22097 0.89910 0.92578 1.15926 1.72895 1.00957 1.18485 1.12533 1.45665 1.08402 1.00584 1.55142 1.22621 0.70236 1.07162 1.06028 1.19571 0.90526 0.90229 1.05936 1.20279 1.02539 0.86484 1.03671 1.21261 0.91693 1.00838 0.96212 1.21255 0.97738 0.95255 1.00249 1.20504 0.98909 0.92093 0.98094 1.19622 0.94747 0.90843 1.08386 1.49310 1.06397 1.02543 1.57217 1.19193 0.78554 0.88885 0.97852 1.21412 1.13989 1.32647 0.91549 0.93537 1.25710 0.95235 0.94251 1.02279 1.69995 1.19548 1.32563 1.32997 0.85375 0.78020 0.78618 0.78585 1.19730 1.19085 1.19918 1.77276 0.86173 1.23625 1.27875 0.89546 0.88395 0.90508 0.81099 0.74249 0.88358 0.88230 0.85185 0.81687 0.80938 0.82457 0.85671 0.95131 0.94140 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.23 0.74 -0.99 16 2 C 0.06 2.55 7.20 43.07 0.31 2.86 16 3 C -0.30 -13.05 9.58 22.14 0.21 -12.84 16 4 C 0.30 13.89 7.68 131.18 1.01 14.90 16 5 N -0.63 -26.71 5.41 -311.20 -1.68 -28.40 16 6 C 0.62 24.23 7.78 86.64 0.67 24.90 16 7 O -0.52 -21.33 13.53 -4.12 -0.06 -21.38 16 8 C -0.04 -1.31 7.32 43.85 0.32 -0.99 16 9 N -0.22 -6.82 11.52 -44.90 -0.52 -7.34 16 10 N -0.30 -7.11 3.74 -361.14 -1.35 -8.46 16 11 C 0.08 0.95 11.24 127.77 1.44 2.38 16 12 C 0.05 1.10 6.85 39.18 0.27 1.37 16 13 C -0.11 -1.47 9.94 22.12 0.22 -1.25 16 14 C -0.08 -0.91 9.96 22.06 0.22 -0.69 16 15 C -0.13 -1.97 9.98 22.07 0.22 -1.75 16 16 C -0.08 -1.85 9.87 22.14 0.22 -1.63 16 17 C -0.13 -3.72 6.34 -20.14 -0.13 -3.85 16 18 N -0.37 -19.01 3.62 -348.32 -1.26 -20.27 16 19 C 0.27 15.10 6.02 85.63 0.52 15.62 16 20 C -0.56 -32.29 9.39 25.60 0.24 -32.05 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 22 C 0.03 1.50 5.46 84.66 0.46 1.96 16 23 N -0.91 -51.92 13.29 21.45 0.28 -51.64 16 24 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 28 N -0.32 -16.11 12.56 -47.47 -0.60 -16.71 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.17 7.09 5.82 -2.91 -0.02 7.07 16 33 H 0.42 17.69 7.73 -92.71 -0.72 16.98 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.13 0.60 8.09 -2.39 -0.02 0.58 16 37 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 39 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.13 3.27 7.65 -2.91 -0.02 3.25 16 41 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.04 2.21 7.52 -2.39 -0.02 2.19 16 43 H 0.28 14.52 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -78.07 375.53 4.14 -73.94 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.35 Total: 26.39 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.94 Total: 7.97 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -5.12 Total: -132.82 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.38 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -78.07 4.14 -73.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528141161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.496 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds