Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40088 * 125.97492 * 180.14682 * 4 3 2 6 6 C 1.34773 * 119.99960 * 0.29654 * 5 4 3 7 7 O 1.21628 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.47367 * 119.99910 * 180.02562 * 6 5 4 9 9 N 1.31578 * 126.82623 * 359.68333 * 8 6 5 10 10 N 1.28386 * 111.96803 * 179.80874 * 9 8 6 11 11 C 1.46494 * 124.37223 * 180.17839 * 10 9 8 12 12 C 1.37050 * 111.25361 * 0.47777 * 10 9 8 13 13 C 1.39127 * 134.71964 * 179.68210 * 12 10 9 14 14 C 1.36689 * 119.78058 * 180.02562 * 13 12 10 15 15 C 1.38892 * 120.89447 * 0.02562 * 14 13 12 16 16 C 1.36722 * 120.52405 * 359.97438 * 15 14 13 17 17 C 1.39186 * 119.51162 * 0.02562 * 16 15 14 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46498 * 125.97410 * 359.96275 * 19 2 1 21 21 C 1.50702 * 109.47036 * 90.00121 * 20 19 2 22 22 H 1.08000 * 120.00135 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00214 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99653 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47144 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47003 * 120.00274 * 25 23 21 28 28 H 1.48501 * 109.46815 * 240.00122 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07999 * 126.06341 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99809 * 180.29449 * 5 4 3 34 34 H 1.08996 * 109.47228 * 270.33648 * 11 10 9 35 35 H 1.09001 * 109.47302 * 30.33452 * 11 10 9 36 36 H 1.08997 * 109.47166 * 150.33879 * 11 10 9 37 37 H 1.07994 * 120.11065 * 0.02562 * 13 12 10 38 38 H 1.07994 * 119.55189 * 179.97438 * 14 13 12 39 39 H 1.08003 * 119.73963 * 179.97438 * 15 14 13 40 40 H 1.08006 * 120.24571 * 180.02562 * 16 15 14 41 41 H 1.08993 * 109.47060 * 209.99617 * 20 19 2 42 42 H 1.08996 * 109.47079 * 330.00441 * 20 19 2 43 43 H 0.96998 * 120.00028 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0076 6 6 4.6363 2.8151 0.0144 7 8 3.5267 3.3132 0.0166 8 6 5.8312 3.6777 0.0181 9 7 7.0871 3.2853 0.0213 10 7 7.9006 4.2785 0.0200 11 6 9.3600 4.1522 0.0191 12 6 7.2272 5.4722 0.0264 13 6 7.6073 6.8105 0.0336 14 6 6.6515 7.7877 0.0393 15 6 5.3008 7.4641 0.0385 16 6 4.8999 6.1570 0.0315 17 6 5.8568 5.1463 0.0256 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0127 21 6 1.6943 -2.9553 -1.4359 22 1 1.9099 -2.2834 -2.2535 23 6 1.2767 -4.2437 -1.6941 24 7 1.0137 -5.0617 -0.6985 25 14 1.0845 -4.8273 -3.4582 26 1 1.4395 -3.7236 -4.3862 27 1 1.9839 -5.9845 -3.6974 28 1 -0.3232 -5.2375 -3.6932 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 0.0004 33 1 5.6579 1.0771 0.0055 34 1 9.7222 4.1155 1.0464 35 1 9.6452 3.2368 -0.4995 36 1 9.7987 5.0101 -0.4903 37 1 8.6540 7.0764 0.0347 38 1 6.9507 8.8253 0.0453 39 1 4.5614 8.2513 0.0435 40 1 3.8483 5.9105 0.0305 41 1 2.5848 -3.1072 0.4975 42 1 0.8915 -2.5584 0.5012 43 1 0.7196 -5.9679 -0.8801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528945331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = 140.908599 kcal Electronic energy + Delta-G solvation = -27683.500718 eV Core-core repulsion = 23732.302859 eV Total energy + Delta-G solvation = -3951.197859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75943 -40.65316 -39.04430 -38.07443 -34.82118 -33.95313 -33.31071 -31.43062 -30.87875 -30.81810 -30.38975 -27.90808 -26.52803 -26.29346 -24.31391 -23.33882 -22.60591 -22.25264 -20.70390 -19.73861 -19.21345 -17.78672 -17.46500 -16.68461 -16.63245 -16.14324 -16.03317 -15.54801 -15.27056 -15.01498 -14.48930 -14.43713 -14.24599 -13.98883 -13.80024 -13.39875 -13.19575 -12.96820 -12.46509 -12.32872 -12.29827 -12.25289 -12.10397 -11.67743 -11.48516 -11.39372 -11.17845 -11.04087 -10.84464 -10.42397 -10.25790 -10.23186 -10.00849 -9.66798 -9.49147 -9.06278 -8.63305 -8.30348 -7.90298 -7.42387 -6.24008 -4.31434 0.54828 1.07239 1.63468 2.00667 2.70544 2.76761 3.11275 3.21660 3.29555 3.36078 3.49733 3.76795 3.85328 4.00409 4.10490 4.31900 4.51721 4.62350 4.67696 4.70494 4.86562 4.95823 5.09663 5.10314 5.19873 5.37199 5.48171 5.66127 5.75277 5.91828 5.98004 6.12950 6.13657 6.24427 6.26258 6.37374 6.49856 6.57906 6.59659 6.75418 6.95528 7.07730 7.43846 7.50855 7.69106 7.72781 7.90789 8.07763 8.23971 8.67475 8.77608 9.34942 10.83271 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.002247 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.193602 B =12459.966536 C =13180.803609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.092 3.908 3 C -0.288 4.288 4 C 0.264 3.736 5 N -0.617 5.617 6 C 0.613 3.387 7 O -0.505 6.505 8 C 0.007 3.993 9 N -0.207 5.207 10 N -0.316 5.316 11 C 0.093 3.907 12 C 0.064 3.936 13 C -0.120 4.120 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.040 4.040 17 C -0.106 4.106 18 N -0.317 5.317 19 N -0.316 5.316 20 C 0.258 3.742 21 C -0.535 4.535 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.416 0.584 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.141 0.859 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.514 24.514 2.920 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.319 4.319 4 C 0.012 3.988 5 N -0.264 5.264 6 C 0.397 3.603 7 O -0.376 6.376 8 C -0.163 4.163 9 N -0.037 5.037 10 N -0.109 5.109 11 C -0.048 4.048 12 C -0.048 4.048 13 C -0.142 4.142 14 C -0.105 4.105 15 C -0.161 4.161 16 C -0.061 4.061 17 C -0.113 4.113 18 N -0.148 5.148 19 N -0.099 5.099 20 C 0.140 3.860 21 C -0.573 4.573 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.252 0.748 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.185 22.522 2.963 26.781 hybrid contribution -0.187 0.564 -0.923 1.098 sum 13.998 23.086 2.041 27.075 Atomic orbital electron populations 1.20380 0.87858 1.03890 1.02547 1.21065 0.94936 0.87098 1.00874 1.21252 0.89609 0.99865 1.21198 1.18908 0.86961 0.89586 1.03378 1.42189 1.08093 1.04530 1.71566 1.16447 0.86446 0.80453 0.76940 1.90744 1.24378 1.73922 1.48561 1.22511 0.90325 0.91755 1.11710 1.72900 1.00796 1.16999 1.12965 1.45142 1.07073 1.01005 1.57710 1.22119 0.72990 1.05318 1.04323 1.19166 0.91515 0.89026 1.05077 1.19739 1.00183 0.88254 1.05986 1.20744 0.92707 0.98950 0.98067 1.20860 0.96038 0.96187 1.03029 1.20462 0.99762 0.90847 0.94995 1.19383 0.92776 0.91840 1.07302 1.77278 0.99926 1.08405 1.29179 1.49014 1.00938 1.07821 1.52077 1.19700 0.96003 0.71329 0.98950 1.21374 1.46612 0.97962 0.91400 0.91660 1.24933 0.94715 0.96055 0.98134 1.69930 1.45028 1.06944 1.31069 0.86304 0.77847 0.78789 0.83778 1.19558 1.20676 1.20646 0.91062 0.89908 0.90571 0.82212 0.74811 0.89939 0.88338 0.88882 0.85594 0.85154 0.85164 0.84099 0.92968 0.92733 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -6.06 9.52 -39.83 -0.38 -6.44 16 4 C 0.26 5.63 8.11 -154.44 -1.25 4.37 16 5 N -0.62 -10.84 5.44 -12.12 -0.07 -10.91 16 6 C 0.61 10.31 7.78 -12.55 -0.10 10.21 16 7 O -0.50 -9.33 13.52 5.25 0.07 -9.26 16 8 C 0.01 0.11 7.32 -80.76 -0.59 -0.48 16 9 N -0.21 -2.65 11.52 34.46 0.40 -2.25 16 10 N -0.32 -3.21 3.74 -65.50 -0.24 -3.46 16 11 C 0.09 0.47 11.24 59.84 0.67 1.14 16 12 C 0.06 0.67 6.85 -84.21 -0.58 0.10 16 13 C -0.12 -0.92 9.94 -39.81 -0.40 -1.32 16 14 C -0.08 -0.59 9.96 -39.90 -0.40 -0.99 16 15 C -0.14 -1.18 9.98 -39.89 -0.40 -1.58 16 16 C -0.04 -0.45 9.87 -39.78 -0.39 -0.85 16 17 C -0.11 -1.36 6.34 -105.05 -0.67 -2.03 16 18 N -0.32 -7.56 12.59 31.43 0.40 -7.17 16 19 N -0.32 -7.64 3.59 -58.33 -0.21 -7.85 16 20 C 0.26 6.69 5.81 -5.19 -0.03 6.66 16 21 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 22 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 25 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 33 H 0.42 6.47 8.56 -40.82 -0.35 6.12 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.24 8.09 -51.93 -0.42 -0.18 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.14 1.62 7.65 -52.48 -0.40 1.21 16 41 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.05 1.39 7.65 -51.93 -0.40 1.00 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -34.19 375.50 -8.63 -42.81 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.21 Total: 5.12 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -5.14 Total: -4.49 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 1.01 Total: -56.11 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.19 -8.63 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528945331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.721 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds