Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35238 * 126.06822 * 2 1 4 4 C 1.40406 * 107.86973 * 180.13075 * 3 2 1 5 5 N 1.40154 * 125.97287 * 179.82100 * 4 3 2 6 6 C 1.34774 * 120.00346 * 359.72487 * 5 4 3 7 7 O 1.21290 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00153 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.46810 * 180.02562 * 8 6 5 10 10 C 1.39687 * 119.09006 * 270.01980 * 9 8 6 11 11 C 1.35652 * 121.72754 * 179.97438 * 10 9 8 12 12 C 1.41133 * 119.53232 * 0.03925 * 11 10 9 13 13 C 1.38244 * 134.81064 * 180.02562 * 12 11 10 14 14 N 1.33991 * 107.90445 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.02386 * 179.97438 * 14 13 12 16 16 N 1.39958 * 109.95453 * 0.02562 * 14 13 12 17 17 C 1.32064 * 108.96017 * 359.97438 * 16 14 13 18 18 C 1.35629 * 119.09216 * 90.00451 * 9 8 6 19 19 N 1.31220 * 108.04990 * 359.56812 * 4 3 2 20 20 N 1.34967 * 126.07359 * 179.64809 * 2 1 3 21 21 C 1.46498 * 125.97172 * 359.97438 * 20 2 1 22 22 C 1.50699 * 109.47228 * 270.01262 * 21 20 2 23 23 H 1.08003 * 119.99933 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99954 * 180.02562 * 22 21 20 25 25 N 1.31513 * 120.00184 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99954 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47177 * 89.99576 * 26 24 22 28 28 H 1.48499 * 109.47223 * 209.99802 * 26 24 22 29 29 H 1.48504 * 109.47039 * 329.99887 * 26 24 22 30 30 H 1.09005 * 109.47453 * 270.34433 * 1 2 3 31 31 H 1.09001 * 109.47335 * 30.34924 * 1 2 3 32 32 H 1.09007 * 109.47002 * 150.34811 * 1 2 3 33 33 H 1.08006 * 126.06723 * 359.95846 * 3 2 1 34 34 H 0.97007 * 120.00165 * 179.71614 * 5 4 3 35 35 H 1.08997 * 109.46662 * 59.99890 * 8 6 5 36 36 H 1.08998 * 109.47118 * 299.99813 * 8 6 5 37 37 H 1.07999 * 119.13844 * 359.97438 * 10 9 8 38 38 H 1.07996 * 120.23190 * 180.02562 * 11 10 9 39 39 H 1.07994 * 126.05393 * 359.95169 * 13 12 11 40 40 H 1.08002 * 120.20640 * 0.03864 * 18 9 8 41 41 H 1.08993 * 109.47746 * 30.01768 * 21 20 2 42 42 H 1.09003 * 109.46946 * 150.01604 * 21 20 2 43 43 H 0.96997 * 119.99769 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 -0.0030 5 7 4.7733 1.4751 -0.0076 6 6 4.6365 2.8158 -0.0150 7 8 3.5300 3.3125 -0.0182 8 6 5.8584 3.6980 -0.0193 9 6 5.4340 5.1439 -0.0267 10 6 5.2425 5.7892 -1.2508 11 6 4.8603 7.0889 -1.3199 12 6 4.6491 7.8162 -0.1290 13 6 4.2685 9.1119 0.1669 14 7 4.2343 9.2369 1.5005 15 1 3.9972 10.0473 1.9778 16 7 4.5926 8.0255 2.1031 17 6 4.8518 7.1375 1.1605 18 6 5.2481 5.7827 1.1552 19 7 3.6336 -0.6575 0.0046 20 7 2.3017 -1.0909 0.0067 21 6 1.8501 -2.4845 0.0158 22 6 1.6955 -2.9532 1.4397 23 1 1.9115 -2.2801 2.2562 24 6 1.2781 -4.2412 1.7000 25 7 1.0145 -5.0607 0.7057 26 14 1.0857 -4.8220 3.4650 27 1 -0.2973 -4.5449 3.9293 28 1 1.3491 -6.2816 3.5373 29 1 2.0525 -4.1010 4.3315 30 1 -0.3634 0.0062 1.0277 31 1 -0.3634 0.8868 -0.5192 32 1 -0.3633 -0.8932 -0.5085 33 1 1.9719 2.1211 -0.0006 34 1 5.6584 1.0779 -0.0053 35 1 6.4541 3.4891 -0.9079 36 1 6.4534 3.4989 0.8721 37 1 5.4029 5.2389 -2.1661 38 1 4.7189 7.5638 -2.2795 39 1 4.0395 9.8865 -0.5500 40 1 5.4039 5.2586 2.0865 41 1 0.8915 -2.5592 -0.4974 42 1 2.5847 -3.1078 -0.4941 43 1 0.7213 -5.9670 0.8889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530289281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = 135.593075 kcal Electronic energy + Delta-G solvation = -27341.307916 eV Core-core repulsion = 23389.879559 eV Total energy + Delta-G solvation = -3951.428358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48576 -40.69395 -39.44465 -37.48595 -34.75816 -33.37522 -32.70492 -32.20973 -31.37893 -30.79649 -29.07350 -28.36272 -26.53994 -26.28859 -24.03336 -23.00457 -22.01548 -21.03304 -20.80797 -19.73902 -19.13335 -18.33014 -16.96405 -16.74074 -16.57843 -16.23050 -15.65503 -15.55291 -15.13977 -15.09333 -14.57395 -14.28890 -14.15031 -13.93620 -13.83817 -13.16886 -12.96084 -12.46989 -12.41476 -12.26182 -12.14359 -11.95142 -11.87513 -11.71428 -11.62024 -11.38040 -11.06643 -10.81233 -10.54185 -10.52223 -10.40784 -10.22154 -9.89559 -9.53569 -9.50057 -8.85296 -8.62805 -7.89943 -7.82775 -7.41625 -6.24015 -4.31389 0.39560 1.58016 2.22939 2.39023 2.42548 2.84738 2.96051 3.22523 3.28895 3.34846 3.63856 3.76276 3.96858 4.02161 4.30718 4.32174 4.55532 4.81269 4.87878 4.94664 5.03655 5.09738 5.26298 5.29665 5.42776 5.44131 5.51142 5.74559 5.95802 5.95905 6.13580 6.23362 6.28994 6.30559 6.47563 6.47739 6.59563 6.66769 6.77034 6.78044 6.95966 7.07598 7.34194 7.50086 7.68341 7.70936 7.90792 8.08179 8.33064 8.68638 8.77426 9.34802 10.83207 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.002021 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.738802 B =13848.446252 C =14101.148926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.090 3.910 3 C -0.290 4.290 4 C 0.264 3.736 5 N -0.633 5.633 6 C 0.519 3.481 7 O -0.505 6.505 8 C -0.101 4.101 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.047 4.047 12 C -0.205 4.205 13 C 0.078 3.922 14 N -0.428 5.428 15 H 0.442 0.558 16 N -0.307 5.307 17 C 0.109 3.891 18 C -0.089 4.089 19 N -0.322 5.322 20 N -0.317 5.317 21 C 0.259 3.741 22 C -0.535 4.535 23 H 0.064 0.936 24 C 0.065 3.935 25 N -0.892 5.892 26 Si 0.906 3.094 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.272 1.272 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.410 0.590 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.187 0.813 40 H 0.128 0.872 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.695 26.910 -4.748 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.321 4.321 4 C 0.012 3.988 5 N -0.281 5.281 6 C 0.304 3.696 7 O -0.378 6.378 8 C -0.141 4.141 9 C -0.025 4.025 10 C -0.153 4.153 11 C -0.067 4.067 12 C -0.215 4.215 13 C -0.079 4.079 14 N -0.129 5.129 15 H 0.286 0.714 16 N -0.136 5.136 17 C -0.044 4.044 18 C -0.110 4.110 19 N -0.152 5.152 20 N -0.100 5.100 21 C 0.141 3.859 22 C -0.573 4.573 23 H 0.082 0.918 24 C -0.138 4.138 25 N -0.530 5.530 26 Si 0.733 3.267 27 H -0.203 1.203 28 H -0.209 1.209 29 H -0.197 1.197 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.176 0.824 34 H 0.245 0.755 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.204 0.796 40 H 0.146 0.854 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.465 26.130 -3.481 27.686 hybrid contribution -0.239 0.277 0.353 0.508 sum 8.226 26.407 -3.129 27.835 Atomic orbital electron populations 1.20330 0.87950 1.02783 1.03141 1.21064 0.94887 0.87217 1.00959 1.21249 0.89785 0.99761 1.21288 1.18996 0.87302 0.89559 1.02970 1.42515 1.07494 1.05113 1.72997 1.20475 0.91309 0.81265 0.76565 1.90686 1.26683 1.73690 1.46725 1.20714 0.96272 0.91089 1.05987 1.18710 0.97430 0.93374 0.92970 1.20381 1.03102 0.94778 0.97033 1.20146 0.97260 0.93745 0.95543 1.19657 1.13122 0.93544 0.95127 1.22677 1.00759 0.98054 0.86428 1.46315 1.49090 1.12473 1.04986 0.71358 1.77700 1.26874 0.90671 1.18321 1.20853 0.98214 0.94738 0.90644 1.19660 1.02935 0.90248 0.98186 1.77250 0.99895 1.08567 1.29515 1.48972 1.01003 1.07753 1.52237 1.19678 0.95958 0.71374 0.98904 1.21321 1.46692 0.97932 0.91371 0.91779 1.24929 0.94711 0.96051 0.98137 1.69919 1.44982 1.06938 1.31160 0.86357 0.78670 0.77870 0.83804 1.20307 1.20881 1.19703 0.90460 0.90853 0.90885 0.82365 0.75471 0.87224 0.87335 0.85920 0.85789 0.79612 0.85416 0.92829 0.93014 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.00 0.36 -1.10 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -6.06 9.52 -39.83 -0.38 -6.44 16 4 C 0.26 5.38 8.11 -154.39 -1.25 4.13 16 5 N -0.63 -9.51 5.45 -11.13 -0.06 -9.57 16 6 C 0.52 7.19 7.79 -10.98 -0.09 7.10 16 7 O -0.51 -8.95 13.16 5.55 0.07 -8.88 16 8 C -0.10 -0.89 5.77 -29.03 -0.17 -1.06 16 9 C -0.02 -0.21 4.33 -105.01 -0.45 -0.67 16 10 C -0.13 -1.31 9.51 -39.97 -0.38 -1.69 16 11 C -0.05 -0.43 10.09 -39.41 -0.40 -0.82 16 12 C -0.20 -2.08 6.33 -105.19 -0.67 -2.74 16 13 C 0.08 0.52 12.08 -16.61 -0.20 0.32 16 14 N -0.43 -3.23 7.18 30.84 0.22 -3.00 16 15 H 0.44 1.56 8.96 -182.70 -1.64 -0.08 16 16 N -0.31 -3.74 12.70 33.25 0.42 -3.32 16 17 C 0.11 1.37 7.49 -83.05 -0.62 0.75 16 18 C -0.09 -1.07 9.65 -39.41 -0.38 -1.45 16 19 N -0.32 -7.46 12.59 31.44 0.40 -7.06 16 20 N -0.32 -7.61 3.59 -58.33 -0.21 -7.82 16 21 C 0.26 6.69 5.99 -5.19 -0.03 6.65 16 22 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 23 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 26 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 29 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.28 7.07 -51.92 -0.37 0.91 16 33 H 0.16 3.25 5.92 -52.48 -0.31 2.94 16 34 H 0.41 4.77 8.82 -40.82 -0.36 4.41 16 35 H 0.11 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.11 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.19 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.05 1.37 7.04 -51.93 -0.37 1.00 16 42 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -37.31 374.09 -9.83 -47.14 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.38 Total: 4.20 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -5.64 Total: -9.15 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 1.51 Total: -55.22 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.31 -9.83 -47.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530289281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.730 kcal (2) G-P(sol) polarization free energy of solvation -37.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds