Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35238 * 126.06822 * 2 1 4 4 C 1.40406 * 107.86973 * 180.13075 * 3 2 1 5 5 N 1.40154 * 125.97287 * 179.82100 * 4 3 2 6 6 C 1.34774 * 120.00346 * 359.72487 * 5 4 3 7 7 O 1.21290 * 119.99766 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00153 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.46810 * 180.02562 * 8 6 5 10 10 C 1.39687 * 119.09006 * 270.01980 * 9 8 6 11 11 C 1.35652 * 121.72754 * 179.97438 * 10 9 8 12 12 C 1.41133 * 119.53232 * 0.03925 * 11 10 9 13 13 C 1.38244 * 134.81064 * 180.02562 * 12 11 10 14 14 N 1.33991 * 107.90445 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.02386 * 179.97438 * 14 13 12 16 16 N 1.39958 * 109.95453 * 0.02562 * 14 13 12 17 17 C 1.32064 * 108.96017 * 359.97438 * 16 14 13 18 18 C 1.35629 * 119.09216 * 90.00451 * 9 8 6 19 19 N 1.31220 * 108.04990 * 359.56812 * 4 3 2 20 20 N 1.34967 * 126.07359 * 179.64809 * 2 1 3 21 21 C 1.46498 * 125.97172 * 359.97438 * 20 2 1 22 22 C 1.50699 * 109.47228 * 270.01262 * 21 20 2 23 23 H 1.08003 * 119.99933 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99954 * 180.02562 * 22 21 20 25 25 N 1.31513 * 120.00184 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99954 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47177 * 89.99576 * 26 24 22 28 28 H 1.48499 * 109.47223 * 209.99802 * 26 24 22 29 29 H 1.48504 * 109.47039 * 329.99887 * 26 24 22 30 30 H 1.09005 * 109.47453 * 270.34433 * 1 2 3 31 31 H 1.09001 * 109.47335 * 30.34924 * 1 2 3 32 32 H 1.09007 * 109.47002 * 150.34811 * 1 2 3 33 33 H 1.08006 * 126.06723 * 359.95846 * 3 2 1 34 34 H 0.97007 * 120.00165 * 179.71614 * 5 4 3 35 35 H 1.08997 * 109.46662 * 59.99890 * 8 6 5 36 36 H 1.08998 * 109.47118 * 299.99813 * 8 6 5 37 37 H 1.07999 * 119.13844 * 359.97438 * 10 9 8 38 38 H 1.07996 * 120.23190 * 180.02562 * 11 10 9 39 39 H 1.07994 * 126.05393 * 359.95169 * 13 12 11 40 40 H 1.08002 * 120.20640 * 0.03864 * 18 9 8 41 41 H 1.08993 * 109.47746 * 30.01768 * 21 20 2 42 42 H 1.09003 * 109.46946 * 150.01604 * 21 20 2 43 43 H 0.96997 * 119.99769 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 -0.0030 5 7 4.7733 1.4751 -0.0076 6 6 4.6365 2.8158 -0.0150 7 8 3.5300 3.3125 -0.0182 8 6 5.8584 3.6980 -0.0193 9 6 5.4340 5.1439 -0.0267 10 6 5.2425 5.7892 -1.2508 11 6 4.8603 7.0889 -1.3199 12 6 4.6491 7.8162 -0.1290 13 6 4.2685 9.1119 0.1669 14 7 4.2343 9.2369 1.5005 15 1 3.9972 10.0473 1.9778 16 7 4.5926 8.0255 2.1031 17 6 4.8518 7.1375 1.1605 18 6 5.2481 5.7827 1.1552 19 7 3.6336 -0.6575 0.0046 20 7 2.3017 -1.0909 0.0067 21 6 1.8501 -2.4845 0.0158 22 6 1.6955 -2.9532 1.4397 23 1 1.9115 -2.2801 2.2562 24 6 1.2781 -4.2412 1.7000 25 7 1.0145 -5.0607 0.7057 26 14 1.0857 -4.8220 3.4650 27 1 -0.2973 -4.5449 3.9293 28 1 1.3491 -6.2816 3.5373 29 1 2.0525 -4.1010 4.3315 30 1 -0.3634 0.0062 1.0277 31 1 -0.3634 0.8868 -0.5192 32 1 -0.3633 -0.8932 -0.5085 33 1 1.9719 2.1211 -0.0006 34 1 5.6584 1.0779 -0.0053 35 1 6.4541 3.4891 -0.9079 36 1 6.4534 3.4989 0.8721 37 1 5.4029 5.2389 -2.1661 38 1 4.7189 7.5638 -2.2795 39 1 4.0395 9.8865 -0.5500 40 1 5.4039 5.2586 2.0865 41 1 0.8915 -2.5592 -0.4974 42 1 2.5847 -3.1078 -0.4941 43 1 0.7213 -5.9670 0.8889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530289281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = 110.450511 kcal Electronic energy + Delta-G solvation = -27342.398180 eV Core-core repulsion = 23389.879559 eV Total energy + Delta-G solvation = -3952.518621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.30665 -42.11254 -40.68108 -38.27791 -36.25820 -35.27621 -33.56996 -33.04226 -32.79836 -32.54433 -29.76151 -29.35785 -28.28747 -27.86085 -25.23826 -24.45058 -23.07433 -21.97601 -21.59145 -21.21969 -20.62685 -18.94964 -18.80219 -17.87760 -17.74729 -17.52356 -17.09251 -16.64629 -16.35656 -16.07085 -15.83139 -15.78060 -15.18306 -15.01345 -14.80570 -14.67333 -14.31826 -13.79992 -13.77016 -13.71943 -13.52697 -13.16519 -12.95999 -12.85751 -12.69996 -12.66161 -12.59748 -12.41315 -12.24808 -12.07756 -11.52651 -11.32528 -11.25317 -11.21252 -10.84425 -10.72815 -9.57758 -9.56281 -9.11214 -8.53702 -8.32713 -6.50270 -0.26747 0.84572 0.95560 1.36559 1.37775 1.41290 1.47626 1.51157 1.57234 1.92165 2.25587 2.30605 2.43933 2.95173 2.96763 3.33983 3.65406 3.76231 3.91693 4.07265 4.18538 4.20195 4.37014 4.42544 4.45477 4.61614 4.66894 4.70793 4.74595 4.80430 4.85405 4.89745 4.99767 5.02496 5.15946 5.26605 5.28355 5.50677 5.53799 5.61822 5.75268 5.81350 5.98242 6.01921 6.26835 6.33066 6.34854 6.62267 6.64991 7.03689 7.20432 7.21058 8.73058 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021324 B = 0.002021 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.738802 B =13848.446252 C =14101.148926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.085 3.915 3 C -0.300 4.300 4 C 0.275 3.725 5 N -0.625 5.625 6 C 0.521 3.479 7 O -0.544 6.544 8 C -0.089 4.089 9 C -0.018 4.018 10 C -0.162 4.162 11 C -0.036 4.036 12 C -0.240 4.240 13 C 0.113 3.887 14 N -0.418 5.418 15 H 0.458 0.542 16 N -0.361 5.361 17 C 0.081 3.919 18 C -0.125 4.125 19 N -0.358 5.358 20 N -0.343 5.343 21 C 0.275 3.725 22 C -0.552 4.552 23 H 0.048 0.952 24 C 0.023 3.977 25 N -0.917 5.917 26 Si 0.971 3.029 27 H -0.265 1.265 28 H -0.273 1.273 29 H -0.277 1.277 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.427 0.573 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.242 0.758 40 H 0.119 0.881 41 H 0.052 0.948 42 H 0.025 0.975 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.930 29.169 -5.390 30.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C -0.331 4.331 4 C 0.021 3.979 5 N -0.275 5.275 6 C 0.309 3.691 7 O -0.418 6.418 8 C -0.128 4.128 9 C -0.023 4.023 10 C -0.181 4.181 11 C -0.056 4.056 12 C -0.250 4.250 13 C -0.046 4.046 14 N -0.119 5.119 15 H 0.306 0.694 16 N -0.191 5.191 17 C -0.071 4.071 18 C -0.147 4.147 19 N -0.189 5.189 20 N -0.126 5.126 21 C 0.156 3.844 22 C -0.591 4.591 23 H 0.066 0.934 24 C -0.178 4.178 25 N -0.555 5.555 26 Si 0.795 3.205 27 H -0.190 1.190 28 H -0.198 1.198 29 H -0.202 1.202 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.181 0.819 34 H 0.265 0.735 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.174 0.826 39 H 0.258 0.742 40 H 0.137 0.863 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.727 28.412 -4.110 30.005 hybrid contribution -0.303 -0.178 0.481 0.596 sum 8.424 28.234 -3.629 29.687 Atomic orbital electron populations 1.20458 0.85518 1.04162 1.03836 1.21732 0.96604 0.86594 0.99628 1.21417 0.90208 0.99719 1.21723 1.19365 0.88988 0.89184 1.00406 1.42704 1.06853 1.05182 1.72807 1.21414 0.92369 0.80737 0.74584 1.90662 1.28762 1.74145 1.48261 1.20806 0.94137 0.88867 1.09016 1.18927 0.96444 0.93928 0.92991 1.20667 1.04558 0.95626 0.97249 1.20563 0.94951 0.93515 0.96543 1.20120 1.15104 0.95033 0.94722 1.23531 0.96657 0.97832 0.86536 1.46381 1.47872 1.12047 1.05649 0.69421 1.77604 1.29524 0.92298 1.19633 1.21154 0.98600 0.95207 0.92124 1.19785 1.05391 0.90934 0.98546 1.77172 0.99910 1.10073 1.31745 1.48767 1.01841 1.07453 1.54519 1.19236 0.94934 0.72459 0.97726 1.21423 1.47536 0.98340 0.91760 0.93414 1.25726 0.93981 0.95886 1.02255 1.69998 1.45059 1.07380 1.33088 0.85363 0.78925 0.77603 0.78637 1.18995 1.19785 1.20180 0.89993 0.87697 0.91203 0.81902 0.73492 0.83442 0.84819 0.84197 0.82604 0.74240 0.86291 0.93055 0.95661 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.84 10.11 71.24 0.72 -2.12 16 2 C 0.08 3.68 6.92 41.38 0.29 3.97 16 3 C -0.30 -12.61 9.52 22.11 0.21 -12.40 16 4 C 0.27 11.25 8.11 133.33 1.08 12.34 16 5 N -0.62 -18.29 5.45 -307.52 -1.68 -19.97 16 6 C 0.52 13.93 7.79 87.66 0.68 14.61 16 7 O -0.54 -19.14 13.16 -3.06 -0.04 -19.18 16 8 C -0.09 -1.42 5.77 29.10 0.17 -1.25 16 9 C -0.02 -0.37 4.33 -20.12 -0.09 -0.46 16 10 C -0.16 -2.89 9.51 22.02 0.21 -2.68 16 11 C -0.04 -0.57 10.09 22.38 0.23 -0.34 16 12 C -0.24 -4.45 6.33 -20.23 -0.13 -4.58 16 13 C 0.11 1.16 12.08 84.36 1.02 2.18 16 14 N -0.42 -5.59 7.18 -56.35 -0.40 -6.00 16 15 H 0.46 2.34 8.96 -213.41 -1.91 0.42 16 16 N -0.36 -8.90 12.70 -48.70 -0.62 -9.52 16 17 C 0.08 2.06 7.49 42.16 0.32 2.38 16 18 C -0.13 -3.09 9.65 22.38 0.22 -2.88 16 19 N -0.36 -17.02 12.59 -54.45 -0.69 -17.71 16 20 N -0.34 -16.96 3.59 -338.46 -1.22 -18.17 16 21 C 0.28 14.78 5.99 85.63 0.51 15.30 16 22 C -0.55 -31.45 9.39 25.60 0.24 -31.21 16 23 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 24 C 0.02 1.25 5.46 84.66 0.46 1.71 16 25 N -0.92 -52.17 13.29 21.45 0.28 -51.89 16 26 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 31 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.07 2.45 7.07 -2.38 -0.02 2.44 16 33 H 0.16 6.71 5.92 -2.91 -0.02 6.70 16 34 H 0.43 9.39 8.82 -92.70 -0.82 8.57 16 35 H 0.15 1.27 8.07 -2.39 -0.02 1.25 16 36 H 0.13 1.50 8.06 -2.39 -0.02 1.48 16 37 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.24 -0.38 8.06 -2.91 -0.02 -0.41 16 40 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.05 2.73 7.04 -2.39 -0.02 2.71 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -85.07 374.09 2.16 -82.91 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -1.64 Total: 19.29 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.14 Total: -5.43 kcal Atomic # 7 Polarization: -118.94 SS G_CDS: -4.32 Total: -123.26 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.04 Total: -19.18 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -85.07 2.16 -82.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530289281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.360 kcal (2) G-P(sol) polarization free energy of solvation -85.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds