Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39765 * 125.83848 * 2 1 4 4 C 1.36113 * 107.82467 * 180.15275 * 3 2 1 5 5 N 1.39472 * 126.21399 * 179.84935 * 4 3 2 6 6 C 1.34783 * 120.00085 * 359.68926 * 5 4 3 7 7 O 1.21288 * 119.99566 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.46680 * 179.97438 * 8 6 5 10 10 C 1.34230 * 126.56489 * 264.68215 * 9 8 6 11 11 N 1.36911 * 109.91348 * 180.26661 * 10 9 8 12 12 H 0.97002 * 124.98951 * 180.02562 * 11 10 9 13 13 C 1.37425 * 110.02464 * 0.02562 * 11 10 9 14 14 N 1.32656 * 133.18991 * 180.02562 * 13 11 10 15 15 C 1.31594 * 121.66833 * 180.02562 * 14 13 11 16 16 C 1.38659 * 121.58140 * 359.97438 * 15 14 13 17 17 C 1.38201 * 119.41319 * 359.97438 * 16 15 14 18 18 C 1.39690 * 118.03883 * 0.02562 * 17 16 15 19 19 N 1.35263 * 107.56987 * 359.58487 * 4 3 2 20 20 C 1.46500 * 126.04798 * 180.23093 * 19 4 3 21 21 C 1.50699 * 109.47119 * 89.99828 * 20 19 4 22 22 H 1.08001 * 120.00153 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99517 * 180.02562 * 21 20 19 24 24 N 1.31523 * 119.99852 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00593 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47570 * 89.99689 * 25 23 21 27 27 H 1.48502 * 109.47395 * 210.00130 * 25 23 21 28 28 H 1.48509 * 109.46709 * 329.99785 * 25 23 21 29 29 N 1.30848 * 125.83710 * 179.68879 * 2 1 3 30 30 H 1.09009 * 109.46588 * 270.29504 * 1 2 3 31 31 H 1.09002 * 109.47147 * 30.29049 * 1 2 3 32 32 H 1.08992 * 109.47273 * 150.30011 * 1 2 3 33 33 H 1.07997 * 126.08679 * 0.02562 * 3 2 1 34 34 H 0.96999 * 119.99961 * 179.68605 * 5 4 3 35 35 H 1.09002 * 109.46656 * 60.00032 * 8 6 5 36 36 H 1.08994 * 109.47117 * 299.99498 * 8 6 5 37 37 H 1.08003 * 125.04581 * 0.25349 * 10 9 8 38 38 H 1.07992 * 119.20557 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.29070 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.97726 * 179.97438 * 17 16 15 41 41 H 1.09000 * 109.46889 * 210.00011 * 20 19 4 42 42 H 1.09006 * 109.46973 * 329.99765 * 20 19 4 43 43 H 0.96995 * 120.00114 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 -0.0035 5 7 4.7513 1.5274 -0.0076 6 6 4.6158 2.8684 -0.0148 7 8 3.5097 3.3660 -0.0181 8 6 5.8385 3.7493 -0.0198 9 6 5.4154 5.1957 -0.0281 10 6 5.2868 5.9850 -1.1062 11 7 4.8894 7.2376 -0.7222 12 1 4.7302 7.9801 -1.3258 13 6 4.7491 7.2887 0.6439 14 7 4.3932 8.2511 1.4847 15 6 4.3336 8.0468 2.7834 16 6 4.6396 6.8139 3.3393 17 6 5.0162 5.7717 2.5135 18 6 5.0727 6.0109 1.1384 19 7 3.6093 -0.6405 0.0038 20 6 4.7871 -1.5117 0.0080 21 6 5.1915 -1.8027 1.4303 22 1 4.6278 -1.3806 2.2491 23 6 6.2817 -2.6071 1.6860 24 7 6.6350 -2.8608 2.9272 25 14 7.2579 -3.3355 0.2698 26 1 8.3486 -2.4025 -0.1112 27 1 7.8418 -4.6353 0.6878 28 1 6.3592 -3.5477 -0.8933 29 7 2.2731 -1.0607 0.0058 30 1 -0.3633 0.0053 1.0278 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3633 -0.8926 -0.5091 33 1 1.9903 2.1597 0.0004 34 1 5.6359 1.1294 -0.0052 35 1 6.4333 3.5399 -0.9089 36 1 6.4338 3.5496 0.8711 37 1 5.4699 5.6777 -2.1252 38 1 4.0385 8.8586 3.4315 39 1 4.5841 6.6694 4.4082 40 1 5.2603 4.8011 2.9195 41 1 4.5497 -2.4460 -0.5007 42 1 5.6083 -1.0150 -0.5088 43 1 7.4022 -3.4263 3.1072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531792939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 118.590358 kcal Electronic energy + Delta-G solvation = -28187.811747 eV Core-core repulsion = 24235.646096 eV Total energy + Delta-G solvation = -3952.165651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71047 -40.85618 -39.14154 -37.89398 -34.74612 -33.75249 -33.61772 -32.17231 -31.60641 -29.80655 -29.51436 -28.59060 -27.05212 -26.29980 -23.81310 -22.71386 -22.63925 -21.79343 -19.97643 -19.57084 -19.08071 -18.31561 -17.21491 -17.00210 -16.84688 -16.42199 -16.15648 -15.30552 -15.15402 -14.83181 -14.76598 -14.45999 -13.94700 -13.83597 -13.43920 -13.13659 -13.10174 -12.94203 -12.71549 -12.66362 -12.50712 -12.36369 -12.29755 -11.89099 -11.82345 -11.67928 -11.14263 -10.84572 -10.46116 -10.45598 -10.22679 -9.92916 -9.76911 -9.51340 -9.49495 -8.87585 -8.56117 -8.12374 -7.94774 -7.46963 -6.34634 -4.39065 0.89224 1.28276 2.26256 2.33678 2.62921 2.90300 3.05133 3.09784 3.16033 3.17706 3.57692 3.72543 3.83832 4.12941 4.36388 4.47758 4.53910 4.81344 4.87176 4.91720 4.96330 5.10968 5.25575 5.30326 5.30909 5.43683 5.60670 5.65595 5.80326 6.01960 6.03157 6.15341 6.17262 6.22086 6.27155 6.33239 6.37409 6.38813 6.65850 6.75705 6.81624 7.12587 7.19276 7.45922 7.58184 7.79467 7.89266 8.19209 8.34783 8.58197 8.71996 9.20018 10.77600 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003041 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.819649 B = 9204.066897 C =10247.282756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.293 4.293 4 C 0.307 3.693 5 N -0.644 5.644 6 C 0.517 3.483 7 O -0.503 6.503 8 C -0.062 4.062 9 C -0.143 4.143 10 C 0.077 3.923 11 N -0.581 5.581 12 H 0.419 0.581 13 C 0.285 3.715 14 N -0.503 5.503 15 C 0.134 3.866 16 C -0.202 4.202 17 C -0.024 4.024 18 C -0.133 4.133 19 N -0.345 5.345 20 C 0.230 3.770 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.080 3.920 24 N -0.883 5.883 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.263 1.263 29 N -0.284 5.284 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.415 0.585 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 19.116 -6.867 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.325 4.325 4 C 0.085 3.915 5 N -0.291 5.291 6 C 0.303 3.697 7 O -0.376 6.376 8 C -0.102 4.102 9 C -0.151 4.151 10 C -0.050 4.050 11 N -0.187 5.187 12 H 0.257 0.743 13 C 0.052 3.948 14 N -0.216 5.216 15 C -0.031 4.031 16 C -0.224 4.224 17 C -0.050 4.050 18 C -0.139 4.139 19 N -0.130 5.130 20 C 0.111 3.889 21 C -0.583 4.583 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.520 5.520 25 Si 0.697 3.303 26 H -0.196 1.196 27 H -0.204 1.204 28 H -0.188 1.188 29 N -0.109 5.109 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.251 0.749 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.195 0.805 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.671 18.945 -7.252 20.296 hybrid contribution 1.362 -0.469 -0.388 1.492 sum 0.691 18.475 -7.640 20.005 Atomic orbital electron populations 1.20030 0.87510 1.02313 1.02296 1.22050 0.96542 0.91033 1.01442 1.21274 0.89044 1.00441 1.21768 1.17935 0.88248 0.83014 1.02330 1.42869 1.08016 1.05759 1.72484 1.20669 0.91738 0.80967 0.76287 1.90653 1.26798 1.73561 1.46596 1.19909 0.95383 0.89215 1.05710 1.19411 1.10299 0.94117 0.91267 1.21598 1.00970 0.83197 0.99200 1.41439 1.60324 1.12437 1.04472 0.74324 1.18337 1.00169 0.91139 0.85122 1.66456 1.17759 1.33400 1.04012 1.22402 0.95231 0.96494 0.88963 1.21857 1.05100 0.94285 1.01130 1.21011 0.93815 0.99159 0.91017 1.19648 1.05976 0.94399 0.93920 1.48887 1.06153 1.02060 1.55909 1.19920 0.79292 0.90040 0.99637 1.21198 1.14187 1.32621 0.90338 0.90077 1.24826 0.96640 0.95220 0.95778 1.69874 1.26770 1.36765 1.18546 0.86922 0.80755 0.79763 0.82825 1.19629 1.20384 1.18770 1.77357 0.85826 1.21760 1.25998 0.91179 0.91132 0.91530 0.82066 0.74928 0.87472 0.87367 0.80494 0.82405 0.84536 0.84837 0.92818 0.94742 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.09 7.21 -82.44 -0.59 0.50 16 3 C -0.29 -5.96 9.58 -39.77 -0.38 -6.34 16 4 C 0.31 6.27 7.66 -153.16 -1.17 5.10 16 5 N -0.64 -10.51 5.42 -11.46 -0.06 -10.57 16 6 C 0.52 7.59 7.79 -10.98 -0.09 7.50 16 7 O -0.50 -9.00 13.16 5.55 0.07 -8.92 16 8 C -0.06 -0.62 6.23 -29.04 -0.18 -0.80 16 9 C -0.14 -1.61 4.81 -102.76 -0.49 -2.11 16 10 C 0.08 0.70 11.74 -16.70 -0.20 0.50 16 11 N -0.58 -5.63 6.05 -12.14 -0.07 -5.71 16 12 H 0.42 2.86 8.96 -40.82 -0.37 2.49 16 13 C 0.29 3.63 8.43 -155.69 -1.31 2.32 16 14 N -0.50 -6.39 10.39 -12.27 -0.13 -6.51 16 15 C 0.13 1.42 11.15 -17.50 -0.20 1.22 16 16 C -0.20 -2.09 10.10 -39.44 -0.40 -2.49 16 17 C -0.02 -0.28 10.22 -39.05 -0.40 -0.68 16 18 C -0.13 -1.71 6.37 -105.11 -0.67 -2.38 16 19 N -0.35 -7.84 3.60 -61.57 -0.22 -8.06 16 20 C 0.23 5.31 5.07 -5.19 -0.03 5.29 16 21 C -0.55 -14.71 9.94 -34.44 -0.34 -15.05 16 22 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 23 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 24 N -0.88 -25.38 13.96 55.43 0.77 -24.61 16 25 Si 0.87 19.19 27.47 -169.99 -4.67 14.52 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 29 N -0.28 -6.53 12.56 33.65 0.42 -6.11 16 30 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 3.23 5.83 -52.49 -0.31 2.93 16 34 H 0.41 5.97 7.96 -40.82 -0.33 5.65 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.05 1.27 7.20 -51.93 -0.37 0.89 16 42 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -36.44 371.77 -9.58 -46.02 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.13 Total: 10.29 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -6.17 Total: -5.94 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.71 Total: -61.58 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.67 Total: 14.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.44 -9.58 -46.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531792939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.611 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds