Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39765 * 125.83848 * 2 1 4 4 C 1.36113 * 107.82467 * 180.15275 * 3 2 1 5 5 N 1.39472 * 126.21399 * 179.84935 * 4 3 2 6 6 C 1.34783 * 120.00085 * 359.68926 * 5 4 3 7 7 O 1.21288 * 119.99566 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.46680 * 179.97438 * 8 6 5 10 10 C 1.34230 * 126.56489 * 264.68215 * 9 8 6 11 11 N 1.36911 * 109.91348 * 180.26661 * 10 9 8 12 12 H 0.97002 * 124.98951 * 180.02562 * 11 10 9 13 13 C 1.37425 * 110.02464 * 0.02562 * 11 10 9 14 14 N 1.32656 * 133.18991 * 180.02562 * 13 11 10 15 15 C 1.31594 * 121.66833 * 180.02562 * 14 13 11 16 16 C 1.38659 * 121.58140 * 359.97438 * 15 14 13 17 17 C 1.38201 * 119.41319 * 359.97438 * 16 15 14 18 18 C 1.39690 * 118.03883 * 0.02562 * 17 16 15 19 19 N 1.35263 * 107.56987 * 359.58487 * 4 3 2 20 20 C 1.46500 * 126.04798 * 180.23093 * 19 4 3 21 21 C 1.50699 * 109.47119 * 89.99828 * 20 19 4 22 22 H 1.08001 * 120.00153 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99517 * 180.02562 * 21 20 19 24 24 N 1.31523 * 119.99852 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00593 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47570 * 89.99689 * 25 23 21 27 27 H 1.48502 * 109.47395 * 210.00130 * 25 23 21 28 28 H 1.48509 * 109.46709 * 329.99785 * 25 23 21 29 29 N 1.30848 * 125.83710 * 179.68879 * 2 1 3 30 30 H 1.09009 * 109.46588 * 270.29504 * 1 2 3 31 31 H 1.09002 * 109.47147 * 30.29049 * 1 2 3 32 32 H 1.08992 * 109.47273 * 150.30011 * 1 2 3 33 33 H 1.07997 * 126.08679 * 0.02562 * 3 2 1 34 34 H 0.96999 * 119.99961 * 179.68605 * 5 4 3 35 35 H 1.09002 * 109.46656 * 60.00032 * 8 6 5 36 36 H 1.08994 * 109.47117 * 299.99498 * 8 6 5 37 37 H 1.08003 * 125.04581 * 0.25349 * 10 9 8 38 38 H 1.07992 * 119.20557 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.29070 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.97726 * 179.97438 * 17 16 15 41 41 H 1.09000 * 109.46889 * 210.00011 * 20 19 4 42 42 H 1.09006 * 109.46973 * 329.99765 * 20 19 4 43 43 H 0.96995 * 120.00114 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 -0.0035 5 7 4.7513 1.5274 -0.0076 6 6 4.6158 2.8684 -0.0148 7 8 3.5097 3.3660 -0.0181 8 6 5.8385 3.7493 -0.0198 9 6 5.4154 5.1957 -0.0281 10 6 5.2868 5.9850 -1.1062 11 7 4.8894 7.2376 -0.7222 12 1 4.7302 7.9801 -1.3258 13 6 4.7491 7.2887 0.6439 14 7 4.3932 8.2511 1.4847 15 6 4.3336 8.0468 2.7834 16 6 4.6396 6.8139 3.3393 17 6 5.0162 5.7717 2.5135 18 6 5.0727 6.0109 1.1384 19 7 3.6093 -0.6405 0.0038 20 6 4.7871 -1.5117 0.0080 21 6 5.1915 -1.8027 1.4303 22 1 4.6278 -1.3806 2.2491 23 6 6.2817 -2.6071 1.6860 24 7 6.6350 -2.8608 2.9272 25 14 7.2579 -3.3355 0.2698 26 1 8.3486 -2.4025 -0.1112 27 1 7.8418 -4.6353 0.6878 28 1 6.3592 -3.5477 -0.8933 29 7 2.2731 -1.0607 0.0058 30 1 -0.3633 0.0053 1.0278 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3633 -0.8926 -0.5091 33 1 1.9903 2.1597 0.0004 34 1 5.6359 1.1294 -0.0052 35 1 6.4333 3.5399 -0.9089 36 1 6.4338 3.5496 0.8711 37 1 5.4699 5.6777 -2.1252 38 1 4.0385 8.8586 3.4315 39 1 4.5841 6.6694 4.4082 40 1 5.2603 4.8011 2.9195 41 1 4.5497 -2.4460 -0.5007 42 1 5.6083 -1.0150 -0.5088 43 1 7.4022 -3.4263 3.1072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531792939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 94.154743 kcal Electronic energy + Delta-G solvation = -28188.871355 eV Core-core repulsion = 24235.646096 eV Total energy + Delta-G solvation = -3953.225259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.56939 -42.30582 -40.42613 -38.70029 -36.22444 -35.49739 -34.47247 -33.95865 -32.50594 -31.12847 -30.59407 -29.94978 -28.11004 -27.94257 -24.62815 -24.41231 -23.49806 -23.14680 -21.32194 -20.94317 -20.12994 -19.24366 -19.15048 -18.38314 -17.74657 -17.67917 -17.00740 -16.69041 -16.40768 -16.10832 -15.87421 -15.56025 -15.44904 -15.11169 -14.81240 -14.34747 -14.22599 -14.14431 -13.99847 -13.79094 -13.71331 -13.49205 -13.34627 -13.16403 -13.11789 -12.89541 -12.52013 -12.43862 -12.09018 -11.84345 -11.72116 -11.49445 -11.28434 -10.89346 -10.82633 -10.36715 -9.59550 -9.37490 -9.03767 -8.90921 -8.40481 -6.53295 0.07366 0.44158 0.83657 1.27335 1.35011 1.40679 1.49644 1.67710 1.74160 1.91200 2.09606 2.26987 2.34605 2.91121 2.96416 3.62422 3.66156 3.79127 3.80913 3.83531 4.09213 4.22053 4.23800 4.39179 4.47929 4.52686 4.59935 4.61538 4.69552 4.71973 4.86219 4.87675 4.94944 4.95475 5.03736 5.15793 5.20724 5.23737 5.36560 5.47718 5.59611 5.88688 6.00845 6.01920 6.27173 6.39901 6.45106 6.51545 6.98452 7.08262 7.10080 7.13429 8.75970 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011450 B = 0.003041 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.819649 B = 9204.066897 C =10247.282756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.059 3.941 3 C -0.310 4.310 4 C 0.307 3.693 5 N -0.641 5.641 6 C 0.518 3.482 7 O -0.536 6.536 8 C -0.048 4.048 9 C -0.176 4.176 10 C 0.096 3.904 11 N -0.573 5.573 12 H 0.432 0.568 13 C 0.257 3.743 14 N -0.522 5.522 15 C 0.125 3.875 16 C -0.201 4.201 17 C -0.050 4.050 18 C -0.156 4.156 19 N -0.367 5.367 20 C 0.239 3.761 21 C -0.554 4.554 22 H 0.021 0.979 23 C 0.024 3.976 24 N -0.935 5.935 25 Si 0.950 3.050 26 H -0.241 1.241 27 H -0.282 1.282 28 H -0.248 1.248 29 N -0.331 5.331 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.423 0.577 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.219 0.781 38 H 0.189 0.811 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 20.086 -9.336 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.342 4.342 4 C 0.085 3.915 5 N -0.290 5.290 6 C 0.307 3.693 7 O -0.411 6.411 8 C -0.088 4.088 9 C -0.183 4.183 10 C -0.031 4.031 11 N -0.181 5.181 12 H 0.271 0.729 13 C 0.024 3.976 14 N -0.236 5.236 15 C -0.040 4.040 16 C -0.222 4.222 17 C -0.076 4.076 18 C -0.163 4.163 19 N -0.152 5.152 20 C 0.119 3.881 21 C -0.592 4.592 22 H 0.039 0.961 23 C -0.176 4.176 24 N -0.573 5.573 25 Si 0.771 3.229 26 H -0.165 1.165 27 H -0.208 1.208 28 H -0.171 1.171 29 N -0.156 5.156 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.181 0.819 34 H 0.261 0.739 35 H 0.167 0.833 36 H 0.137 0.863 37 H 0.236 0.764 38 H 0.206 0.794 39 H 0.178 0.822 40 H 0.151 0.849 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.484 19.963 -9.733 22.214 hybrid contribution 0.893 -0.641 0.500 1.208 sum 1.377 19.322 -9.233 21.458 Atomic orbital electron populations 1.20219 0.84172 1.04099 1.03507 1.22854 0.98656 0.90204 0.98910 1.21441 0.89374 1.00576 1.22801 1.18324 0.89829 0.82663 1.00734 1.43104 1.07294 1.06093 1.72503 1.21659 0.92881 0.80323 0.74442 1.90629 1.28659 1.73856 1.47909 1.19967 0.93220 0.87427 1.08192 1.19608 1.12543 0.94800 0.91382 1.22276 0.98098 0.82286 1.00445 1.41547 1.59547 1.13243 1.03718 0.72858 1.18669 1.01219 0.91359 0.86355 1.66509 1.18321 1.33836 1.04911 1.22976 0.94705 0.97498 0.88841 1.22173 1.03897 0.93857 1.02250 1.21239 0.95064 0.99796 0.91504 1.20031 1.06311 0.95221 0.94744 1.48819 1.06027 1.02817 1.57561 1.19752 0.80583 0.90705 0.97050 1.21221 1.14018 1.32957 0.90984 0.96106 1.25842 0.97601 0.95134 0.99008 1.70041 1.27796 1.37882 1.21565 0.85691 0.79542 0.78876 0.78794 1.16476 1.20751 1.17112 1.77291 0.86415 1.23469 1.28442 0.90111 0.88670 0.90405 0.81891 0.73874 0.83259 0.86319 0.76444 0.79397 0.82182 0.84902 0.93207 0.91174 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.44 71.24 0.74 -1.02 16 2 C 0.06 2.37 7.21 43.07 0.31 2.68 16 3 C -0.31 -12.65 9.58 22.14 0.21 -12.44 16 4 C 0.31 12.59 7.66 131.32 1.01 13.59 16 5 N -0.64 -20.38 5.42 -308.55 -1.67 -22.05 16 6 C 0.52 14.59 7.79 87.66 0.68 15.27 16 7 O -0.54 -18.93 13.16 -3.06 -0.04 -18.97 16 8 C -0.05 -0.86 6.23 29.10 0.18 -0.68 16 9 C -0.18 -3.65 4.81 -18.66 -0.09 -3.74 16 10 C 0.10 1.49 11.74 82.98 0.97 2.47 16 11 N -0.57 -10.18 6.05 -192.34 -1.16 -11.34 16 12 H 0.43 5.12 8.96 -92.71 -0.83 4.29 16 13 C 0.26 6.39 8.43 133.93 1.13 7.52 16 14 N -0.52 -13.04 10.39 -192.74 -2.00 -15.04 16 15 C 0.12 2.54 11.15 84.83 0.95 3.49 16 16 C -0.20 -4.08 10.10 22.36 0.23 -3.85 16 17 C -0.05 -1.21 10.22 22.61 0.23 -0.98 16 18 C -0.16 -3.98 6.37 -20.18 -0.13 -4.11 16 19 N -0.37 -16.84 3.60 -348.71 -1.26 -18.10 16 20 C 0.24 10.94 5.07 85.63 0.43 11.37 16 21 C -0.55 -30.73 9.94 25.60 0.25 -30.47 16 22 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 23 C 0.02 1.32 5.47 84.65 0.46 1.78 16 24 N -0.93 -55.16 13.96 21.45 0.30 -54.86 16 25 Si 0.95 38.57 27.47 68.60 1.88 40.46 16 26 H -0.24 -8.66 7.11 99.48 0.71 -7.95 16 27 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.25 -9.38 6.54 99.48 0.65 -8.73 16 29 N -0.33 -15.48 12.56 -47.44 -0.60 -16.07 16 30 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.16 6.57 5.83 -2.91 -0.02 6.55 16 34 H 0.42 11.56 7.96 -92.71 -0.74 10.82 16 35 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.05 2.31 7.20 -2.39 -0.02 2.29 16 42 H 0.07 2.69 6.93 -2.38 -0.02 2.67 16 43 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -84.36 371.77 2.49 -81.87 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.54 Total: 33.23 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 7.58 Total: 0.87 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -6.39 Total: -137.46 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.04 Total: -18.97 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.88 Total: 40.46 kcal Total: -84.36 2.49 -81.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531792939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.024 kcal (2) G-P(sol) polarization free energy of solvation -84.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds