Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39733 * 125.78325 * 2 1 4 4 C 1.36146 * 107.86077 * 180.02562 * 3 2 1 5 5 N 1.39380 * 126.26167 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00369 * 0.02562 * 5 4 3 7 7 O 1.21600 * 119.99813 * 359.97438 * 6 5 4 8 8 C 1.47640 * 120.00347 * 179.97438 * 6 5 4 9 9 C 1.40149 * 119.90453 * 359.72631 * 8 6 5 10 10 C 1.36432 * 120.45526 * 179.73313 * 9 8 6 11 11 C 1.39074 * 120.14656 * 0.52216 * 10 9 8 12 12 C 1.40684 * 120.15137 * 359.75631 * 11 10 9 13 13 C 1.39145 * 119.90405 * 180.02562 * 8 6 5 14 14 N 1.35869 * 106.93042 * 180.02562 * 12 11 10 15 15 C 1.30062 * 109.56588 * 359.97438 * 14 12 11 16 16 N 1.36084 * 110.12701 * 0.02562 * 15 14 12 17 17 C 1.46508 * 126.30265 * 180.02562 * 16 15 14 18 18 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 19 19 C 1.46502 * 126.09707 * 180.02562 * 18 4 3 20 20 C 1.50694 * 109.47161 * 269.98317 * 19 18 4 21 21 H 1.08000 * 120.00069 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00182 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99730 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47252 * 89.99893 * 24 22 20 26 26 H 1.48502 * 109.46928 * 209.99529 * 24 22 20 27 27 H 1.48497 * 109.47090 * 329.99525 * 24 22 20 28 28 N 1.30835 * 125.77694 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47047 * 270.00356 * 1 2 3 30 30 H 1.09000 * 109.46455 * 29.99615 * 1 2 3 31 31 H 1.08997 * 109.47335 * 149.99991 * 1 2 3 32 32 H 1.07995 * 126.06673 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00049 * 180.02562 * 5 4 3 34 34 H 1.07997 * 119.77512 * 0.02562 * 9 8 6 35 35 H 1.08005 * 119.92544 * 180.30217 * 10 9 8 36 36 H 1.07994 * 120.24874 * 359.97314 * 13 8 6 37 37 H 1.08001 * 124.93925 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47067 * 89.97709 * 17 16 15 39 39 H 1.09000 * 109.46625 * 209.97214 * 17 16 15 40 40 H 1.08998 * 109.47029 * 329.97545 * 17 16 15 41 41 H 1.09006 * 109.46515 * 29.97671 * 19 18 4 42 42 H 1.08998 * 109.47494 * 149.97644 * 19 18 4 43 43 H 0.97002 * 119.99592 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7146 -0.0006 5 7 4.7497 1.5302 -0.0013 6 6 4.6132 2.8710 -0.0009 7 8 3.5039 3.3692 -0.0004 8 6 5.8104 3.7350 -0.0011 9 6 7.0879 3.1587 0.0042 10 6 8.2019 3.9464 -0.0014 11 6 8.0779 5.3316 -0.0014 12 6 6.8032 5.9269 -0.0009 13 6 5.6671 5.1190 -0.0002 14 7 6.9947 7.2720 -0.0016 15 6 8.2694 7.5305 -0.0020 16 7 8.9823 6.3713 -0.0021 17 6 10.4424 6.2509 -0.0020 18 7 3.6088 -0.6434 -0.0015 19 6 4.7858 -1.5158 -0.0018 20 6 5.1894 -1.8142 -1.4227 21 1 4.6254 -1.3963 -2.2435 22 6 6.2788 -2.6209 -1.6750 23 7 6.9659 -3.1294 -0.6755 24 14 6.7795 -2.9903 -3.4363 25 1 7.7455 -1.9630 -3.9021 26 1 7.4142 -4.3313 -3.4996 27 1 5.5770 -2.9701 -4.3074 28 7 2.2719 -1.0615 -0.0005 29 1 -0.3633 0.0001 1.0277 30 1 -0.3632 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.9877 2.1598 0.0004 33 1 5.6345 1.1329 -0.0020 34 1 7.1914 2.0837 0.0079 35 1 9.1823 3.4932 -0.0022 36 1 4.6831 5.5641 0.0002 37 1 8.6997 8.5211 -0.0030 38 1 10.8044 6.2213 1.0257 39 1 10.7313 5.3338 -0.5155 40 1 10.8776 7.1078 -0.5161 41 1 5.6076 -1.0172 0.5122 42 1 4.5478 -2.4473 0.5116 43 1 7.7321 -3.6972 -0.8531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533118266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = 123.640568 kcal Electronic energy + Delta-G solvation = -28076.056995 eV Core-core repulsion = 24124.110337 eV Total energy + Delta-G solvation = -3951.946657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44507 -40.81447 -39.34360 -37.06043 -34.81754 -34.53999 -33.75429 -32.04740 -30.95867 -29.97856 -29.04852 -28.12322 -27.36333 -26.00543 -24.34008 -23.03543 -22.80987 -21.30810 -20.97215 -19.74304 -19.40374 -17.62032 -17.44166 -17.04346 -16.69228 -16.18024 -16.00377 -15.59818 -15.10266 -14.75103 -14.34543 -14.29695 -14.01839 -13.96168 -13.81711 -13.58396 -13.33971 -12.91362 -12.80755 -12.75412 -12.46720 -12.07480 -11.83214 -11.77118 -11.69367 -11.54968 -11.07841 -10.89084 -10.70590 -10.36901 -10.32223 -10.26085 -9.92770 -9.79966 -9.49492 -8.72462 -8.68249 -8.40821 -7.87043 -7.39188 -6.33621 -4.41819 0.67360 0.84282 2.23614 2.38469 2.58260 2.81767 3.14787 3.15990 3.22991 3.29825 3.57907 3.77406 3.88238 4.00661 4.20280 4.24519 4.24611 4.60739 4.66637 4.75266 4.93262 4.99628 5.05150 5.08440 5.15458 5.38196 5.40141 5.68075 5.82244 6.06878 6.07317 6.12689 6.17980 6.19881 6.24401 6.31113 6.46198 6.49955 6.72167 6.75102 6.85456 7.06243 7.53079 7.55385 7.59652 7.65742 7.80303 7.94386 8.33310 8.63562 8.73195 9.25750 10.73343 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.003403 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.654259 B = 8226.236270 C =10708.366335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.292 4.292 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.570 3.430 7 O -0.512 6.512 8 C -0.139 4.139 9 C -0.066 4.066 10 C -0.114 4.114 11 C 0.068 3.932 12 C 0.032 3.968 13 C 0.011 3.989 14 N -0.486 5.486 15 C 0.256 3.744 16 N -0.496 5.496 17 C 0.078 3.922 18 N -0.347 5.347 19 C 0.257 3.743 20 C -0.540 4.540 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.271 1.271 28 N -0.284 5.284 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.415 0.585 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.147 0.853 37 H 0.215 0.785 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 18.792 2.827 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.324 4.324 4 C 0.079 3.921 5 N -0.281 5.281 6 C 0.357 3.643 7 O -0.387 6.387 8 C -0.145 4.145 9 C -0.086 4.086 10 C -0.135 4.135 11 C -0.042 4.042 12 C -0.085 4.085 13 C -0.009 4.009 14 N -0.204 5.204 15 C -0.030 4.030 16 N -0.187 5.187 17 C -0.064 4.064 18 N -0.133 5.133 19 C 0.139 3.861 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.528 5.528 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.109 5.109 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.253 0.747 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.232 0.768 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.020 18.266 2.879 19.779 hybrid contribution 1.986 -0.265 -0.968 2.226 sum 9.006 18.001 1.911 20.219 Atomic orbital electron populations 1.20021 0.87595 1.02441 1.02027 1.22018 0.96522 0.91019 1.01946 1.21287 0.89057 1.00502 1.21510 1.17991 0.87901 0.83265 1.02906 1.42597 1.08341 1.05411 1.71773 1.17921 0.88960 0.80817 0.76555 1.90717 1.25975 1.73843 1.48165 1.19386 0.92630 0.93128 1.09336 1.20850 0.90740 1.00244 0.96814 1.19565 0.99664 0.88762 1.05462 1.19076 0.90106 0.90670 1.04362 1.18854 0.92236 0.89886 1.07556 1.20349 0.97677 0.90475 0.92387 1.70479 1.15352 1.13615 1.20952 1.25390 0.86819 0.91653 0.99135 1.45317 1.07252 1.05788 1.60301 1.22029 0.75921 1.04776 1.03704 1.49486 1.06457 1.02030 1.55327 1.19607 0.77877 0.89728 0.98854 1.21369 1.13256 1.31764 0.91420 0.91648 1.24927 0.95718 0.94878 0.98126 1.69923 1.19172 1.32692 1.31025 0.86368 0.78857 0.77817 0.83775 1.20346 1.20809 1.19573 1.77328 0.86150 1.21823 1.25586 0.91387 0.91113 0.91533 0.82014 0.74732 0.84332 0.85215 0.83507 0.76833 0.90495 0.89523 0.89189 0.93904 0.92515 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.03 7.20 -82.46 -0.59 0.43 16 3 C -0.29 -6.15 9.58 -39.78 -0.38 -6.53 16 4 C 0.30 6.52 7.68 -152.75 -1.17 5.34 16 5 N -0.63 -11.57 5.36 -12.26 -0.07 -11.63 16 6 C 0.57 9.77 7.73 -12.42 -0.10 9.68 16 7 O -0.51 -9.89 13.45 5.28 0.07 -9.82 16 8 C -0.14 -1.98 5.87 -105.01 -0.62 -2.59 16 9 C -0.07 -0.80 9.47 -39.52 -0.37 -1.18 16 10 C -0.11 -1.21 9.97 -39.92 -0.40 -1.60 16 11 C 0.07 0.77 6.87 -83.95 -0.58 0.19 16 12 C 0.03 0.43 7.22 -84.72 -0.61 -0.18 16 13 C 0.01 0.16 9.64 -38.81 -0.37 -0.21 16 14 N -0.49 -6.05 11.28 -12.07 -0.14 -6.19 16 15 C 0.26 2.11 12.50 -89.78 -1.12 0.99 16 16 N -0.50 -4.03 3.20 -123.12 -0.39 -4.42 16 17 C 0.08 0.28 11.17 59.85 0.67 0.95 16 18 N -0.35 -8.24 3.62 -61.45 -0.22 -8.47 16 19 C 0.26 6.43 6.02 -5.20 -0.03 6.40 16 20 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 21 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.04 13.29 55.43 0.74 -23.31 16 24 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 N -0.28 -6.70 12.56 33.64 0.42 -6.28 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.16 3.32 5.83 -52.49 -0.31 3.01 16 33 H 0.41 6.90 5.99 -40.82 -0.24 6.65 16 34 H 0.14 1.54 6.36 -52.49 -0.33 1.21 16 35 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.15 2.07 7.63 -52.49 -0.40 1.67 16 37 H 0.22 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.04 1.03 7.52 -51.93 -0.39 0.64 16 42 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 43 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.77 372.37 -9.75 -44.52 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.03 Total: 6.46 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -5.72 Total: -2.01 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.34 Total: -60.30 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.77 -9.75 -44.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533118266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.156 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds