Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39733 * 125.78325 * 2 1 4 4 C 1.36146 * 107.86077 * 180.02562 * 3 2 1 5 5 N 1.39380 * 126.26167 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00369 * 0.02562 * 5 4 3 7 7 O 1.21600 * 119.99813 * 359.97438 * 6 5 4 8 8 C 1.47640 * 120.00347 * 179.97438 * 6 5 4 9 9 C 1.40149 * 119.90453 * 359.72631 * 8 6 5 10 10 C 1.36432 * 120.45526 * 179.73313 * 9 8 6 11 11 C 1.39074 * 120.14656 * 0.52216 * 10 9 8 12 12 C 1.40684 * 120.15137 * 359.75631 * 11 10 9 13 13 C 1.39145 * 119.90405 * 180.02562 * 8 6 5 14 14 N 1.35869 * 106.93042 * 180.02562 * 12 11 10 15 15 C 1.30062 * 109.56588 * 359.97438 * 14 12 11 16 16 N 1.36084 * 110.12701 * 0.02562 * 15 14 12 17 17 C 1.46508 * 126.30265 * 180.02562 * 16 15 14 18 18 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 19 19 C 1.46502 * 126.09707 * 180.02562 * 18 4 3 20 20 C 1.50694 * 109.47161 * 269.98317 * 19 18 4 21 21 H 1.08000 * 120.00069 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00182 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99730 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47252 * 89.99893 * 24 22 20 26 26 H 1.48502 * 109.46928 * 209.99529 * 24 22 20 27 27 H 1.48497 * 109.47090 * 329.99525 * 24 22 20 28 28 N 1.30835 * 125.77694 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47047 * 270.00356 * 1 2 3 30 30 H 1.09000 * 109.46455 * 29.99615 * 1 2 3 31 31 H 1.08997 * 109.47335 * 149.99991 * 1 2 3 32 32 H 1.07995 * 126.06673 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00049 * 180.02562 * 5 4 3 34 34 H 1.07997 * 119.77512 * 0.02562 * 9 8 6 35 35 H 1.08005 * 119.92544 * 180.30217 * 10 9 8 36 36 H 1.07994 * 120.24874 * 359.97314 * 13 8 6 37 37 H 1.08001 * 124.93925 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.47067 * 89.97709 * 17 16 15 39 39 H 1.09000 * 109.46625 * 209.97214 * 17 16 15 40 40 H 1.08998 * 109.47029 * 329.97545 * 17 16 15 41 41 H 1.09006 * 109.46515 * 29.97671 * 19 18 4 42 42 H 1.08998 * 109.47494 * 149.97644 * 19 18 4 43 43 H 0.97002 * 119.99592 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1336 0.0000 4 6 3.6195 0.7146 -0.0006 5 7 4.7497 1.5302 -0.0013 6 6 4.6132 2.8710 -0.0009 7 8 3.5039 3.3692 -0.0004 8 6 5.8104 3.7350 -0.0011 9 6 7.0879 3.1587 0.0042 10 6 8.2019 3.9464 -0.0014 11 6 8.0779 5.3316 -0.0014 12 6 6.8032 5.9269 -0.0009 13 6 5.6671 5.1190 -0.0002 14 7 6.9947 7.2720 -0.0016 15 6 8.2694 7.5305 -0.0020 16 7 8.9823 6.3713 -0.0021 17 6 10.4424 6.2509 -0.0020 18 7 3.6088 -0.6434 -0.0015 19 6 4.7858 -1.5158 -0.0018 20 6 5.1894 -1.8142 -1.4227 21 1 4.6254 -1.3963 -2.2435 22 6 6.2788 -2.6209 -1.6750 23 7 6.9659 -3.1294 -0.6755 24 14 6.7795 -2.9903 -3.4363 25 1 7.7455 -1.9630 -3.9021 26 1 7.4142 -4.3313 -3.4996 27 1 5.5770 -2.9701 -4.3074 28 7 2.2719 -1.0615 -0.0005 29 1 -0.3633 0.0001 1.0277 30 1 -0.3632 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.9877 2.1598 0.0004 33 1 5.6345 1.1329 -0.0020 34 1 7.1914 2.0837 0.0079 35 1 9.1823 3.4932 -0.0022 36 1 4.6831 5.5641 0.0002 37 1 8.6997 8.5211 -0.0030 38 1 10.8044 6.2213 1.0257 39 1 10.7313 5.3338 -0.5155 40 1 10.8776 7.1078 -0.5161 41 1 5.6076 -1.0172 0.5122 42 1 4.5478 -2.4473 0.5116 43 1 7.7321 -3.6972 -0.8531 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533118266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = 103.173822 kcal Electronic energy + Delta-G solvation = -28076.944499 eV Core-core repulsion = 24124.110337 eV Total energy + Delta-G solvation = -3952.834162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.23406 -42.41149 -40.76419 -38.06617 -36.33920 -35.64977 -35.25300 -33.83022 -31.93841 -31.07065 -30.56927 -29.57425 -27.94119 -27.78906 -25.46728 -24.64334 -23.93162 -22.61949 -21.73964 -21.31475 -20.83439 -18.93745 -18.76171 -18.28932 -18.19708 -17.18950 -16.98027 -16.87228 -16.61086 -16.36124 -15.78805 -15.56319 -15.17982 -15.13875 -14.70740 -14.54099 -14.42479 -14.12928 -14.10052 -13.99561 -13.58900 -13.39522 -13.37770 -13.12478 -12.92455 -12.69226 -12.68601 -12.66798 -12.30146 -11.96814 -11.69690 -11.51105 -11.43909 -11.09621 -11.01706 -10.74776 -9.65338 -9.56255 -9.28669 -9.04164 -8.35550 -6.52865 -0.35473 -0.04254 0.92897 1.28600 1.36163 1.39191 1.50264 1.64854 1.65292 1.82564 2.07713 2.16100 2.35429 2.77522 2.94573 3.14024 3.44495 3.58950 3.82284 3.86081 3.93239 4.15498 4.17797 4.28888 4.34449 4.48941 4.59336 4.62343 4.73130 4.77336 4.82871 4.85839 4.90886 4.95362 4.97055 5.14217 5.21875 5.23985 5.26536 5.31039 5.52100 5.60782 5.77588 5.96132 6.10948 6.14059 6.26423 6.57273 6.77939 6.89067 7.00965 7.19039 8.70902 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.003403 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.654259 B = 8226.236270 C =10708.366335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.305 4.305 4 C 0.299 3.701 5 N -0.632 5.632 6 C 0.571 3.429 7 O -0.538 6.538 8 C -0.149 4.149 9 C -0.077 4.077 10 C -0.099 4.099 11 C 0.064 3.936 12 C 0.010 3.990 13 C -0.003 4.003 14 N -0.535 5.535 15 C 0.277 3.723 16 N -0.490 5.490 17 C 0.068 3.932 18 N -0.368 5.368 19 C 0.272 3.728 20 C -0.557 4.557 21 H 0.046 0.954 22 C 0.031 3.969 23 N -0.912 5.912 24 Si 0.967 3.033 25 H -0.261 1.261 26 H -0.273 1.273 27 H -0.281 1.281 28 N -0.326 5.326 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.421 0.579 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.132 0.868 37 H 0.265 0.735 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.049 0.951 42 H 0.029 0.971 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.565 20.485 2.176 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.337 4.337 4 C 0.077 3.923 5 N -0.279 5.279 6 C 0.362 3.638 7 O -0.415 6.415 8 C -0.154 4.154 9 C -0.097 4.097 10 C -0.120 4.120 11 C -0.048 4.048 12 C -0.107 4.107 13 C -0.023 4.023 14 N -0.254 5.254 15 C -0.009 4.009 16 N -0.179 5.179 17 C -0.071 4.071 18 N -0.154 5.154 19 C 0.154 3.846 20 C -0.596 4.596 21 H 0.064 0.936 22 C -0.171 4.171 23 N -0.549 5.549 24 Si 0.791 3.209 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.206 1.206 28 N -0.151 5.151 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.260 0.740 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.150 0.850 37 H 0.281 0.719 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.666 19.976 2.241 22.304 hybrid contribution 1.261 -0.597 -0.721 1.571 sum 10.927 19.378 1.520 22.299 Atomic orbital electron populations 1.20229 0.83825 1.03907 1.03918 1.22873 0.98788 0.89928 0.99094 1.21496 0.89132 1.00901 1.22169 1.18348 0.89292 0.82853 1.01850 1.42699 1.07806 1.05565 1.71875 1.18449 0.89710 0.80409 0.75276 1.90678 1.27335 1.74098 1.49401 1.19128 0.92156 0.92629 1.11525 1.20915 0.90342 1.00779 0.97688 1.19832 1.00390 0.88496 1.03267 1.19234 0.90247 0.91514 1.03853 1.18993 0.92824 0.90785 1.08105 1.20265 0.97787 0.90642 0.93616 1.70458 1.18019 1.13219 1.23696 1.26394 0.85754 0.93348 0.95368 1.45669 1.08796 1.04687 1.58711 1.22438 0.72888 1.06584 1.05230 1.49330 1.06335 1.02587 1.57161 1.19244 0.78598 0.88956 0.97840 1.21408 1.13818 1.32748 0.91589 0.93590 1.25638 0.95312 0.94218 1.01950 1.69990 1.19432 1.32735 1.32785 0.85425 0.78302 0.78333 0.78859 1.18596 1.19839 1.20606 1.77278 0.86385 1.23511 1.27955 0.89151 0.88879 0.90783 0.81525 0.74013 0.83712 0.82024 0.84977 0.71947 0.89089 0.89022 0.86090 0.93349 0.95328 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 10.44 71.24 0.74 -1.03 16 2 C 0.06 2.44 7.20 43.07 0.31 2.75 16 3 C -0.31 -13.19 9.58 22.14 0.21 -12.98 16 4 C 0.30 13.40 7.68 131.19 1.01 14.41 16 5 N -0.63 -24.00 5.36 -310.95 -1.67 -25.67 16 6 C 0.57 20.54 7.73 86.73 0.67 21.21 16 7 O -0.54 -21.83 13.45 -4.03 -0.05 -21.89 16 8 C -0.15 -4.39 5.87 -20.11 -0.12 -4.51 16 9 C -0.08 -1.84 9.47 22.31 0.21 -1.63 16 10 C -0.10 -1.92 9.97 22.05 0.22 -1.70 16 11 C 0.06 1.32 6.87 39.00 0.27 1.59 16 12 C 0.01 0.27 7.22 39.40 0.28 0.56 16 13 C 0.00 -0.08 9.64 22.77 0.22 0.14 16 14 N -0.53 -12.78 11.28 -192.09 -2.17 -14.95 16 15 C 0.28 3.69 12.50 180.05 2.25 5.94 16 16 N -0.49 -6.27 3.20 -543.45 -1.74 -8.01 16 17 C 0.07 0.18 11.17 127.77 1.43 1.61 16 18 N -0.37 -18.21 3.62 -348.33 -1.26 -19.48 16 19 C 0.27 14.19 6.02 85.63 0.52 14.71 16 20 C -0.56 -30.71 9.39 25.60 0.24 -30.47 16 21 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 22 C 0.03 1.63 5.46 84.65 0.46 2.09 16 23 N -0.91 -49.32 13.29 21.45 0.28 -49.03 16 24 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 N -0.33 -15.91 12.56 -47.47 -0.60 -16.51 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.17 7.01 5.83 -2.91 -0.02 6.99 16 33 H 0.42 14.57 5.99 -92.71 -0.56 14.02 16 34 H 0.15 3.20 6.36 -2.91 -0.02 3.18 16 35 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.13 4.11 7.63 -2.91 -0.02 4.09 16 37 H 0.27 0.42 8.06 -2.91 -0.02 0.40 16 38 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.12 -0.38 8.14 -2.39 -0.02 -0.39 16 41 H 0.05 2.41 7.52 -2.38 -0.02 2.40 16 42 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -78.77 372.37 4.26 -74.51 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.51 Total: 24.40 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 8.92 Total: 12.69 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -7.15 Total: -133.65 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -78.77 4.26 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533118266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.681 kcal (2) G-P(sol) polarization free energy of solvation -78.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds