Wall clock time and date at job start Sat Apr 11 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35237 * 126.07345 * 2 1 4 4 C 1.40407 * 107.86826 * 180.13425 * 3 2 1 5 5 N 1.40159 * 125.97397 * 179.82550 * 4 3 2 6 6 C 1.34776 * 120.00018 * 359.71931 * 5 4 3 7 7 O 1.21294 * 120.00051 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00154 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47394 * 180.02562 * 8 6 5 10 10 C 1.33983 * 125.02564 * 124.99514 * 9 8 6 11 11 C 1.38245 * 107.90830 * 179.69927 * 10 9 8 12 12 C 1.41124 * 134.82213 * 180.26093 * 11 10 9 13 13 C 1.35654 * 119.54108 * 180.02562 * 12 11 10 14 14 C 1.39687 * 121.72477 * 0.02562 * 13 12 11 15 15 C 1.35628 * 121.81291 * 0.02562 * 14 13 12 16 16 C 1.41151 * 119.60354 * 359.95776 * 15 14 13 17 17 N 1.32064 * 134.68609 * 180.02562 * 16 15 14 18 18 N 1.31224 * 108.05291 * 359.56818 * 4 3 2 19 19 N 1.34978 * 126.06663 * 179.65640 * 2 1 3 20 20 C 1.46496 * 125.97363 * 359.97438 * 19 2 1 21 21 C 1.50700 * 109.47103 * 270.01955 * 20 19 2 22 22 H 1.07998 * 120.00528 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00066 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00287 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99891 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47416 * 90.00161 * 25 23 21 27 27 H 1.48503 * 109.47180 * 210.00152 * 25 23 21 28 28 H 1.48498 * 109.47307 * 329.99763 * 25 23 21 29 29 H 1.08995 * 109.46822 * 270.34564 * 1 2 3 30 30 H 1.09000 * 109.46442 * 30.34814 * 1 2 3 31 31 H 1.09002 * 109.47146 * 150.34379 * 1 2 3 32 32 H 1.08004 * 126.06699 * 359.96286 * 3 2 1 33 33 H 0.97004 * 120.00156 * 179.71987 * 5 4 3 34 34 H 1.08997 * 109.47506 * 59.99821 * 8 6 5 35 35 H 1.09008 * 109.47149 * 299.99696 * 8 6 5 36 36 H 1.08002 * 126.04865 * 359.97199 * 10 9 8 37 37 H 1.08001 * 120.23213 * 0.03002 * 12 11 10 38 38 H 1.08004 * 119.13822 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.09159 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.19855 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.47139 * 30.01971 * 20 19 2 42 42 H 1.09004 * 109.47034 * 150.02152 * 20 19 2 43 43 H 0.96998 * 119.99882 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6544 -0.0031 5 7 4.7736 1.4747 -0.0076 6 6 4.6369 2.8155 -0.0150 7 8 3.5303 3.3123 -0.0172 8 6 5.8588 3.6975 -0.0192 9 7 5.4464 5.1032 -0.0264 10 6 5.8335 6.0228 0.8678 11 6 5.2432 7.2247 0.5243 12 6 5.2641 8.5314 1.0570 13 6 4.5457 9.5112 0.4536 14 6 3.7795 9.2635 -0.6878 15 6 3.7137 8.0316 -1.2512 16 6 4.4358 6.9630 -0.6776 17 7 4.5859 5.6829 -0.9658 18 7 3.6336 -0.6578 0.0045 19 7 2.3017 -1.0911 0.0065 20 6 1.8500 -2.4846 0.0154 21 6 1.6951 -2.9534 1.4393 22 1 1.9119 -2.2808 2.2559 23 6 1.2776 -4.2415 1.6994 24 7 1.1430 -4.6508 2.9420 25 14 0.9047 -5.4056 0.2870 26 1 2.1379 -6.1452 -0.0838 27 1 -0.1444 -6.3703 0.7045 28 1 0.4239 -4.6270 -0.8825 29 1 -0.3633 0.0062 1.0276 30 1 -0.3632 0.8869 -0.5193 31 1 -0.3633 -0.8931 -0.5085 32 1 1.9721 2.1211 -0.0006 33 1 5.6585 1.0774 -0.0054 34 1 6.4546 3.4887 -0.9077 35 1 6.4537 3.4984 0.8723 36 1 6.4939 5.8557 1.7060 37 1 5.8480 8.7499 1.9389 38 1 4.5661 10.5088 0.8670 39 1 3.2243 10.0754 -1.1339 40 1 3.1126 7.8692 -2.1337 41 1 0.8913 -2.5591 -0.4979 42 1 2.5846 -3.1079 -0.4945 43 1 0.8489 -5.5568 3.1250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534325300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:46 Heat of formation + Delta-G solvation = 157.431194 kcal Electronic energy + Delta-G solvation = -27400.089212 eV Core-core repulsion = 23449.607826 eV Total energy + Delta-G solvation = -3950.481386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57280 -40.85274 -39.45039 -37.39759 -35.04451 -33.48906 -33.06975 -32.01663 -31.57224 -31.16810 -29.00483 -28.41300 -26.99714 -26.47774 -23.90862 -22.61292 -22.15989 -21.49459 -20.72344 -19.97049 -19.41948 -17.51560 -17.31134 -17.17488 -17.02635 -16.30731 -15.98499 -15.72243 -15.34605 -15.02267 -14.59304 -14.26711 -14.17310 -13.93925 -13.85714 -13.32239 -13.25714 -13.07328 -12.66004 -12.46923 -12.33950 -12.09154 -11.98240 -11.79855 -11.65800 -11.63676 -11.29356 -10.84519 -10.64846 -10.48043 -10.39982 -10.12226 -10.03333 -9.80422 -9.64256 -8.82639 -8.81560 -8.09515 -7.78406 -7.58965 -6.30475 -4.33940 0.42536 1.67508 1.83336 2.06014 2.25520 2.61578 2.73067 3.12302 3.18142 3.20385 3.52530 3.56780 3.72105 3.94185 4.17487 4.23388 4.35435 4.51148 4.57395 4.79086 4.92173 4.97770 5.12362 5.23282 5.27682 5.37713 5.51861 5.54002 5.75022 5.92023 6.00109 6.07269 6.28918 6.29913 6.33984 6.36386 6.41099 6.43351 6.51767 6.55290 6.65842 6.74286 7.23734 7.24313 7.43701 7.47326 7.77574 7.99990 8.26109 8.46667 8.74222 9.24402 10.81942 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027528 B = 0.001986 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.916018 B =14098.304925 C =14424.042731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 C -0.286 4.286 4 C 0.267 3.733 5 N -0.628 5.628 6 C 0.504 3.496 7 O -0.480 6.480 8 C 0.111 3.889 9 N -0.311 5.311 10 C 0.076 3.924 11 C -0.206 4.206 12 C -0.043 4.043 13 C -0.158 4.158 14 C -0.084 4.084 15 C -0.097 4.097 16 C 0.096 3.904 17 N -0.271 5.271 18 N -0.316 5.316 19 N -0.315 5.315 20 C 0.231 3.769 21 C -0.541 4.541 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.886 5.886 25 Si 0.874 3.126 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.264 1.264 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.412 0.588 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.186 0.814 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.467 23.530 -5.976 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C -0.317 4.317 4 C 0.015 3.985 5 N -0.277 5.277 6 C 0.287 3.713 7 O -0.350 6.350 8 C -0.015 4.015 9 N -0.085 5.085 10 C -0.079 4.079 11 C -0.215 4.215 12 C -0.063 4.063 13 C -0.178 4.178 14 C -0.106 4.106 15 C -0.118 4.118 16 C -0.059 4.059 17 N -0.097 5.097 18 N -0.146 5.146 19 N -0.097 5.097 20 C 0.112 3.888 21 C -0.580 4.580 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.522 5.522 25 Si 0.700 3.300 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.189 1.189 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.247 0.753 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.203 0.797 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.002 21.416 -6.690 24.565 hybrid contribution 0.161 0.094 0.160 0.246 sum 10.164 21.510 -6.530 24.671 Atomic orbital electron populations 1.20368 0.87684 1.02818 1.03536 1.21070 0.94991 0.86902 1.00435 1.21247 0.89691 0.99860 1.20886 1.18878 0.87022 0.89488 1.03144 1.42260 1.07842 1.04596 1.72993 1.20275 0.91137 0.81850 0.78085 1.90778 1.25749 1.73311 1.45193 1.21613 0.95722 0.76726 1.07406 1.47986 1.32941 1.07646 1.19932 1.22610 1.00976 0.88563 0.95705 1.19553 1.06413 0.94678 1.00889 1.20202 0.97730 0.90110 0.98306 1.20499 1.00343 0.99204 0.97730 1.20624 0.98083 0.96284 0.95643 1.19901 1.00620 0.90278 1.00996 1.21022 0.97656 0.91901 0.95346 1.77913 1.12071 1.07310 1.12361 1.77252 0.99550 1.08460 1.29346 1.48530 1.01168 1.07094 1.52901 1.20026 0.95362 0.73604 0.99788 1.21154 1.47502 0.99059 0.90249 0.90139 1.24811 0.94442 0.97483 0.95809 1.69871 1.45584 1.18374 1.18414 0.86883 0.79006 0.81503 0.82574 1.19622 1.20492 1.18890 0.90000 0.90591 0.91018 0.82240 0.75257 0.85497 0.84677 0.79700 0.86064 0.86234 0.85819 0.85558 0.93139 0.93602 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.11 36.01 0.36 -1.08 16 2 C 0.10 2.00 6.92 -82.28 -0.57 1.43 16 3 C -0.29 -5.78 9.52 -39.83 -0.38 -6.16 16 4 C 0.27 5.17 8.11 -154.38 -1.25 3.91 16 5 N -0.63 -8.58 5.45 -11.13 -0.06 -8.64 16 6 C 0.50 6.57 7.82 -10.99 -0.09 6.48 16 7 O -0.48 -8.51 12.79 5.55 0.07 -8.44 16 8 C 0.11 0.85 6.93 -5.20 -0.04 0.81 16 9 N -0.31 -3.40 3.36 -62.00 -0.21 -3.61 16 10 C 0.08 0.68 11.45 -16.61 -0.19 0.49 16 11 C -0.21 -2.25 6.33 -105.19 -0.67 -2.92 16 12 C -0.04 -0.38 10.09 -39.41 -0.40 -0.78 16 13 C -0.16 -1.32 9.90 -39.96 -0.40 -1.71 16 14 C -0.08 -0.74 9.89 -39.97 -0.40 -1.14 16 15 C -0.10 -1.08 10.08 -39.41 -0.40 -1.48 16 16 C 0.10 1.27 7.49 -83.05 -0.62 0.65 16 17 N -0.27 -3.95 11.53 33.26 0.38 -3.57 16 18 N -0.32 -6.95 12.59 31.44 0.40 -6.55 16 19 N -0.31 -7.19 3.59 -58.33 -0.21 -7.40 16 20 C 0.23 5.49 5.06 -5.20 -0.03 5.47 16 21 C -0.54 -15.00 9.94 -34.44 -0.34 -15.34 16 22 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 23 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 24 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 25 Si 0.87 19.96 27.47 -169.99 -4.67 15.29 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.16 7.07 -51.93 -0.37 0.79 16 32 H 0.16 3.22 5.92 -52.48 -0.31 2.91 16 33 H 0.41 4.01 8.82 -40.82 -0.36 3.65 16 34 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.14 0.42 8.04 -51.92 -0.42 0.00 16 36 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.05 1.12 6.10 -51.93 -0.32 0.80 16 42 H 0.05 1.08 7.57 -51.93 -0.39 0.69 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -38.39 371.20 -8.56 -46.95 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.14 Total: 4.95 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -5.49 Total: -9.27 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 1.07 Total: -55.06 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.07 Total: -8.44 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.39 -8.56 -46.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534325300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.376 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds