Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39757 * 125.83057 * 2 1 4 4 C 1.36139 * 107.82178 * 179.97438 * 3 2 1 5 5 N 1.39397 * 126.22251 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99530 * 359.97438 * 5 4 3 7 7 O 1.21735 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.46532 * 119.99822 * 180.02562 * 6 5 4 9 9 C 1.40569 * 126.58261 * 359.68734 * 8 6 5 10 10 N 1.30746 * 108.74456 * 179.81431 * 9 8 6 11 11 N 1.40015 * 109.60579 * 0.45504 * 10 9 8 12 12 C 1.36242 * 132.00973 * 179.64359 * 11 10 9 13 13 C 1.35189 * 120.70504 * 180.02562 * 12 11 10 14 14 C 1.40153 * 120.31764 * 0.04106 * 13 12 11 15 15 C 1.50706 * 120.29400 * 180.02562 * 14 13 12 16 16 C 1.36455 * 119.41343 * 359.97438 * 14 13 12 17 17 C 1.36579 * 107.91163 * 359.71151 * 11 10 9 18 18 N 1.35265 * 107.56282 * 0.02562 * 4 3 2 19 19 C 1.46503 * 126.04900 * 179.97438 * 18 4 3 20 20 C 1.50703 * 109.46705 * 269.99791 * 19 18 4 21 21 H 1.07994 * 120.00293 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99660 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00293 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99928 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47071 * 60.00579 * 24 22 20 26 26 H 1.48495 * 109.47290 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47214 * 300.00646 * 24 22 20 28 28 N 1.30844 * 125.84249 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46924 * 270.04651 * 1 2 3 30 30 H 1.09000 * 109.47013 * 30.04899 * 1 2 3 31 31 H 1.08997 * 109.46666 * 150.05038 * 1 2 3 32 32 H 1.07997 * 126.09450 * 0.02562 * 3 2 1 33 33 H 0.96993 * 120.00007 * 180.02562 * 5 4 3 34 34 H 1.07999 * 125.62372 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.64613 * 0.07326 * 12 11 10 36 36 H 1.08002 * 119.84143 * 180.02562 * 13 12 11 37 37 H 1.09004 * 109.47088 * 269.98294 * 15 14 13 38 38 H 1.09000 * 109.46900 * 29.97804 * 15 14 13 39 39 H 1.08997 * 109.47248 * 149.97759 * 15 14 13 40 40 H 1.08001 * 120.37427 * 179.97438 * 16 14 13 41 41 H 1.09001 * 109.47186 * 29.99922 * 19 18 4 42 42 H 1.09004 * 109.47251 * 150.00186 * 19 18 4 43 43 H 0.96997 * 120.00136 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1331 0.0000 4 6 3.6198 0.7122 0.0006 5 7 4.7509 1.5270 0.0013 6 6 4.6153 2.8680 0.0009 7 8 3.5052 3.3676 -0.0005 8 6 5.8042 3.7245 0.0011 9 6 7.1437 3.2984 0.0078 10 7 7.9195 4.3509 0.0016 11 7 7.1365 5.5117 0.0010 12 6 7.4658 6.8337 0.0020 13 6 6.5047 7.7845 0.0017 14 6 5.1509 7.4220 0.0012 15 6 4.0800 8.4823 0.0003 16 6 4.8110 6.1004 0.0006 17 6 5.8242 5.1331 0.0007 18 7 3.6093 -0.6404 0.0004 19 6 4.7871 -1.5117 0.0003 20 6 5.1909 -1.8103 -1.4206 21 1 4.6270 -1.3924 -2.2414 22 6 6.2809 -2.6160 -1.6727 23 7 6.9680 -3.1245 -0.6731 24 14 6.7811 -2.9867 -3.4339 25 1 7.1036 -1.7175 -4.1344 26 1 7.9749 -3.8697 -3.4341 27 1 5.6621 -3.6676 -4.1334 28 7 2.2732 -1.0607 0.0005 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3632 -0.8904 -0.5130 32 1 1.9901 2.1598 0.0004 33 1 5.6354 1.1289 0.0013 34 1 7.4771 2.2712 0.0133 35 1 8.5057 7.1252 0.0023 36 1 6.7816 8.8284 0.0021 37 1 3.8211 8.7382 1.0278 38 1 4.4484 9.3703 -0.5134 39 1 3.1960 8.1055 -0.5141 40 1 3.7726 5.8036 0.0006 41 1 5.6085 -1.0125 0.5142 42 1 4.5498 -2.4434 0.5139 43 1 7.7347 -3.6916 -0.8505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535040002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = 143.074689 kcal Electronic energy + Delta-G solvation = -28285.567486 eV Core-core repulsion = 24334.463556 eV Total energy + Delta-G solvation = -3951.103931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39242 -40.68524 -38.86660 -37.82173 -34.61668 -33.84973 -33.68786 -32.01262 -31.61461 -30.01771 -29.04050 -28.24456 -27.18830 -25.97703 -24.17425 -23.21631 -22.67734 -22.22125 -20.78873 -19.61684 -19.24512 -17.78648 -17.06076 -16.80566 -16.55573 -16.05857 -15.93946 -15.58121 -14.90121 -14.85911 -14.84721 -14.34476 -13.93154 -13.81062 -13.75375 -13.60074 -12.99966 -12.79753 -12.72627 -12.44571 -12.29653 -12.13160 -12.00841 -11.76497 -11.71391 -11.51256 -11.08025 -11.04578 -10.83713 -10.59899 -10.31667 -10.24423 -9.84286 -9.78386 -9.61720 -9.39536 -8.68202 -7.97903 -7.80950 -7.30223 -6.29718 -4.38019 0.34177 0.71781 1.88140 1.95443 2.71756 2.94769 3.01953 3.21403 3.25639 3.30339 3.48886 3.83380 3.85337 4.00033 4.17692 4.26039 4.28803 4.50392 4.75164 4.87103 5.03483 5.04521 5.05303 5.18474 5.27201 5.34708 5.43400 5.51909 5.64390 5.74551 5.97323 6.07522 6.08819 6.13506 6.22829 6.27753 6.40004 6.51801 6.53363 6.76364 6.89823 7.10096 7.21974 7.59959 7.64252 7.73721 7.84229 8.02162 8.46222 8.67794 8.77466 9.29441 10.77291 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.003419 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.961261 B = 8187.116302 C =10299.030960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.307 3.693 5 N -0.637 5.637 6 C 0.608 3.392 7 O -0.528 6.528 8 C -0.309 4.309 9 C 0.126 3.874 10 N -0.317 5.317 11 N -0.270 5.270 12 C 0.114 3.886 13 C -0.159 4.159 14 C -0.044 4.044 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.171 3.829 18 N -0.346 5.346 19 C 0.257 3.743 20 C -0.540 4.540 21 H 0.064 0.936 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.287 5.287 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.413 0.587 34 H 0.203 0.797 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.163 0.837 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 23.389 2.935 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.085 3.915 5 N -0.283 5.283 6 C 0.397 3.603 7 O -0.405 6.405 8 C -0.324 4.324 9 C -0.055 4.055 10 N -0.137 5.137 11 N -0.034 5.034 12 C -0.012 4.012 13 C -0.180 4.180 14 C -0.049 4.049 15 C -0.173 4.173 16 C -0.129 4.129 17 C 0.050 3.950 18 N -0.131 5.131 19 C 0.139 3.861 20 C -0.578 4.578 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.528 5.528 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.199 1.199 28 N -0.112 5.112 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.250 0.750 34 H 0.220 0.780 35 H 0.190 0.810 36 H 0.175 0.825 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.180 0.820 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.034 22.560 2.984 22.756 hybrid contribution 0.467 -0.141 -0.978 1.093 sum 0.434 22.418 2.006 22.512 Atomic orbital electron populations 1.20008 0.87690 1.02365 1.01955 1.22015 0.96446 0.91115 1.01941 1.21269 0.89023 1.00413 1.22062 1.17865 0.87955 0.83245 1.02456 1.42446 1.08098 1.05286 1.72430 1.16621 0.87692 0.80240 0.75776 1.90683 1.25917 1.73846 1.50030 1.19441 0.93592 0.90685 1.28658 1.24246 0.90453 0.98943 0.91878 1.77638 1.16023 0.88720 1.31343 1.46100 1.05699 1.06090 1.45480 1.21559 1.01846 0.78553 0.99255 1.20835 0.91661 0.99838 1.05702 1.20073 0.94843 0.94700 0.95293 1.20849 0.96715 0.96453 1.03241 1.20773 1.00043 0.90196 1.01922 1.19207 0.84820 0.93663 0.97281 1.49326 1.06498 1.02167 1.55151 1.19602 0.77884 0.89758 0.98831 1.21319 1.13254 1.31876 0.91399 0.91733 1.24924 0.95698 0.94901 0.98107 1.69909 1.19174 1.32650 1.31082 0.86426 0.78069 0.78520 0.83779 1.19959 1.20925 1.19880 1.77337 0.86138 1.21822 1.25952 0.91447 0.91186 0.91582 0.82073 0.75019 0.78025 0.81001 0.82503 0.90131 0.90790 0.90440 0.81988 0.93856 0.92571 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.30 -6.23 9.58 -39.77 -0.38 -6.61 16 4 C 0.31 6.71 7.66 -153.22 -1.17 5.54 16 5 N -0.64 -11.88 5.40 -12.69 -0.07 -11.95 16 6 C 0.61 10.67 7.75 -12.92 -0.10 10.57 16 7 O -0.53 -10.03 12.82 5.16 0.07 -9.97 16 8 C -0.31 -4.68 6.17 -104.68 -0.65 -5.33 16 9 C 0.13 1.73 11.44 -17.14 -0.20 1.53 16 10 N -0.32 -4.40 12.57 30.76 0.39 -4.01 16 11 N -0.27 -3.33 3.86 -10.54 -0.04 -3.37 16 12 C 0.11 0.94 11.17 -16.68 -0.19 0.75 16 13 C -0.16 -1.01 9.67 -39.95 -0.39 -1.40 16 14 C -0.04 -0.34 5.89 -104.54 -0.62 -0.96 16 15 C -0.12 -0.58 10.03 36.01 0.36 -0.22 16 16 C -0.11 -1.24 9.38 -39.53 -0.37 -1.61 16 17 C 0.17 2.32 6.76 -84.07 -0.57 1.76 16 18 N -0.35 -8.30 3.60 -61.58 -0.22 -8.52 16 19 C 0.26 6.52 6.01 -5.19 -0.03 6.48 16 20 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 21 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 24 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 N -0.29 -6.83 12.56 33.65 0.42 -6.41 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.16 3.28 5.82 -52.49 -0.31 2.97 16 33 H 0.41 7.09 6.88 -40.82 -0.28 6.81 16 34 H 0.20 2.29 7.46 -52.49 -0.39 1.90 16 35 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 39 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.16 1.90 7.12 -52.49 -0.37 1.53 16 41 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 42 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -34.30 372.88 -8.14 -42.44 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.09 Total: 6.91 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.93 Total: -2.92 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 1.21 Total: -58.03 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.30 -8.14 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535040002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.515 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds