Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39757 * 125.83057 * 2 1 4 4 C 1.36139 * 107.82178 * 179.97438 * 3 2 1 5 5 N 1.39397 * 126.22251 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99530 * 359.97438 * 5 4 3 7 7 O 1.21735 * 120.00290 * 359.97438 * 6 5 4 8 8 C 1.46532 * 119.99822 * 180.02562 * 6 5 4 9 9 C 1.40569 * 126.58261 * 359.68734 * 8 6 5 10 10 N 1.30746 * 108.74456 * 179.81431 * 9 8 6 11 11 N 1.40015 * 109.60579 * 0.45504 * 10 9 8 12 12 C 1.36242 * 132.00973 * 179.64359 * 11 10 9 13 13 C 1.35189 * 120.70504 * 180.02562 * 12 11 10 14 14 C 1.40153 * 120.31764 * 0.04106 * 13 12 11 15 15 C 1.50706 * 120.29400 * 180.02562 * 14 13 12 16 16 C 1.36455 * 119.41343 * 359.97438 * 14 13 12 17 17 C 1.36579 * 107.91163 * 359.71151 * 11 10 9 18 18 N 1.35265 * 107.56282 * 0.02562 * 4 3 2 19 19 C 1.46503 * 126.04900 * 179.97438 * 18 4 3 20 20 C 1.50703 * 109.46705 * 269.99791 * 19 18 4 21 21 H 1.07994 * 120.00293 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99660 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00293 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99928 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47071 * 60.00579 * 24 22 20 26 26 H 1.48495 * 109.47290 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47214 * 300.00646 * 24 22 20 28 28 N 1.30844 * 125.84249 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46924 * 270.04651 * 1 2 3 30 30 H 1.09000 * 109.47013 * 30.04899 * 1 2 3 31 31 H 1.08997 * 109.46666 * 150.05038 * 1 2 3 32 32 H 1.07997 * 126.09450 * 0.02562 * 3 2 1 33 33 H 0.96993 * 120.00007 * 180.02562 * 5 4 3 34 34 H 1.07999 * 125.62372 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.64613 * 0.07326 * 12 11 10 36 36 H 1.08002 * 119.84143 * 180.02562 * 13 12 11 37 37 H 1.09004 * 109.47088 * 269.98294 * 15 14 13 38 38 H 1.09000 * 109.46900 * 29.97804 * 15 14 13 39 39 H 1.08997 * 109.47248 * 149.97759 * 15 14 13 40 40 H 1.08001 * 120.37427 * 179.97438 * 16 14 13 41 41 H 1.09001 * 109.47186 * 29.99922 * 19 18 4 42 42 H 1.09004 * 109.47251 * 150.00186 * 19 18 4 43 43 H 0.96997 * 120.00136 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1331 0.0000 4 6 3.6198 0.7122 0.0006 5 7 4.7509 1.5270 0.0013 6 6 4.6153 2.8680 0.0009 7 8 3.5052 3.3676 -0.0005 8 6 5.8042 3.7245 0.0011 9 6 7.1437 3.2984 0.0078 10 7 7.9195 4.3509 0.0016 11 7 7.1365 5.5117 0.0010 12 6 7.4658 6.8337 0.0020 13 6 6.5047 7.7845 0.0017 14 6 5.1509 7.4220 0.0012 15 6 4.0800 8.4823 0.0003 16 6 4.8110 6.1004 0.0006 17 6 5.8242 5.1331 0.0007 18 7 3.6093 -0.6404 0.0004 19 6 4.7871 -1.5117 0.0003 20 6 5.1909 -1.8103 -1.4206 21 1 4.6270 -1.3924 -2.2414 22 6 6.2809 -2.6160 -1.6727 23 7 6.9680 -3.1245 -0.6731 24 14 6.7811 -2.9867 -3.4339 25 1 7.1036 -1.7175 -4.1344 26 1 7.9749 -3.8697 -3.4341 27 1 5.6621 -3.6676 -4.1334 28 7 2.2732 -1.0607 0.0005 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3632 -0.8904 -0.5130 32 1 1.9901 2.1598 0.0004 33 1 5.6354 1.1289 0.0013 34 1 7.4771 2.2712 0.0133 35 1 8.5057 7.1252 0.0023 36 1 6.7816 8.8284 0.0021 37 1 3.8211 8.7382 1.0278 38 1 4.4484 9.3703 -0.5134 39 1 3.1960 8.1055 -0.5141 40 1 3.7726 5.8036 0.0006 41 1 5.6085 -1.0125 0.5142 42 1 4.5498 -2.4434 0.5139 43 1 7.7347 -3.6916 -0.8505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535040002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = 121.979832 kcal Electronic energy + Delta-G solvation = -28286.482228 eV Core-core repulsion = 24334.463556 eV Total energy + Delta-G solvation = -3952.018672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.31194 -42.31770 -40.26280 -38.65408 -36.22433 -35.55815 -34.64810 -33.80888 -32.47012 -31.14829 -30.53871 -29.57301 -28.11340 -27.78486 -25.17092 -24.68524 -24.10138 -23.08118 -22.08986 -21.19221 -20.61782 -18.94364 -18.83035 -18.29659 -17.66435 -17.16315 -17.05255 -16.76159 -16.44171 -16.27319 -15.87682 -15.71465 -15.37995 -15.20090 -14.54172 -14.45833 -14.41252 -14.32448 -14.02324 -13.57268 -13.51903 -13.36463 -13.10918 -12.98849 -12.90847 -12.72456 -12.69665 -12.54058 -12.28655 -12.01049 -11.93002 -11.68368 -11.44233 -11.44071 -10.88353 -10.76165 -10.39317 -9.61645 -9.12273 -8.73412 -8.36210 -6.53618 -0.46646 -0.07626 0.71788 1.01997 1.23290 1.36451 1.37976 1.44424 1.49197 1.90860 2.15776 2.23805 2.36590 2.51045 2.93871 3.05833 3.39083 3.65544 3.72732 3.84232 3.88212 4.01755 4.14282 4.31690 4.41905 4.51477 4.64664 4.74988 4.78058 4.84306 4.85113 4.88584 4.92187 4.93582 5.00378 5.11127 5.18777 5.25795 5.27474 5.34244 5.45848 5.51257 5.70880 5.77253 6.00030 6.16316 6.25254 6.36130 6.58113 7.02884 7.06639 7.18355 8.70052 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.003419 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.961261 B = 8187.116302 C =10299.030960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.059 3.941 3 C -0.307 4.307 4 C 0.304 3.696 5 N -0.638 5.638 6 C 0.609 3.391 7 O -0.549 6.549 8 C -0.350 4.350 9 C 0.127 3.873 10 N -0.338 5.338 11 N -0.273 5.273 12 C 0.103 3.897 13 C -0.140 4.140 14 C -0.015 4.015 15 C -0.118 4.118 16 C -0.149 4.149 17 C 0.165 3.835 18 N -0.368 5.368 19 C 0.273 3.727 20 C -0.557 4.557 21 H 0.046 0.954 22 C 0.029 3.971 23 N -0.913 5.913 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.271 1.271 27 H -0.277 1.277 28 N -0.331 5.331 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.417 0.583 34 H 0.213 0.787 35 H 0.206 0.794 36 H 0.209 0.791 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 27.103 2.275 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C -0.339 4.339 4 C 0.081 3.919 5 N -0.284 5.284 6 C 0.401 3.599 7 O -0.427 6.427 8 C -0.365 4.365 9 C -0.054 4.054 10 N -0.158 5.158 11 N -0.036 5.036 12 C -0.023 4.023 13 C -0.160 4.160 14 C -0.020 4.020 15 C -0.174 4.174 16 C -0.169 4.169 17 C 0.044 3.956 18 N -0.154 5.154 19 C 0.154 3.846 20 C -0.595 4.595 21 H 0.065 0.935 22 C -0.173 4.173 23 N -0.551 5.551 24 Si 0.791 3.209 25 H -0.192 1.192 26 H -0.195 1.195 27 H -0.202 1.202 28 N -0.156 5.156 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.254 0.746 34 H 0.230 0.770 35 H 0.223 0.777 36 H 0.226 0.774 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.166 0.834 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.470 26.294 2.335 26.402 hybrid contribution 0.284 -0.940 -0.722 1.219 sum 0.754 25.354 1.613 25.416 Atomic orbital electron populations 1.20222 0.83791 1.03889 1.03885 1.22894 0.98756 0.89983 0.98972 1.21485 0.88925 1.00877 1.22601 1.18257 0.89394 0.82800 1.01422 1.42580 1.07480 1.05574 1.72773 1.17011 0.88413 0.79730 0.74790 1.90634 1.26911 1.73939 1.51260 1.19242 0.92962 0.91438 1.32840 1.24401 0.90040 0.99641 0.91296 1.77535 1.16504 0.89234 1.32510 1.46335 1.04999 1.07101 1.45160 1.22490 1.04311 0.77046 0.98432 1.21483 0.90190 1.01797 1.02573 1.20587 0.96739 0.93879 0.90837 1.21006 0.95667 0.96271 1.04498 1.20800 0.99039 0.91533 1.05511 1.19395 0.85972 0.93455 0.96802 1.49145 1.06356 1.02732 1.57157 1.19209 0.78658 0.88971 0.97765 1.21384 1.13763 1.32702 0.91642 0.93525 1.25662 0.95326 0.94300 1.02007 1.69983 1.19439 1.32764 1.32891 0.85470 0.77837 0.78623 0.78961 1.19211 1.19512 1.20231 1.77283 0.86329 1.23609 1.28428 0.89175 0.88771 0.90892 0.81369 0.74598 0.77047 0.77710 0.77433 0.88620 0.87848 0.90841 0.83446 0.93572 0.95393 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.24 0.74 -0.99 16 2 C 0.06 2.47 7.21 43.07 0.31 2.78 16 3 C -0.31 -13.31 9.58 22.15 0.21 -13.09 16 4 C 0.30 13.93 7.66 131.35 1.01 14.93 16 5 N -0.64 -25.32 5.40 -312.25 -1.69 -27.01 16 6 C 0.61 22.69 7.75 86.40 0.67 23.36 16 7 O -0.55 -21.93 12.82 -4.46 -0.06 -21.99 16 8 C -0.35 -11.18 6.17 -19.90 -0.12 -11.30 16 9 C 0.13 3.66 11.44 85.42 0.98 4.64 16 10 N -0.34 -9.41 12.57 -56.61 -0.71 -10.12 16 11 N -0.27 -6.48 3.86 -187.27 -0.72 -7.20 16 12 C 0.10 1.35 11.17 83.30 0.93 2.28 16 13 C -0.14 -1.12 9.67 22.03 0.21 -0.90 16 14 C -0.01 -0.18 5.89 -19.81 -0.12 -0.30 16 15 C -0.12 -0.71 10.03 71.24 0.71 0.01 16 16 C -0.15 -3.30 9.38 22.30 0.21 -3.09 16 17 C 0.17 4.54 6.76 39.50 0.27 4.81 16 18 N -0.37 -18.60 3.60 -348.74 -1.26 -19.86 16 19 C 0.27 14.63 6.01 85.63 0.51 15.14 16 20 C -0.56 -31.49 9.39 25.60 0.24 -31.25 16 21 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 22 C 0.03 1.57 5.46 84.65 0.46 2.04 16 23 N -0.91 -51.10 13.29 21.45 0.28 -50.82 16 24 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 N -0.33 -16.38 12.56 -47.45 -0.60 -16.97 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.17 7.01 5.82 -2.91 -0.02 6.99 16 33 H 0.42 15.45 6.88 -92.71 -0.64 14.81 16 34 H 0.21 5.21 7.46 -2.91 -0.02 5.19 16 35 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.21 -0.38 8.06 -2.91 -0.02 -0.41 16 37 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.10 0.09 8.10 -2.39 -0.02 0.07 16 39 H 0.07 0.56 8.09 -2.39 -0.02 0.55 16 40 H 0.15 3.63 7.12 -2.91 -0.02 3.61 16 41 H 0.05 2.40 7.50 -2.39 -0.02 2.38 16 42 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -78.71 372.88 4.94 -73.76 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.43 Total: 25.76 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 7.23 Total: 9.07 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -4.69 Total: -131.98 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.06 Total: -21.99 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -78.71 4.94 -73.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535040002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.744 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds