Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39718 * 125.78176 * 2 1 4 4 C 1.36156 * 107.86400 * 180.02562 * 3 2 1 5 5 N 1.39348 * 126.26993 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99870 * 359.96316 * 5 4 3 7 7 O 1.21608 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.47599 * 119.99973 * 179.97438 * 6 5 4 9 9 C 1.41788 * 120.37657 * 0.02562 * 8 6 5 10 10 C 1.34536 * 120.15006 * 180.02562 * 9 8 6 11 11 N 1.36731 * 120.95473 * 359.95239 * 10 9 8 12 12 C 1.36446 * 132.26319 * 180.02562 * 11 10 9 13 13 C 1.50698 * 126.39187 * 359.97319 * 12 11 10 14 14 C 1.35444 * 107.21872 * 179.97438 * 12 11 10 15 15 N 1.33184 * 108.62486 * 359.97438 * 14 12 11 16 16 C 1.32657 * 109.12431 * 0.02562 * 15 14 12 17 17 C 1.38466 * 120.37645 * 179.72230 * 8 6 5 18 18 N 1.35814 * 107.46706 * 0.02562 * 4 3 2 19 19 C 1.46494 * 126.09585 * 180.02562 * 18 4 3 20 20 C 1.50695 * 109.47345 * 269.99807 * 19 18 4 21 21 H 1.08003 * 120.00060 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00432 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00291 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99808 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47034 * 89.99729 * 24 22 20 26 26 H 1.48497 * 109.46907 * 209.99576 * 24 22 20 27 27 H 1.48502 * 109.46864 * 329.99752 * 24 22 20 28 28 N 1.30835 * 125.77342 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47364 * 269.98645 * 1 2 3 30 30 H 1.09004 * 109.46810 * 29.97621 * 1 2 3 31 31 H 1.09001 * 109.47607 * 149.98401 * 1 2 3 32 32 H 1.08005 * 126.07202 * 0.02562 * 3 2 1 33 33 H 0.97005 * 120.00400 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.92976 * 359.97438 * 9 8 6 35 35 H 1.08003 * 119.52483 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47262 * 90.00345 * 13 12 11 37 37 H 1.09003 * 109.47197 * 210.00644 * 13 12 11 38 38 H 1.09004 * 109.46856 * 330.00554 * 13 12 11 39 39 H 1.08008 * 125.68907 * 180.02562 * 14 12 11 40 40 H 1.08006 * 120.45396 * 359.97438 * 17 8 6 41 41 H 1.09004 * 109.47525 * 29.99893 * 19 18 4 42 42 H 1.09003 * 109.47482 * 149.99481 * 19 18 4 43 43 H 0.97002 * 119.99787 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7146 -0.0006 5 7 4.7495 1.5299 -0.0003 6 6 4.6129 2.8708 -0.0001 7 8 3.5036 3.3691 -0.0006 8 6 5.8099 3.7345 0.0008 9 6 7.1071 3.1621 0.0009 10 6 8.1949 3.9536 0.0023 11 7 8.0737 5.3155 0.0026 12 6 8.9982 6.3191 0.0034 13 6 10.4962 6.1548 0.0047 14 6 8.3183 7.4905 0.0027 15 7 7.0133 7.2249 0.0010 16 6 6.8374 5.9100 0.0011 17 6 5.6787 5.1129 -0.0048 18 7 3.6088 -0.6435 -0.0015 19 6 4.7856 -1.5159 -0.0018 20 6 5.1895 -1.8141 -1.4227 21 1 4.6261 -1.3953 -2.2435 22 6 6.2789 -2.6207 -1.6750 23 7 6.6311 -2.8814 -2.9151 24 14 7.2539 -3.3445 -0.2554 25 1 6.6788 -4.6613 0.1194 26 1 8.6697 -3.5217 -0.6668 27 1 7.1880 -2.4258 0.9095 28 7 2.2718 -1.0615 -0.0005 29 1 -0.3634 -0.0002 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.9875 2.1598 0.0004 33 1 5.6344 1.1325 -0.0004 34 1 7.2222 2.0882 0.0008 35 1 9.1782 3.5068 0.0028 36 1 10.8583 6.1152 -1.0226 37 1 10.9540 6.9998 0.5190 38 1 10.7598 5.2304 0.5188 39 1 8.7608 8.4758 0.0027 40 1 4.7000 5.5696 -0.0102 41 1 5.6075 -1.0176 0.5125 42 1 4.5475 -2.4476 0.5114 43 1 7.3973 -3.4492 -3.0925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580090237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = 139.201375 kcal Electronic energy + Delta-G solvation = -28179.216006 eV Core-core repulsion = 24227.944116 eV Total energy + Delta-G solvation = -3951.271890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.16913 -41.01642 -39.51772 -37.27672 -34.97687 -34.24019 -33.84987 -32.24699 -31.75515 -30.34869 -29.58601 -28.60018 -27.04081 -26.35458 -24.48067 -23.56171 -22.56176 -21.54008 -21.35966 -19.93366 -19.56251 -17.73475 -17.51980 -17.25735 -17.06628 -16.39719 -16.16167 -15.56301 -15.31930 -14.96469 -14.61897 -14.38646 -13.93202 -13.92273 -13.88165 -13.49671 -13.45521 -13.18991 -12.88109 -12.82816 -12.64488 -12.38278 -12.14577 -12.09185 -11.94671 -11.85199 -11.25139 -11.08719 -10.90896 -10.59196 -10.41941 -10.31799 -10.15730 -9.82484 -9.68333 -9.16686 -8.92556 -8.11067 -7.99311 -7.55715 -6.39555 -4.44433 0.17245 0.73606 2.15591 2.20186 2.51583 2.57726 2.92854 3.01757 3.07907 3.12391 3.33834 3.53494 3.59542 3.91755 4.07299 4.12485 4.23845 4.35604 4.61197 4.65314 4.86298 4.92139 5.03424 5.10958 5.17238 5.24296 5.35142 5.49377 5.54736 5.69793 5.71267 5.97099 5.98879 6.03175 6.09094 6.17336 6.23867 6.27060 6.28903 6.57312 6.67028 6.68584 7.13298 7.35619 7.43588 7.51178 7.66313 8.04727 8.20371 8.49653 8.67285 9.14637 10.72535 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003487 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.910045 B = 8028.128205 C =10520.612969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.287 4.287 4 C 0.302 3.698 5 N -0.632 5.632 6 C 0.572 3.428 7 O -0.504 6.504 8 C -0.118 4.118 9 C -0.115 4.115 10 C 0.053 3.947 11 N -0.351 5.351 12 C -0.060 4.060 13 C -0.074 4.074 14 C 0.033 3.967 15 N -0.474 5.474 16 C 0.205 3.795 17 C 0.007 3.993 18 N -0.345 5.345 19 C 0.230 3.770 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.872 3.128 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.266 1.266 28 N -0.279 5.279 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.165 0.835 33 H 0.414 0.586 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 15.932 8.003 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.318 4.318 4 C 0.081 3.919 5 N -0.278 5.278 6 C 0.359 3.641 7 O -0.378 6.378 8 C -0.128 4.128 9 C -0.136 4.136 10 C -0.068 4.068 11 N -0.024 5.024 12 C -0.174 4.174 13 C -0.132 4.132 14 C -0.120 4.120 15 N -0.193 5.193 16 C -0.036 4.036 17 C -0.014 4.014 18 N -0.131 5.131 19 C 0.111 3.889 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.518 5.518 24 Si 0.698 3.302 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.190 1.190 28 N -0.104 5.104 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.252 0.748 34 H 0.175 0.825 35 H 0.187 0.813 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.200 0.800 40 H 0.186 0.814 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.574 15.409 7.877 18.181 hybrid contribution 2.043 -0.653 0.432 2.188 sum 7.618 14.757 8.308 18.569 Atomic orbital electron populations 1.20047 0.87326 1.02697 1.02150 1.22049 0.96652 0.90877 1.01429 1.21307 0.88923 1.00638 1.20955 1.17931 0.87858 0.83009 1.03105 1.42506 1.08369 1.05334 1.71626 1.17670 0.88607 0.80860 0.76978 1.90752 1.25633 1.73760 1.47682 1.19668 0.92952 0.93232 1.06920 1.20900 0.90301 1.01042 1.01368 1.21411 1.01418 0.80093 1.03914 1.42746 1.08787 1.05904 1.44962 1.21391 0.93124 0.87070 1.15845 1.20225 0.86423 1.03496 1.03066 1.22392 0.88743 0.97793 1.03107 1.70679 1.18210 1.09687 1.20760 1.20653 0.85206 0.89299 1.08398 1.20673 0.97039 0.90611 0.93057 1.49050 1.06163 1.01816 1.56036 1.19938 0.79287 0.90001 0.99690 1.21209 1.14297 1.32689 0.90340 0.89975 1.24826 0.96621 0.95202 0.95763 1.69875 1.26872 1.36430 1.18620 0.86927 0.80010 0.80826 0.82434 1.19400 1.20472 1.19030 1.77358 0.85768 1.21753 1.25508 0.91259 0.90933 0.91349 0.81792 0.74839 0.82509 0.81293 0.90623 0.89553 0.91509 0.79975 0.81384 0.94424 0.93084 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.53 16 2 C 0.06 1.07 7.20 -82.46 -0.59 0.48 16 3 C -0.29 -5.67 9.58 -39.78 -0.38 -6.05 16 4 C 0.30 6.11 7.68 -152.77 -1.17 4.94 16 5 N -0.63 -10.49 5.37 -12.27 -0.07 -10.55 16 6 C 0.57 8.86 7.73 -12.44 -0.10 8.76 16 7 O -0.50 -8.92 13.49 5.27 0.07 -8.85 16 8 C -0.12 -1.49 5.90 -104.64 -0.62 -2.10 16 9 C -0.12 -1.17 9.48 -39.53 -0.37 -1.55 16 10 C 0.05 0.48 10.80 -16.68 -0.18 0.30 16 11 N -0.35 -3.82 2.94 -58.55 -0.17 -3.99 16 12 C -0.06 -0.55 7.02 -81.54 -0.57 -1.12 16 13 C -0.07 -0.39 10.30 36.00 0.37 -0.02 16 14 C 0.03 0.34 11.75 -17.96 -0.21 0.13 16 15 N -0.47 -6.28 11.31 -12.80 -0.14 -6.43 16 16 C 0.21 2.64 7.79 -155.97 -1.22 1.43 16 17 C 0.01 0.09 9.70 -38.59 -0.37 -0.28 16 18 N -0.35 -7.70 3.62 -61.46 -0.22 -7.92 16 19 C 0.23 5.21 5.09 -5.20 -0.03 5.18 16 20 C -0.55 -14.51 9.94 -34.44 -0.34 -14.85 16 21 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 22 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 23 N -0.88 -24.97 13.96 55.43 0.77 -24.20 16 24 Si 0.87 18.80 27.47 -169.99 -4.67 14.13 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.23 6.54 56.52 0.37 -4.86 16 28 N -0.28 -6.26 12.56 33.64 0.42 -5.83 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.16 3.13 5.82 -52.48 -0.31 2.83 16 33 H 0.41 6.05 6.06 -40.82 -0.25 5.81 16 34 H 0.16 1.33 6.46 -52.49 -0.34 0.99 16 35 H 0.17 0.98 8.04 -52.48 -0.42 0.56 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 39 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.17 2.05 7.67 -52.48 -0.40 1.65 16 41 H 0.04 0.76 6.58 -51.93 -0.34 0.42 16 42 H 0.05 1.16 7.57 -51.93 -0.39 0.77 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -34.48 368.81 -8.96 -43.44 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.00 Total: 7.93 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -5.51 Total: -3.27 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.59 Total: -58.93 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.07 Total: -8.85 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.67 Total: 14.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.48 -8.96 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.638 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds