Wall clock time and date at job start Sat Apr 11 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39718 * 125.78176 * 2 1 4 4 C 1.36156 * 107.86400 * 180.02562 * 3 2 1 5 5 N 1.39348 * 126.26993 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99870 * 359.96316 * 5 4 3 7 7 O 1.21608 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.47599 * 119.99973 * 179.97438 * 6 5 4 9 9 C 1.41788 * 120.37657 * 0.02562 * 8 6 5 10 10 C 1.34536 * 120.15006 * 180.02562 * 9 8 6 11 11 N 1.36731 * 120.95473 * 359.95239 * 10 9 8 12 12 C 1.36446 * 132.26319 * 180.02562 * 11 10 9 13 13 C 1.50698 * 126.39187 * 359.97319 * 12 11 10 14 14 C 1.35444 * 107.21872 * 179.97438 * 12 11 10 15 15 N 1.33184 * 108.62486 * 359.97438 * 14 12 11 16 16 C 1.32657 * 109.12431 * 0.02562 * 15 14 12 17 17 C 1.38466 * 120.37645 * 179.72230 * 8 6 5 18 18 N 1.35814 * 107.46706 * 0.02562 * 4 3 2 19 19 C 1.46494 * 126.09585 * 180.02562 * 18 4 3 20 20 C 1.50695 * 109.47345 * 269.99807 * 19 18 4 21 21 H 1.08003 * 120.00060 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00432 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00291 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99808 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47034 * 89.99729 * 24 22 20 26 26 H 1.48497 * 109.46907 * 209.99576 * 24 22 20 27 27 H 1.48502 * 109.46864 * 329.99752 * 24 22 20 28 28 N 1.30835 * 125.77342 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47364 * 269.98645 * 1 2 3 30 30 H 1.09004 * 109.46810 * 29.97621 * 1 2 3 31 31 H 1.09001 * 109.47607 * 149.98401 * 1 2 3 32 32 H 1.08005 * 126.07202 * 0.02562 * 3 2 1 33 33 H 0.97005 * 120.00400 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.92976 * 359.97438 * 9 8 6 35 35 H 1.08003 * 119.52483 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47262 * 90.00345 * 13 12 11 37 37 H 1.09003 * 109.47197 * 210.00644 * 13 12 11 38 38 H 1.09004 * 109.46856 * 330.00554 * 13 12 11 39 39 H 1.08008 * 125.68907 * 180.02562 * 14 12 11 40 40 H 1.08006 * 120.45396 * 359.97438 * 17 8 6 41 41 H 1.09004 * 109.47525 * 29.99893 * 19 18 4 42 42 H 1.09003 * 109.47482 * 149.99481 * 19 18 4 43 43 H 0.97002 * 119.99787 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7146 -0.0006 5 7 4.7495 1.5299 -0.0003 6 6 4.6129 2.8708 -0.0001 7 8 3.5036 3.3691 -0.0006 8 6 5.8099 3.7345 0.0008 9 6 7.1071 3.1621 0.0009 10 6 8.1949 3.9536 0.0023 11 7 8.0737 5.3155 0.0026 12 6 8.9982 6.3191 0.0034 13 6 10.4962 6.1548 0.0047 14 6 8.3183 7.4905 0.0027 15 7 7.0133 7.2249 0.0010 16 6 6.8374 5.9100 0.0011 17 6 5.6787 5.1129 -0.0048 18 7 3.6088 -0.6435 -0.0015 19 6 4.7856 -1.5159 -0.0018 20 6 5.1895 -1.8141 -1.4227 21 1 4.6261 -1.3953 -2.2435 22 6 6.2789 -2.6207 -1.6750 23 7 6.6311 -2.8814 -2.9151 24 14 7.2539 -3.3445 -0.2554 25 1 6.6788 -4.6613 0.1194 26 1 8.6697 -3.5217 -0.6668 27 1 7.1880 -2.4258 0.9095 28 7 2.2718 -1.0615 -0.0005 29 1 -0.3634 -0.0002 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.9875 2.1598 0.0004 33 1 5.6344 1.1325 -0.0004 34 1 7.2222 2.0882 0.0008 35 1 9.1782 3.5068 0.0028 36 1 10.8583 6.1152 -1.0226 37 1 10.9540 6.9998 0.5190 38 1 10.7598 5.2304 0.5188 39 1 8.7608 8.4758 0.0027 40 1 4.7000 5.5696 -0.0102 41 1 5.6075 -1.0176 0.5125 42 1 4.5475 -2.4476 0.5114 43 1 7.3973 -3.4492 -3.0925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580090237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:06 Heat of formation + Delta-G solvation = 117.841563 kcal Electronic energy + Delta-G solvation = -28180.142237 eV Core-core repulsion = 24227.944116 eV Total energy + Delta-G solvation = -3952.198121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.97484 -42.49332 -40.83822 -38.17633 -36.41432 -35.62662 -35.07513 -34.00280 -32.51703 -31.20048 -31.07387 -30.03019 -28.03885 -27.84442 -25.47197 -24.42714 -24.29599 -22.71143 -22.19606 -21.39261 -20.91844 -19.25675 -18.83717 -18.60650 -18.19346 -17.28655 -17.22751 -16.87201 -16.72480 -16.22746 -15.80203 -15.75296 -15.46435 -14.93097 -14.74348 -14.62699 -14.47825 -14.24886 -14.09493 -13.90693 -13.77041 -13.52620 -13.34155 -13.16367 -12.98066 -12.90980 -12.88563 -12.58011 -12.17969 -11.97748 -11.85393 -11.79869 -11.59082 -11.24861 -11.14111 -10.92118 -9.96783 -9.63816 -9.16856 -8.82414 -8.41285 -6.54589 -0.76894 -0.06320 0.81058 1.15867 1.34643 1.39078 1.46037 1.47519 1.53664 1.81711 1.99301 2.07233 2.25399 2.47129 2.90274 3.00286 3.29331 3.40708 3.60138 3.75379 3.85450 4.01547 4.10066 4.25460 4.33093 4.44212 4.46658 4.55662 4.64677 4.67257 4.78119 4.79210 4.81594 4.89642 4.94990 4.98696 5.10434 5.12282 5.18651 5.21622 5.32443 5.54442 5.85528 5.92031 5.94455 6.10590 6.28805 6.49920 6.70368 6.77939 6.93512 7.10357 8.75039 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003487 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.910045 B = 8028.128205 C =10520.612969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.061 3.939 3 C -0.302 4.302 4 C 0.300 3.700 5 N -0.628 5.628 6 C 0.574 3.426 7 O -0.530 6.530 8 C -0.123 4.123 9 C -0.126 4.126 10 C 0.065 3.935 11 N -0.357 5.357 12 C -0.046 4.046 13 C -0.073 4.073 14 C 0.017 3.983 15 N -0.506 5.506 16 C 0.175 3.825 17 C 0.001 3.999 18 N -0.366 5.366 19 C 0.237 3.763 20 C -0.555 4.555 21 H 0.022 0.978 22 C 0.026 3.974 23 N -0.934 5.934 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.228 1.228 28 N -0.323 5.323 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.423 0.577 34 H 0.175 0.825 35 H 0.211 0.789 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.212 0.788 40 H 0.160 0.840 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 16.501 10.035 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C -0.334 4.334 4 C 0.079 3.921 5 N -0.276 5.276 6 C 0.363 3.637 7 O -0.406 6.406 8 C -0.132 4.132 9 C -0.146 4.146 10 C -0.055 4.055 11 N -0.030 5.030 12 C -0.161 4.161 13 C -0.131 4.131 14 C -0.136 4.136 15 N -0.226 5.226 16 C -0.065 4.065 17 C -0.021 4.021 18 N -0.152 5.152 19 C 0.117 3.883 20 C -0.594 4.594 21 H 0.040 0.960 22 C -0.174 4.174 23 N -0.572 5.572 24 Si 0.770 3.230 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.150 1.150 28 N -0.148 5.148 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.262 0.738 34 H 0.192 0.808 35 H 0.228 0.772 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.229 0.771 40 H 0.177 0.823 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.351 16.006 9.917 20.598 hybrid contribution 1.168 -0.646 -0.309 1.370 sum 9.519 15.360 9.608 20.466 Atomic orbital electron populations 1.20245 0.83884 1.03870 1.04058 1.22862 0.98795 0.89968 0.98850 1.21522 0.89165 1.00988 1.21699 1.18270 0.89233 0.82737 1.01910 1.42574 1.07892 1.05416 1.71691 1.18149 0.89293 0.80508 0.75709 1.90721 1.27057 1.74058 1.48802 1.19422 0.92791 0.92569 1.08453 1.21058 0.89398 1.02073 1.02120 1.22006 1.02759 0.79256 1.01521 1.42992 1.08431 1.06830 1.44727 1.22146 0.94726 0.86269 1.12944 1.20430 0.83254 1.05159 1.04249 1.23035 0.87856 0.99689 1.02996 1.70623 1.20271 1.10267 1.21477 1.20606 0.86022 0.89551 1.10289 1.20608 0.97108 0.90822 0.93518 1.48990 1.06127 1.02431 1.57642 1.19802 0.80509 0.90775 0.97175 1.21225 1.14162 1.33018 0.90950 0.96000 1.25823 0.97544 0.95066 0.98984 1.70040 1.27889 1.37547 1.21681 0.85712 0.77925 0.80050 0.79298 1.19690 1.19644 1.15023 1.77298 0.86247 1.23385 1.27829 0.88853 0.88962 0.90924 0.81351 0.73774 0.80824 0.77245 0.89515 0.87471 0.90182 0.77141 0.82274 0.91108 0.93015 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.44 71.24 0.74 -0.97 16 2 C 0.06 2.38 7.20 43.06 0.31 2.69 16 3 C -0.30 -12.13 9.58 22.14 0.21 -11.92 16 4 C 0.30 12.31 7.68 131.20 1.01 13.32 16 5 N -0.63 -20.91 5.37 -310.99 -1.67 -22.58 16 6 C 0.57 18.11 7.73 86.71 0.67 18.78 16 7 O -0.53 -19.39 13.49 -4.06 -0.05 -19.45 16 8 C -0.12 -3.10 5.90 -19.87 -0.12 -3.21 16 9 C -0.13 -2.34 9.48 22.30 0.21 -2.13 16 10 C 0.06 0.99 10.80 83.08 0.90 1.89 16 11 N -0.36 -7.02 2.94 -339.14 -1.00 -8.02 16 12 C -0.05 -0.72 7.02 41.19 0.29 -0.43 16 13 C -0.07 -0.46 10.30 71.24 0.73 0.27 16 14 C 0.02 0.32 11.75 83.84 0.99 1.30 16 15 N -0.51 -13.29 11.31 -194.41 -2.20 -15.49 16 16 C 0.18 4.48 7.79 133.97 1.04 5.52 16 17 C 0.00 0.02 9.70 22.91 0.22 0.24 16 18 N -0.37 -16.57 3.62 -348.35 -1.26 -17.83 16 19 C 0.24 10.64 5.09 85.63 0.44 11.07 16 20 C -0.56 -30.27 9.94 25.60 0.25 -30.02 16 21 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 22 C 0.03 1.39 5.47 84.66 0.46 1.85 16 23 N -0.93 -54.19 13.96 21.45 0.30 -53.89 16 24 Si 0.95 37.56 27.47 68.60 1.88 39.45 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 27 H -0.23 -7.57 6.54 99.48 0.65 -6.92 16 28 N -0.32 -14.75 12.56 -47.48 -0.60 -15.34 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.17 6.56 5.82 -2.91 -0.02 6.54 16 33 H 0.42 12.06 6.06 -92.70 -0.56 11.50 16 34 H 0.17 2.54 6.46 -2.91 -0.02 2.53 16 35 H 0.21 1.40 8.04 -2.91 -0.02 1.38 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.08 0.35 8.13 -2.39 -0.02 0.33 16 39 H 0.21 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.16 4.22 7.67 -2.91 -0.02 4.20 16 41 H 0.07 2.68 6.58 -2.38 -0.02 2.67 16 42 H 0.05 2.31 7.57 -2.39 -0.02 2.29 16 43 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -80.06 368.81 4.22 -75.84 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.45 Total: 29.06 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 8.36 Total: 8.25 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.42 Total: -133.15 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.88 Total: 39.45 kcal Total: -80.06 4.22 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.682 kcal (2) G-P(sol) polarization free energy of solvation -80.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds