Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39753 * 125.83645 * 2 1 4 4 C 1.36112 * 107.82933 * 179.97438 * 3 2 1 5 5 N 1.39473 * 126.21648 * 180.26406 * 4 3 2 6 6 C 1.34768 * 120.00307 * 359.68705 * 5 4 3 7 7 O 1.21296 * 119.99812 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00465 * 180.02562 * 6 5 4 9 9 C 1.50694 * 109.47613 * 179.97438 * 8 6 5 10 10 C 1.38551 * 126.21885 * 265.02158 * 9 8 6 11 11 N 1.31482 * 109.01133 * 179.97438 * 10 9 8 12 12 N 1.40048 * 108.91334 * 0.02562 * 11 10 9 13 13 C 1.36532 * 132.43109 * 180.02562 * 12 11 10 14 14 C 1.34937 * 120.65504 * 179.27789 * 13 12 11 15 15 C 1.40472 * 120.43365 * 0.60154 * 14 13 12 16 16 C 1.36062 * 119.58786 * 359.62340 * 15 14 13 17 17 C 1.37128 * 107.44513 * 359.76864 * 12 11 10 18 18 N 1.35265 * 107.56308 * 359.97438 * 4 3 2 19 19 C 1.46504 * 126.04293 * 179.97438 * 18 4 3 20 20 C 1.50694 * 109.47097 * 90.00597 * 19 18 4 21 21 H 1.08004 * 120.00271 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99797 * 180.02562 * 20 19 18 23 23 N 1.31504 * 120.00156 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99685 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47403 * 59.99753 * 24 22 20 26 26 H 1.48504 * 109.46963 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47045 * 299.99021 * 24 22 20 28 28 N 1.30842 * 125.83726 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47443 * 269.97747 * 1 2 3 30 30 H 1.08995 * 109.47085 * 29.98161 * 1 2 3 31 31 H 1.09003 * 109.46782 * 149.97934 * 1 2 3 32 32 H 1.08006 * 126.08674 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99321 * 179.68679 * 5 4 3 34 34 H 1.08998 * 109.47095 * 299.99696 * 8 6 5 35 35 H 1.09005 * 109.47403 * 59.99387 * 8 6 5 36 36 H 1.08001 * 125.49118 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.67070 * 359.95633 * 13 12 11 38 38 H 1.08003 * 119.77843 * 180.22756 * 14 13 12 39 39 H 1.07994 * 120.20132 * 179.64947 * 15 14 13 40 40 H 1.08000 * 120.38491 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.46740 * 210.00208 * 19 18 4 42 42 H 1.09005 * 109.46827 * 329.99960 * 19 18 4 43 43 H 0.97008 * 120.00331 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 0.0006 5 7 4.7512 1.5276 0.0060 6 6 4.6157 2.8684 0.0049 7 8 3.5095 3.3661 -0.0013 8 6 5.8382 3.7494 0.0101 9 6 5.4152 5.1958 0.0070 10 6 5.2839 6.0080 -1.1078 11 7 4.8966 7.2041 -0.7230 12 7 4.7618 7.2111 0.6709 13 6 4.3921 8.1829 1.5558 14 6 4.3278 7.9211 2.8780 15 6 4.6530 6.6452 3.3674 16 6 5.0274 5.6676 2.4982 17 6 5.0814 5.9559 1.1211 18 7 3.6092 -0.6404 0.0015 19 6 4.7871 -1.5116 0.0018 20 6 5.1911 -1.8094 1.4227 21 1 4.6273 -1.3913 2.2435 22 6 6.2814 -2.6149 1.6749 23 7 6.9682 -3.1237 0.6756 24 14 6.7827 -2.9835 3.4363 25 1 5.6642 -3.6637 4.1373 26 1 7.9766 -3.8667 3.4366 27 1 7.1057 -1.7136 4.1351 28 7 2.2731 -1.0607 0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9901 2.1597 0.0004 33 1 5.6358 1.1295 0.0105 34 1 6.4293 3.5454 0.9029 35 1 6.4375 3.5446 -0.8771 36 1 5.4697 5.7070 -2.1282 37 1 4.1382 9.1679 1.1929 38 1 4.0301 8.6994 3.5651 39 1 4.6057 6.4414 4.4269 40 1 5.2806 4.6822 2.8605 41 1 4.5498 -2.4435 -0.5113 42 1 5.6083 -1.0124 -0.5126 43 1 7.7351 -3.6907 0.8530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592587541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = 126.350883 kcal Electronic energy + Delta-G solvation = -28251.973542 eV Core-core repulsion = 24300.144413 eV Total energy + Delta-G solvation = -3951.829129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.98688 -42.33871 -40.42140 -38.12348 -36.20413 -35.53123 -34.54869 -33.80619 -32.02148 -31.55359 -30.71232 -29.75363 -27.81541 -27.51236 -24.76766 -24.67171 -23.69628 -23.08894 -21.60623 -21.14057 -20.54854 -18.86290 -18.38028 -18.11612 -17.70669 -17.60096 -16.82728 -16.69135 -16.51572 -16.43260 -15.97157 -15.71072 -15.45753 -15.13242 -14.56041 -14.48233 -14.36138 -14.08643 -14.02468 -13.63383 -13.37065 -13.32883 -13.12503 -12.89456 -12.74413 -12.69926 -12.68007 -12.54982 -12.26568 -11.88189 -11.66251 -11.65375 -11.49445 -11.31683 -10.80542 -10.74111 -10.27303 -9.60780 -9.02219 -8.47000 -8.34234 -6.51859 -0.12590 0.17873 0.86704 1.32001 1.38466 1.40505 1.42023 1.50007 1.69931 1.76637 2.11100 2.28110 2.39054 2.53487 2.96274 3.30928 3.71809 3.75555 3.85434 3.92031 3.96577 4.16146 4.21308 4.29308 4.39162 4.59206 4.65276 4.68048 4.75202 4.75879 4.86067 4.88103 4.96113 4.97117 4.97882 5.14275 5.22793 5.26256 5.33127 5.51614 5.52862 5.60038 5.79215 5.96407 5.97928 6.21318 6.37349 6.58526 6.60084 7.03697 7.12319 7.20549 8.72034 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.003131 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.824266 B = 8939.864688 C =10123.342811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.311 4.311 4 C 0.305 3.695 5 N -0.640 5.640 6 C 0.518 3.482 7 O -0.539 6.539 8 C -0.037 4.037 9 C -0.257 4.257 10 C 0.087 3.913 11 N -0.358 5.358 12 N -0.284 5.284 13 C 0.085 3.915 14 C -0.150 4.150 15 C -0.074 4.074 16 C -0.137 4.137 17 C 0.105 3.895 18 N -0.367 5.367 19 C 0.273 3.727 20 C -0.556 4.556 21 H 0.047 0.953 22 C 0.028 3.972 23 N -0.914 5.914 24 Si 0.968 3.032 25 H -0.280 1.280 26 H -0.273 1.273 27 H -0.262 1.262 28 N -0.334 5.334 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.423 0.577 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.211 0.789 37 H 0.189 0.811 38 H 0.195 0.805 39 H 0.171 0.829 40 H 0.148 0.852 41 H 0.025 0.975 42 H 0.050 0.950 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 22.097 3.768 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.343 4.343 4 C 0.082 3.918 5 N -0.289 5.289 6 C 0.307 3.693 7 O -0.413 6.413 8 C -0.078 4.078 9 C -0.269 4.269 10 C -0.089 4.089 11 N -0.182 5.182 12 N -0.050 5.050 13 C -0.040 4.040 14 C -0.172 4.172 15 C -0.097 4.097 16 C -0.157 4.157 17 C -0.014 4.014 18 N -0.153 5.153 19 C 0.154 3.846 20 C -0.594 4.594 21 H 0.066 0.934 22 C -0.173 4.173 23 N -0.552 5.552 24 Si 0.792 3.208 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.187 1.187 28 N -0.159 5.159 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.180 0.820 33 H 0.260 0.740 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.228 0.772 37 H 0.206 0.794 38 H 0.212 0.788 39 H 0.188 0.812 40 H 0.166 0.834 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.545 22.247 3.137 22.520 hybrid contribution 0.986 -0.973 0.707 1.555 sum -0.559 21.273 3.844 21.625 Atomic orbital electron populations 1.20205 0.84151 1.03903 1.03623 1.22845 0.98639 0.90158 0.99146 1.21411 0.89316 1.00502 1.23083 1.18349 0.89756 0.82774 1.00949 1.43112 1.07365 1.06027 1.72389 1.21696 0.92890 0.80313 0.74386 1.90610 1.28655 1.73932 1.48135 1.19829 0.93088 0.87005 1.07852 1.19328 1.20005 0.96590 0.90952 1.24044 0.94266 0.89712 1.00881 1.77757 1.31586 1.22955 0.85879 1.46377 1.43036 1.09110 1.06509 1.22174 0.98881 0.94053 0.88847 1.21383 1.02999 0.99371 0.93408 1.21650 0.94040 0.92069 1.01915 1.20887 1.03626 1.02194 0.88998 1.19688 0.99792 0.86364 0.95590 1.49163 1.06222 1.02939 1.56950 1.19223 0.78624 0.88932 0.97820 1.21375 1.13681 1.32774 0.91609 0.93432 1.25676 0.95355 0.94268 1.02043 1.69982 1.19454 1.32754 1.32987 0.85452 0.77662 0.78783 0.78878 1.20519 1.19773 1.18660 1.77287 0.86571 1.23579 1.28457 0.89729 0.88906 0.90624 0.82039 0.73969 0.85862 0.84413 0.77209 0.79420 0.78840 0.81150 0.83405 0.95724 0.93182 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 10.44 71.24 0.74 -1.03 16 2 C 0.06 2.36 7.21 43.07 0.31 2.67 16 3 C -0.31 -13.12 9.58 22.14 0.21 -12.90 16 4 C 0.30 13.10 7.66 131.32 1.01 14.11 16 5 N -0.64 -21.97 5.41 -308.57 -1.67 -23.64 16 6 C 0.52 15.86 7.79 87.66 0.68 16.54 16 7 O -0.54 -20.19 13.16 -3.08 -0.04 -20.23 16 8 C -0.04 -0.78 6.19 29.10 0.18 -0.60 16 9 C -0.26 -6.36 4.68 -19.62 -0.09 -6.45 16 10 C 0.09 2.12 11.87 84.82 1.01 3.13 16 11 N -0.36 -9.81 12.66 -57.54 -0.73 -10.54 16 12 N -0.28 -6.99 3.90 -187.79 -0.73 -7.73 16 13 C 0.08 1.38 11.19 83.20 0.93 2.32 16 14 C -0.15 -1.67 9.98 22.06 0.22 -1.45 16 15 C -0.07 -1.01 10.07 22.31 0.22 -0.78 16 16 C -0.14 -2.76 10.09 22.39 0.23 -2.54 16 17 C 0.11 2.63 6.76 39.11 0.26 2.90 16 18 N -0.37 -17.79 3.60 -348.71 -1.26 -19.04 16 19 C 0.27 14.03 6.00 85.63 0.51 14.55 16 20 C -0.56 -30.19 9.39 25.60 0.24 -29.95 16 21 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 22 C 0.03 1.49 5.46 84.66 0.46 1.95 16 23 N -0.91 -49.63 13.28 21.45 0.28 -49.34 16 24 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 28 N -0.33 -16.15 12.56 -47.45 -0.60 -16.74 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.16 6.73 5.83 -2.91 -0.02 6.71 16 33 H 0.42 13.08 7.97 -92.71 -0.74 12.34 16 34 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.14 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.21 3.75 8.06 -2.91 -0.02 3.72 16 37 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 39 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 2.46 7.51 -2.38 -0.02 2.44 16 43 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -78.54 376.37 4.74 -73.80 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.32 Total: 27.55 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 7.13 Total: 2.45 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -4.70 Total: -127.03 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.04 Total: -20.23 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -78.54 4.74 -73.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592587541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.153 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds